Wall clock time and date at job start Mon Mar 30 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00217 * 2 1 4 4 C 1.50694 * 109.47220 * 270.00318 * 3 2 1 5 5 H 1.07998 * 120.00491 * 359.97438 * 4 3 2 6 6 C 1.37887 * 120.00327 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99259 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00214 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47050 * 89.99969 * 8 6 4 10 10 H 1.48495 * 109.46751 * 209.99642 * 8 6 4 11 11 H 1.48497 * 109.47366 * 329.99863 * 8 6 4 12 12 C 1.34777 * 119.99636 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99967 * 180.02562 * 12 2 1 14 14 N 1.34782 * 120.00072 * 359.97438 * 12 2 1 15 15 C 1.39390 * 119.99645 * 175.12710 * 14 12 2 16 16 C 1.39051 * 119.69617 * 185.06882 * 15 14 12 17 17 C 1.38350 * 119.10308 * 179.72698 * 16 15 14 18 18 C 1.38842 * 118.49548 * 0.53767 * 17 16 15 19 19 C 1.50692 * 120.34553 * 179.70736 * 18 17 16 20 20 C 1.53006 * 117.50061 * 188.64454 * 19 18 17 21 21 C 1.53002 * 117.50315 * 120.02055 * 19 18 17 22 22 C 1.38064 * 119.31098 * 359.72556 * 18 17 16 23 23 N 1.31942 * 120.85147 * 359.97438 * 22 18 17 24 24 H 1.09004 * 109.46363 * 269.99960 * 1 2 3 25 25 H 1.09003 * 109.46898 * 29.99619 * 1 2 3 26 26 H 1.08993 * 109.47550 * 149.99650 * 1 2 3 27 27 H 1.08998 * 109.47483 * 30.00241 * 3 2 1 28 28 H 1.09002 * 109.47350 * 150.00346 * 3 2 1 29 29 H 0.97004 * 119.99501 * 180.02562 * 7 6 4 30 30 H 0.96994 * 119.99820 * 354.84868 * 14 12 2 31 31 H 1.08004 * 120.44531 * 0.02562 * 16 15 14 32 32 H 1.07995 * 120.75058 * 180.25973 * 17 16 15 33 33 H 1.09002 * 115.54883 * 334.34457 * 19 18 17 34 34 H 1.08994 * 117.49486 * 359.97438 * 20 19 18 35 35 H 1.08996 * 117.50066 * 145.01985 * 20 19 18 36 36 H 1.08999 * 117.49563 * 214.97952 * 21 19 18 37 37 H 1.08998 * 117.49457 * 0.02562 * 21 19 18 38 38 H 1.07998 * 119.57649 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5544 3.6175 -0.6730 8 14 3.4389 3.4164 -3.4339 9 1 2.3093 4.2597 -3.9009 10 1 4.6995 4.1988 -3.4961 11 1 3.5558 2.2191 -4.3046 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0001 14 7 1.4649 -2.3345 -0.0005 15 6 2.1581 -3.5394 -0.1036 16 6 1.4527 -4.7330 -0.2095 17 6 2.1530 -5.9213 -0.3169 18 6 3.5406 -5.8759 -0.3033 19 6 4.3450 -7.1456 -0.4110 20 6 5.8553 -7.0464 -0.1869 21 6 5.3043 -7.2759 -1.5957 22 6 4.1759 -4.6554 -0.1897 23 7 3.4815 -3.5374 -0.0949 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6086 2.0283 0.5138 28 1 3.1501 1.1383 0.5138 29 1 4.0313 4.4434 -0.8503 30 1 0.4979 -2.3361 0.0753 31 1 0.3726 -4.7320 -0.2128 32 1 1.6322 -6.8632 -0.4048 33 1 3.8434 -8.0504 -0.0677 34 1 6.2670 -6.0626 0.0380 35 1 6.3475 -7.8859 0.3039 36 1 5.4341 -8.2665 -2.0316 37 1 5.3540 -6.4430 -2.2970 38 1 5.2550 -4.6151 -0.1782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933969172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:54 Heat of formation + Delta-G solvation = 57.041707 kcal Electronic energy + Delta-G solvation = -20555.315241 eV Core-core repulsion = 17399.774643 eV Total energy + Delta-G solvation = -3155.540598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64660 -39.15657 -37.20653 -34.85090 -34.22861 -32.50233 -32.26339 -29.65168 -27.66533 -25.83794 -24.27982 -23.93505 -22.51930 -22.32176 -20.76900 -19.46871 -18.17304 -16.94377 -16.56610 -16.48045 -15.41339 -15.08127 -14.95252 -14.77950 -14.45091 -13.98838 -13.70386 -13.33346 -12.91726 -12.69128 -12.56459 -12.16747 -11.88294 -11.83517 -11.62204 -11.26415 -11.16372 -10.87156 -10.56178 -10.53539 -10.12614 -10.05920 -9.66990 -9.61043 -9.54284 -8.62652 -8.39509 -7.93416 -7.54839 -6.00281 -4.04594 1.22757 1.44485 3.03152 3.32798 3.39646 3.45138 3.55662 3.90683 4.24751 4.32488 4.45033 4.52092 4.70692 4.77595 4.83592 4.89809 5.03950 5.21263 5.28647 5.34001 5.47036 5.51065 5.62368 5.79135 5.82359 5.86008 5.96461 6.04377 6.13628 6.29249 6.48624 6.70660 7.05608 7.32870 7.54598 7.62791 7.97150 8.25878 8.27808 8.68281 8.96784 9.35957 9.60972 11.07639 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.004028 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.861540 B = 6949.812645 C = 7686.580827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.615 5.615 3 C 0.261 3.739 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.685 3.315 13 O -0.521 6.521 14 N -0.676 5.676 15 C 0.387 3.613 16 C -0.218 4.218 17 C -0.041 4.041 18 C -0.156 4.156 19 C -0.103 4.103 20 C -0.179 4.179 21 C -0.173 4.173 22 C 0.137 3.863 23 N -0.465 5.465 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.407 0.593 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 -20.955 1.630 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.353 5.353 3 C 0.142 3.858 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.386 3.614 13 O -0.391 6.391 14 N -0.326 5.326 15 C 0.154 3.846 16 C -0.242 4.242 17 C -0.067 4.067 18 C -0.160 4.160 19 C -0.122 4.122 20 C -0.216 4.216 21 C -0.210 4.210 22 C -0.022 4.022 23 N -0.178 5.178 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.244 0.756 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.836 -19.750 1.746 20.194 hybrid contribution -0.935 -0.379 -1.059 1.463 sum -4.770 -20.128 0.687 20.697 Atomic orbital electron populations 1.21592 0.81912 1.02371 1.00273 1.47555 1.05588 1.06288 1.75831 1.19227 0.92390 0.76786 0.97431 1.21465 1.36423 1.06160 0.92419 0.92545 1.24927 0.95346 0.96414 0.97406 1.69936 1.38480 1.14342 1.30677 0.86493 0.77646 0.78526 0.84731 1.20691 1.21064 1.19958 1.16051 0.85907 0.79882 0.79576 1.91015 1.10541 1.84544 1.52986 1.43184 1.10090 1.03729 1.75584 1.18328 0.88932 0.84923 0.92376 1.21359 1.00734 0.91708 1.10381 1.21012 0.93019 0.97629 0.95004 1.19955 0.94030 0.94845 1.07170 1.20786 0.91116 0.96327 1.03935 1.23075 0.95330 1.03597 0.99588 1.23056 1.03350 1.03171 0.91455 1.22602 1.00140 0.86258 0.93179 1.67852 1.05816 1.29661 1.14519 0.93738 0.90280 0.93291 0.94799 0.93657 0.92739 0.75560 0.84937 0.84920 0.87164 0.88165 0.88468 0.88609 0.88506 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.16 59.85 0.61 1.91 16 2 N -0.62 -13.52 2.86 -188.74 -0.54 -14.05 16 3 C 0.26 6.99 5.16 -5.20 -0.03 6.97 16 4 C -0.53 -15.27 9.39 -34.44 -0.32 -15.60 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.78 5.46 -17.81 -0.10 1.68 16 7 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 8 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.69 15.48 8.24 -86.91 -0.72 14.77 16 13 O -0.52 -14.27 14.18 5.29 0.08 -14.19 16 14 N -0.68 -11.60 5.22 -15.81 -0.08 -11.69 16 15 C 0.39 6.54 7.42 -154.71 -1.15 5.40 16 16 C -0.22 -2.68 9.94 -39.24 -0.39 -3.07 16 17 C -0.04 -0.45 9.88 -39.32 -0.39 -0.83 16 18 C -0.16 -1.88 5.63 -104.47 -0.59 -2.47 16 19 C -0.10 -0.95 6.06 -91.77 -0.56 -1.50 16 20 C -0.18 -1.53 9.87 -26.73 -0.26 -1.79 16 21 C -0.17 -1.49 10.17 -26.73 -0.27 -1.76 16 22 C 0.14 2.09 10.46 -17.57 -0.18 1.91 16 23 N -0.47 -8.99 7.89 -12.37 -0.10 -9.09 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 26 H 0.05 0.61 6.44 -51.93 -0.33 0.27 16 27 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.05 1.37 7.42 -51.93 -0.39 0.99 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.41 5.22 6.51 -40.82 -0.27 4.95 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.91 6.20 -51.93 -0.32 0.59 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.15 2.08 6.03 -52.49 -0.32 1.76 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -36.32 323.80 -9.36 -45.68 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.97 Total: 1.84 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -4.35 Total: 5.59 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.02 Total: -61.11 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.08 Total: -14.19 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.32 -9.36 -45.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933969172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.719 kcal (2) G-P(sol) polarization free energy of solvation -36.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds