Wall clock time and date at job start Mon Mar 30 2020 01:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46893 * 2 1 4 4 N 1.46502 * 109.46939 * 240.00423 * 2 1 3 5 5 C 1.34774 * 120.00189 * 84.99670 * 4 2 1 6 6 O 1.21516 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.48174 * 119.99900 * 179.97438 * 5 4 2 8 8 C 1.39312 * 119.72277 * 180.02562 * 7 5 4 9 9 C 1.38583 * 119.05865 * 179.70020 * 8 7 5 10 10 C 1.38625 * 118.49011 * 0.54445 * 9 8 7 11 11 C 1.38559 * 119.34838 * 359.45291 * 10 9 8 12 12 N 1.31520 * 120.90327 * 0.27798 * 11 10 9 13 13 C 1.52995 * 109.47176 * 120.00473 * 2 1 3 14 14 C 1.53945 * 113.73860 * 281.81972 * 13 2 1 15 15 N 1.47817 * 86.03576 * 222.08592 * 14 13 2 16 16 C 1.36939 * 134.45496 * 204.65204 * 15 14 13 17 17 H 1.07999 * 119.99617 * 179.86474 * 16 15 14 18 18 C 1.38812 * 120.00203 * 359.85893 * 16 15 14 19 19 N 1.31620 * 120.00107 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47265 * 60.00430 * 20 18 16 22 22 H 1.48501 * 109.47225 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47413 * 300.00251 * 20 18 16 24 24 C 1.47576 * 91.05122 * 24.55085 * 15 14 13 25 25 H 1.09001 * 109.46716 * 300.07407 * 1 2 3 26 26 H 1.09007 * 109.47162 * 60.06560 * 1 2 3 27 27 H 1.08994 * 109.47024 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99947 * 265.00391 * 4 2 1 29 29 H 1.08004 * 120.46830 * 359.95878 * 8 7 5 30 30 H 1.08005 * 120.75903 * 180.29140 * 9 8 7 31 31 H 1.07999 * 120.32813 * 179.73202 * 10 9 8 32 32 H 1.08002 * 119.54358 * 180.25683 * 11 10 9 33 33 H 1.09000 * 112.94732 * 53.41065 * 13 2 1 34 34 H 1.09001 * 113.77017 * 336.34808 * 14 13 2 35 35 H 1.09001 * 113.76816 * 107.75126 * 14 13 2 36 36 H 0.96991 * 120.00160 * 180.02562 * 19 18 16 37 37 H 1.09007 * 113.76839 * 221.15427 * 24 15 14 38 38 H 1.08999 * 113.87438 * 89.76462 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8584 1.1610 -2.4117 7 6 2.6414 -0.7165 -3.5669 8 6 2.7727 -0.0158 -4.7638 9 6 3.2423 -0.6810 -5.8852 10 6 3.5536 -2.0272 -5.7734 11 6 3.3985 -2.6609 -4.5511 12 7 2.9559 -2.0041 -3.5011 13 6 2.0400 -0.7213 1.2491 14 6 1.9745 0.1328 2.5282 15 7 3.3099 -0.4180 2.8415 16 6 4.0195 -0.6147 3.9961 17 1 5.0067 -1.0507 3.9555 18 6 3.4699 -0.2535 5.2186 19 7 2.2667 0.2776 5.2680 20 14 4.4382 -0.5211 6.7934 21 1 5.7080 0.2462 6.7303 22 1 3.6361 -0.0550 7.9530 23 1 4.7406 -1.9666 6.9490 24 6 3.5702 -0.6730 1.4114 25 1 -0.3633 0.5150 0.8893 26 1 -0.3634 0.5128 -0.8906 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 -1.1528 29 1 2.5160 1.0320 -4.8159 30 1 3.3592 -0.1634 -6.8259 31 1 3.9178 -2.5756 -6.6296 32 1 3.6441 -3.7086 -4.4594 33 1 1.6176 -1.7193 1.3658 34 1 1.9752 1.2065 2.3400 35 1 1.1955 -0.1778 3.2245 36 1 1.8828 0.5303 6.1222 37 1 4.0628 -1.6259 1.2177 38 1 4.0408 0.1623 0.8929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969198386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:00 Heat of formation + Delta-G solvation = 53.580489 kcal Electronic energy + Delta-G solvation = -20567.820296 eV Core-core repulsion = 17412.129608 eV Total energy + Delta-G solvation = -3155.690688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72086 -39.22884 -37.87925 -34.81759 -32.97875 -32.09950 -31.68986 -30.16434 -27.43225 -25.26630 -24.51626 -23.88143 -23.60709 -21.47113 -20.35197 -19.31554 -17.90570 -16.93763 -16.72410 -16.19389 -15.64046 -15.14905 -15.04002 -14.72325 -14.19483 -13.91338 -13.69722 -13.53956 -13.39965 -13.05473 -12.31224 -12.19250 -12.01321 -11.54376 -11.35534 -11.18037 -10.84203 -10.65956 -10.34716 -10.29672 -10.26302 -9.93732 -9.77109 -9.57048 -9.46712 -9.36254 -8.79035 -8.73802 -6.82762 -5.72488 -3.04295 0.44207 0.93641 2.73072 3.18829 3.42615 3.46435 3.47818 3.72517 3.99620 4.49282 4.50491 4.62387 4.69862 4.79236 5.13120 5.18855 5.25068 5.43718 5.45820 5.59064 5.67070 5.72273 5.81008 5.87356 6.06511 6.13023 6.27926 6.32724 6.42316 6.51457 6.63458 6.68351 6.85326 7.26946 7.41522 7.42637 7.60211 7.76493 8.02668 8.30740 9.09142 9.75247 10.65195 11.44841 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032709 B = 0.003524 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.837957 B = 7944.573213 C = 8436.074796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.089 0.911 4 N -0.695 5.695 5 C 0.566 3.434 6 O -0.538 6.538 7 C 0.084 3.916 8 C -0.115 4.115 9 C -0.083 4.083 10 C -0.156 4.156 11 C 0.098 3.902 12 N -0.457 5.457 13 C -0.146 4.146 14 C 0.176 3.824 15 N -0.612 5.612 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.126 3.874 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.409 0.591 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.041 0.959 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -4.995 -22.471 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.107 0.893 4 N -0.345 5.345 5 C 0.350 3.650 6 O -0.415 6.415 7 C -0.054 4.054 8 C -0.135 4.135 9 C -0.109 4.109 10 C -0.176 4.176 11 C -0.062 4.062 12 N -0.169 5.169 13 C -0.167 4.167 14 C 0.050 3.950 15 N -0.338 5.338 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.001 4.001 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.245 0.755 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.108 0.892 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.183 -4.544 -21.276 21.787 hybrid contribution 0.858 -0.098 -0.015 0.863 sum -0.326 -4.642 -21.290 21.793 Atomic orbital electron populations 1.22110 0.95270 1.01903 1.02301 1.21204 0.93944 0.97506 0.83007 0.89333 1.46008 1.64746 1.14733 1.09003 1.17879 0.78208 0.86093 0.82786 1.90779 1.50931 1.15064 1.84706 1.21331 0.99096 0.90511 0.94474 1.22169 0.97082 1.02145 0.92142 1.21635 0.95900 0.94522 0.98849 1.22377 1.00011 0.95634 0.99538 1.22830 0.95044 1.00337 0.87981 1.67583 1.09164 1.07949 1.32205 1.23855 0.97624 1.00798 0.94378 1.22234 0.89610 0.93869 0.89266 1.45978 1.16349 1.71871 0.99646 1.18988 0.98437 1.34773 0.82867 0.90375 1.24773 0.97074 1.01183 0.97450 1.69796 1.15348 1.47329 1.24460 0.86202 0.78876 0.77813 0.82882 1.21248 1.21561 1.21112 1.22530 0.93113 0.97711 0.86698 0.90939 0.92835 0.92664 0.75517 0.83402 0.84157 0.84322 0.82026 0.89228 0.95402 0.90666 0.93606 0.94063 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.44 37.16 0.35 -1.96 16 2 C 0.15 2.41 2.29 -67.93 -0.16 2.25 16 3 H 0.09 1.62 7.48 -51.93 -0.39 1.24 16 4 N -0.70 -10.24 4.93 -54.64 -0.27 -10.51 16 5 C 0.57 8.67 7.78 -12.18 -0.09 8.57 16 6 O -0.54 -9.64 15.99 5.35 0.09 -9.55 16 7 C 0.08 1.08 6.75 -83.01 -0.56 0.52 16 8 C -0.11 -1.20 9.63 -39.05 -0.38 -1.58 16 9 C -0.08 -0.62 10.17 -39.31 -0.40 -1.02 16 10 C -0.16 -1.05 10.11 -39.32 -0.40 -1.45 16 11 C 0.10 0.82 11.18 -17.57 -0.20 0.63 16 12 N -0.46 -5.32 9.54 -9.80 -0.09 -5.42 16 13 C -0.15 -2.73 3.35 -89.69 -0.30 -3.04 16 14 C 0.18 4.17 6.98 -2.84 -0.02 4.15 16 15 N -0.61 -16.11 3.70 -177.69 -0.66 -16.77 16 16 C -0.22 -6.41 10.70 -15.06 -0.16 -6.58 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.68 11.39 55.49 0.63 -27.05 16 20 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.13 2.65 8.38 -2.97 -0.02 2.62 16 25 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.41 5.54 7.93 -40.82 -0.32 5.21 16 29 H 0.15 1.51 7.64 -52.48 -0.40 1.11 16 30 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 31 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 35 H 0.08 1.94 7.16 -51.93 -0.37 1.57 16 36 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -33.71 326.00 -8.09 -41.81 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.25 Total: 2.33 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.43 Total: 2.78 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.39 Total: -59.74 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.71 -8.09 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969198386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.388 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds