Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28443 * 125.19284 * 2 1 4 4 C 1.30878 * 110.94804 * 180.31111 * 3 2 1 5 5 C 1.50700 * 126.05656 * 179.67303 * 4 3 2 6 6 C 1.53003 * 117.49530 * 163.66540 * 5 4 3 7 7 C 1.52997 * 117.49719 * 95.04528 * 5 4 3 8 8 C 1.39646 * 107.88213 * 359.71466 * 4 3 2 9 9 C 1.36651 * 125.19334 * 179.81964 * 2 1 3 10 10 C 1.47015 * 126.89686 * 359.96986 * 9 2 1 11 11 O 1.21672 * 120.00104 * 353.04816 * 10 9 2 12 12 N 1.34776 * 119.99697 * 173.05039 * 10 9 2 13 13 C 1.36840 * 119.99775 * 177.94600 * 12 10 9 14 14 H 1.08002 * 119.99678 * 322.46491 * 13 12 10 15 15 C 1.39051 * 120.00136 * 142.47177 * 13 12 10 16 16 N 1.31364 * 120.00170 * 353.74167 * 15 13 12 17 17 Si 1.86803 * 119.99943 * 173.74531 * 15 13 12 18 18 H 1.48502 * 109.46992 * 269.99440 * 17 15 13 19 19 H 1.48494 * 109.47098 * 29.99928 * 17 15 13 20 20 H 1.48506 * 109.46771 * 149.99870 * 17 15 13 21 21 C 1.46497 * 120.00474 * 357.94252 * 12 10 9 22 22 C 1.52995 * 117.50494 * 159.38392 * 21 12 10 23 23 C 1.53002 * 60.00205 * 252.51276 * 22 21 12 24 24 H 1.09001 * 109.47381 * 267.21158 * 1 2 3 25 25 H 1.09000 * 109.47129 * 27.21469 * 1 2 3 26 26 H 1.09003 * 109.47311 * 147.21854 * 1 2 3 27 27 H 1.08999 * 115.55362 * 309.37398 * 5 4 3 28 28 H 1.08999 * 117.50294 * 0.02562 * 6 5 4 29 29 H 1.09008 * 117.49861 * 145.02096 * 6 5 4 30 30 H 1.08997 * 117.50254 * 214.97940 * 7 5 4 31 31 H 1.09000 * 117.49700 * 359.97438 * 7 5 4 32 32 H 1.08000 * 127.32477 * 180.02562 * 8 4 3 33 33 H 0.96996 * 120.00547 * 175.18799 * 16 15 13 34 34 H 1.09009 * 115.54859 * 305.09434 * 21 12 10 35 35 H 1.09009 * 117.49617 * 0.02562 * 22 21 12 36 36 H 1.08995 * 117.50258 * 145.01755 * 22 21 12 37 37 H 1.09000 * 117.49589 * 252.51061 * 23 22 21 38 38 H 1.08991 * 117.50157 * 107.48792 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4738 0.7276 -0.0066 5 6 4.6333 1.6902 -0.0157 6 6 6.0109 1.1402 0.3593 7 6 5.2609 2.0529 1.3316 8 6 3.5624 -0.6660 -0.0048 9 6 2.2526 -1.1167 0.0035 10 6 1.8005 -2.5156 0.0085 11 8 0.6182 -2.7724 0.1375 12 7 2.6957 -3.5136 -0.1296 13 6 2.2804 -4.8166 -0.0828 14 1 1.4986 -5.1099 0.6021 15 6 2.8650 -5.7631 -0.9170 16 7 3.7269 -5.3872 -1.8344 17 14 2.4247 -7.5691 -0.7333 18 1 3.3541 -8.2095 0.2318 19 1 1.0315 -7.6907 -0.2341 20 1 2.5387 -8.2430 -2.0518 21 6 4.1134 -3.2035 -0.3300 22 6 5.1295 -4.2998 -0.0037 23 6 4.9935 -3.0846 0.9159 24 1 -0.3634 -0.0500 1.0264 25 1 -0.3633 0.9139 -0.4700 26 1 -0.3634 -0.8640 -0.5564 27 1 4.5921 2.4687 -0.7775 28 1 6.0787 0.0822 0.6121 29 1 6.8765 1.5568 -0.1560 30 1 5.6329 3.0698 1.4562 31 1 4.8349 1.5955 2.2246 32 1 4.4611 -1.2650 -0.0085 33 1 4.1871 -6.0527 -2.3693 34 1 4.3364 -2.5436 -1.1685 35 1 4.7431 -5.2521 0.3597 36 1 6.0210 -4.3616 -0.6277 37 1 5.7957 -2.3468 0.8969 38 1 4.5177 -3.2372 1.8846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616842.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = 104.816891 kcal Electronic energy + Delta-G solvation = -21881.376092 eV Core-core repulsion = 18727.907181 eV Total energy + Delta-G solvation = -3153.468911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.45201 -40.46082 -38.34118 -37.79823 -34.83614 -33.96844 -33.27408 -31.70004 -28.14272 -27.26070 -24.66863 -23.79497 -23.28100 -22.91705 -22.71789 -21.44214 -19.73235 -18.92839 -18.15030 -17.32229 -17.24096 -16.84763 -16.48060 -15.82553 -15.66548 -15.23677 -15.03455 -14.86680 -14.38748 -13.83502 -13.72213 -13.37184 -13.16464 -12.93724 -12.79883 -12.66478 -12.23497 -12.16533 -12.08224 -11.96142 -11.60167 -11.46449 -11.14226 -10.88908 -10.60982 -10.48032 -9.96867 -9.68864 -9.47666 -8.29708 -6.11194 0.43019 1.39929 1.42468 1.49979 1.58962 1.61946 2.25743 2.37262 2.86895 2.99416 3.03731 3.34405 3.50078 3.75937 4.02474 4.10007 4.21085 4.22834 4.27920 4.35085 4.41020 4.50533 4.52360 4.63026 4.72335 4.83801 4.93572 4.94676 5.14022 5.15218 5.32638 5.36430 5.40648 5.41242 5.57013 5.64092 5.86201 6.11832 6.44920 7.05610 7.17178 7.31599 7.91180 8.68924 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.006403 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.807542 B = 4371.869013 C = 5387.954316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.278 5.278 3 N -0.299 5.299 4 C 0.044 3.956 5 C -0.090 4.090 6 C -0.155 4.155 7 C -0.160 4.160 8 C -0.202 4.202 9 C -0.032 4.032 10 C 0.505 3.495 11 O -0.623 6.623 12 N -0.400 5.400 13 C -0.346 4.346 14 H 0.067 0.933 15 C 0.019 3.981 16 N -0.866 5.866 17 Si 0.980 3.020 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.274 1.274 21 C 0.080 3.920 22 C -0.112 4.112 23 C -0.195 4.195 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.189 0.811 33 H 0.276 0.724 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 9.850 2.902 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.065 5.065 3 N -0.132 5.132 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.192 4.192 7 C -0.198 4.198 8 C -0.230 4.230 9 C -0.160 4.160 10 C 0.295 3.705 11 O -0.511 6.511 12 N -0.116 5.116 13 C -0.474 4.474 14 H 0.085 0.915 15 C -0.187 4.187 16 N -0.501 5.501 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.205 1.205 20 H -0.199 1.199 21 C -0.024 4.024 22 C -0.150 4.150 23 C -0.234 4.234 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.104 0.896 27 H 0.144 0.856 28 H 0.113 0.887 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.205 0.795 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.981 10.510 2.745 12.400 hybrid contribution -0.407 -1.818 -0.105 1.866 sum 5.574 8.691 2.640 10.657 Atomic orbital electron populations 1.22255 0.72044 1.05438 1.04839 1.45672 1.08283 1.01517 1.51011 1.72916 1.04404 1.13602 1.22231 1.21572 0.91309 0.93129 1.05257 1.20123 0.89528 0.99705 1.01577 1.23137 0.93474 1.00278 1.02296 1.23029 1.02742 1.01755 0.92253 1.23141 0.96605 0.94907 1.08391 1.21676 0.92380 0.89574 1.12412 1.17408 0.85545 0.83742 0.83802 1.90557 1.17626 1.84885 1.58065 1.42794 1.04898 1.04270 1.59596 1.19395 1.23243 0.83611 1.21157 0.91526 1.26024 0.96084 1.03664 0.92944 1.70035 1.25303 1.35916 1.18814 0.85133 0.78756 0.77608 0.78151 1.18424 1.20466 1.19902 1.21456 0.79797 1.03685 0.97466 1.22724 0.98804 0.93287 1.00179 1.23690 1.02526 1.02670 0.94477 0.89578 0.86588 0.89632 0.85615 0.88682 0.85632 0.86108 0.90096 0.79464 0.91374 0.87865 0.90622 0.88113 0.85489 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.16 10.66 127.77 1.36 4.52 16 2 N -0.28 -11.17 3.75 -356.02 -1.34 -12.51 16 3 N -0.30 -11.22 11.90 -47.50 -0.57 -11.78 16 4 C 0.04 1.52 6.85 43.04 0.29 1.81 16 5 C -0.09 -2.21 6.33 -11.54 -0.07 -2.28 16 6 C -0.15 -2.93 10.02 30.60 0.31 -2.62 16 7 C -0.16 -3.17 10.23 30.59 0.31 -2.85 16 8 C -0.20 -7.64 8.21 22.68 0.19 -7.46 16 9 C -0.03 -1.45 6.87 40.76 0.28 -1.17 16 10 C 0.51 26.65 7.60 86.54 0.66 27.31 16 11 O -0.62 -36.00 14.75 -4.26 -0.06 -36.07 16 12 N -0.40 -20.84 2.87 -617.26 -1.77 -22.61 16 13 C -0.35 -19.20 8.41 84.11 0.71 -18.49 16 14 H 0.07 3.95 7.71 -2.91 -0.02 3.93 16 15 C 0.02 0.95 3.76 84.96 0.32 1.27 16 16 N -0.87 -43.56 10.27 21.68 0.22 -43.34 16 17 Si 0.98 40.89 29.56 68.60 2.03 42.92 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 C 0.08 3.46 2.96 44.99 0.13 3.60 16 22 C -0.11 -4.41 7.65 30.59 0.23 -4.18 16 23 C -0.20 -6.74 8.83 30.60 0.27 -6.47 16 24 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.09 3.24 6.66 -2.39 -0.02 3.23 16 27 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.09 1.91 7.22 -2.39 -0.02 1.89 16 29 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.19 6.43 2.75 -2.91 -0.01 6.42 16 33 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 34 H 0.10 4.44 6.73 -2.38 -0.02 4.43 16 35 H 0.08 3.36 6.20 -2.38 -0.01 3.35 16 36 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.13 3.32 7.66 -2.39 -0.02 3.30 16 38 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -67.47 311.19 4.59 -62.88 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 1.08 Total: 27.52 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.99 Total: -7.02 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -3.45 Total: -90.24 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.06 Total: -36.07 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -67.47 4.59 -62.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616842.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.701 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds