Wall clock time and date at job start Mon Mar 30 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00217 * 2 1 4 4 C 1.50694 * 109.47220 * 270.00318 * 3 2 1 5 5 H 1.07998 * 120.00491 * 359.97438 * 4 3 2 6 6 C 1.37887 * 120.00327 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99259 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00214 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47050 * 89.99969 * 8 6 4 10 10 H 1.48495 * 109.46751 * 209.99642 * 8 6 4 11 11 H 1.48497 * 109.47366 * 329.99863 * 8 6 4 12 12 C 1.34777 * 119.99636 * 180.02562 * 2 1 3 13 13 O 1.21583 * 119.99967 * 180.02562 * 12 2 1 14 14 N 1.34782 * 120.00072 * 359.97438 * 12 2 1 15 15 C 1.39390 * 119.99645 * 175.12710 * 14 12 2 16 16 C 1.39051 * 119.69617 * 185.06882 * 15 14 12 17 17 C 1.38350 * 119.10308 * 179.72698 * 16 15 14 18 18 C 1.38842 * 118.49548 * 0.53767 * 17 16 15 19 19 C 1.50692 * 120.34553 * 179.70736 * 18 17 16 20 20 C 1.53006 * 117.50061 * 188.64454 * 19 18 17 21 21 C 1.53002 * 117.50315 * 120.02055 * 19 18 17 22 22 C 1.38064 * 119.31098 * 359.72556 * 18 17 16 23 23 N 1.31942 * 120.85147 * 359.97438 * 22 18 17 24 24 H 1.09004 * 109.46363 * 269.99960 * 1 2 3 25 25 H 1.09003 * 109.46898 * 29.99619 * 1 2 3 26 26 H 1.08993 * 109.47550 * 149.99650 * 1 2 3 27 27 H 1.08998 * 109.47483 * 30.00241 * 3 2 1 28 28 H 1.09002 * 109.47350 * 150.00346 * 3 2 1 29 29 H 0.97004 * 119.99501 * 180.02562 * 7 6 4 30 30 H 0.96994 * 119.99820 * 354.84868 * 14 12 2 31 31 H 1.08004 * 120.44531 * 0.02562 * 16 15 14 32 32 H 1.07995 * 120.75058 * 180.25973 * 17 16 15 33 33 H 1.09002 * 115.54883 * 334.34457 * 19 18 17 34 34 H 1.08994 * 117.49486 * 359.97438 * 20 19 18 35 35 H 1.08996 * 117.50066 * 145.01985 * 20 19 18 36 36 H 1.08999 * 117.49563 * 214.97952 * 21 19 18 37 37 H 1.08998 * 117.49457 * 0.02562 * 21 19 18 38 38 H 1.07998 * 119.57649 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5544 3.6175 -0.6730 8 14 3.4389 3.4164 -3.4339 9 1 2.3093 4.2597 -3.9009 10 1 4.6995 4.1988 -3.4961 11 1 3.5558 2.2191 -4.3046 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0001 14 7 1.4649 -2.3345 -0.0005 15 6 2.1581 -3.5394 -0.1036 16 6 1.4527 -4.7330 -0.2095 17 6 2.1530 -5.9213 -0.3169 18 6 3.5406 -5.8759 -0.3033 19 6 4.3450 -7.1456 -0.4110 20 6 5.8553 -7.0464 -0.1869 21 6 5.3043 -7.2759 -1.5957 22 6 4.1759 -4.6554 -0.1897 23 7 3.4815 -3.5374 -0.0949 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6086 2.0283 0.5138 28 1 3.1501 1.1383 0.5138 29 1 4.0313 4.4434 -0.8503 30 1 0.4979 -2.3361 0.0753 31 1 0.3726 -4.7320 -0.2128 32 1 1.6322 -6.8632 -0.4048 33 1 3.8434 -8.0504 -0.0677 34 1 6.2670 -6.0626 0.0380 35 1 6.3475 -7.8859 0.3039 36 1 5.4341 -8.2665 -2.0316 37 1 5.3540 -6.4430 -2.2970 38 1 5.2550 -4.6151 -0.1782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933969172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:53 Heat of formation + Delta-G solvation = 33.333125 kcal Electronic energy + Delta-G solvation = -20556.343322 eV Core-core repulsion = 17399.774643 eV Total energy + Delta-G solvation = -3156.568679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89234 -40.56737 -38.13001 -36.58360 -35.73228 -34.59055 -33.32774 -30.90876 -29.51188 -27.38706 -25.59800 -25.25879 -23.97447 -23.13879 -21.67577 -20.99148 -19.51476 -18.69955 -18.41664 -17.52424 -16.84476 -16.60976 -16.42293 -15.96735 -15.60942 -15.36124 -15.05485 -14.76767 -14.27666 -14.12106 -13.83740 -13.62504 -13.45421 -13.15293 -12.83877 -12.61871 -12.53390 -12.38186 -12.23065 -12.19744 -11.73510 -11.31285 -11.26706 -11.13038 -10.64081 -10.61784 -9.95712 -9.50350 -8.95119 -8.22073 -6.37119 0.14662 0.45617 1.34523 1.38474 1.48085 1.61731 2.21536 2.38552 2.82743 2.96088 3.06912 3.22070 3.54299 3.74476 3.95029 4.05407 4.07317 4.19629 4.25411 4.33427 4.43608 4.64986 4.76313 4.77608 4.85246 4.93581 4.99898 5.07360 5.19730 5.21907 5.28917 5.35609 5.43648 5.54516 5.75317 5.90807 5.96935 6.06283 6.71237 6.87292 7.28305 7.34981 7.74264 8.84440 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.004028 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.861540 B = 6949.812645 C = 7686.580827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.623 5.623 3 C 0.278 3.722 4 C -0.543 4.543 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.681 3.319 13 O -0.585 6.585 14 N -0.659 5.659 15 C 0.344 3.656 16 C -0.193 4.193 17 C -0.036 4.036 18 C -0.140 4.140 19 C -0.106 4.106 20 C -0.183 4.183 21 C -0.169 4.169 22 C 0.106 3.894 23 N -0.527 5.527 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.031 0.969 28 H -0.004 1.004 29 H 0.268 0.732 30 H 0.428 0.572 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 -23.902 0.555 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.360 5.360 3 C 0.156 3.844 4 C -0.582 4.582 5 H 0.067 0.933 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.184 1.184 10 H -0.205 1.205 11 H -0.203 1.203 12 C 0.382 3.618 13 O -0.459 6.459 14 N -0.312 5.312 15 C 0.112 3.888 16 C -0.217 4.217 17 C -0.062 4.062 18 C -0.144 4.144 19 C -0.124 4.124 20 C -0.220 4.220 21 C -0.206 4.206 22 C -0.052 4.052 23 N -0.241 5.241 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.014 0.986 29 H 0.077 0.923 30 H 0.269 0.731 31 H 0.192 0.808 32 H 0.198 0.802 33 H 0.158 0.842 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.177 -22.759 0.678 23.592 hybrid contribution -0.208 0.395 -0.680 0.813 sum -6.385 -22.364 -0.002 23.257 Atomic orbital electron populations 1.21919 0.77880 1.04038 1.02702 1.47423 1.08016 1.04712 1.75816 1.18663 0.90844 0.78983 0.95924 1.21708 1.36963 1.06457 0.93079 0.93275 1.25850 0.94816 0.96402 1.02023 1.70053 1.38915 1.14796 1.32967 0.85406 0.78254 0.78038 0.79015 1.18404 1.20487 1.20314 1.16283 0.85398 0.81153 0.78961 1.90962 1.13471 1.85787 1.55725 1.42727 1.10801 1.02299 1.75345 1.18735 0.88815 0.85878 0.95333 1.21765 1.02651 0.89996 1.07256 1.21590 0.92435 0.99017 0.93171 1.20294 0.95253 0.94649 1.04177 1.20946 0.91159 0.95786 1.04558 1.23143 0.95219 1.03638 0.99957 1.23085 1.02730 1.03725 0.91053 1.22683 1.00198 0.86970 0.95338 1.67594 1.08005 1.32312 1.16204 0.90834 0.90778 0.89479 0.95090 0.98617 0.92345 0.73097 0.80777 0.80173 0.84182 0.89773 0.86406 0.86256 0.90339 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.16 127.77 1.30 3.60 16 2 N -0.62 -28.12 2.86 -869.32 -2.48 -30.61 16 3 C 0.28 15.67 5.16 85.63 0.44 16.11 16 4 C -0.54 -32.67 9.39 25.60 0.24 -32.43 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.48 5.46 84.66 0.46 0.94 16 7 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 8 Si 0.97 46.48 29.54 68.60 2.03 48.50 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 C 0.68 32.01 8.24 179.05 1.48 33.49 16 13 O -0.58 -34.36 14.18 -3.98 -0.06 -34.41 16 14 N -0.66 -22.45 5.22 -322.19 -1.68 -24.13 16 15 C 0.34 11.54 7.42 132.92 0.99 12.52 16 16 C -0.19 -4.14 9.94 22.49 0.22 -3.91 16 17 C -0.04 -0.66 9.88 22.44 0.22 -0.43 16 18 C -0.14 -3.13 5.63 -19.76 -0.11 -3.24 16 19 C -0.11 -1.65 6.06 -11.54 -0.07 -1.72 16 20 C -0.18 -2.86 9.87 30.60 0.30 -2.56 16 21 C -0.17 -2.56 10.17 30.60 0.31 -2.25 16 22 C 0.11 3.35 10.46 84.63 0.89 4.23 16 23 N -0.53 -21.40 7.89 -193.04 -1.52 -22.93 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 26 H 0.09 1.92 6.44 -2.39 -0.02 1.90 16 27 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 28 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.43 10.04 6.51 -92.71 -0.60 9.43 16 31 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.60 6.20 -2.39 -0.01 1.58 16 35 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.15 4.46 6.03 -2.91 -0.02 4.44 16 Total: -1.00 -86.41 323.80 3.71 -82.70 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.48 Total: 13.85 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 6.67 Total: 24.34 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -5.40 Total: -134.97 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.06 Total: -34.41 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -86.41 3.71 -82.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933969172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.032 kcal (2) G-P(sol) polarization free energy of solvation -86.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds