Wall clock time and date at job start Mon Mar 30 2020 01:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46893 * 2 1 4 4 N 1.46502 * 109.46939 * 240.00423 * 2 1 3 5 5 C 1.34774 * 120.00189 * 84.99670 * 4 2 1 6 6 O 1.21516 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.48174 * 119.99900 * 179.97438 * 5 4 2 8 8 C 1.39312 * 119.72277 * 180.02562 * 7 5 4 9 9 C 1.38583 * 119.05865 * 179.70020 * 8 7 5 10 10 C 1.38625 * 118.49011 * 0.54445 * 9 8 7 11 11 C 1.38559 * 119.34838 * 359.45291 * 10 9 8 12 12 N 1.31520 * 120.90327 * 0.27798 * 11 10 9 13 13 C 1.52995 * 109.47176 * 120.00473 * 2 1 3 14 14 C 1.53945 * 113.73860 * 281.81972 * 13 2 1 15 15 N 1.47817 * 86.03576 * 222.08592 * 14 13 2 16 16 C 1.36939 * 134.45496 * 204.65204 * 15 14 13 17 17 H 1.07999 * 119.99617 * 179.86474 * 16 15 14 18 18 C 1.38812 * 120.00203 * 359.85893 * 16 15 14 19 19 N 1.31620 * 120.00107 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47265 * 60.00430 * 20 18 16 22 22 H 1.48501 * 109.47225 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47413 * 300.00251 * 20 18 16 24 24 C 1.47576 * 91.05122 * 24.55085 * 15 14 13 25 25 H 1.09001 * 109.46716 * 300.07407 * 1 2 3 26 26 H 1.09007 * 109.47162 * 60.06560 * 1 2 3 27 27 H 1.08994 * 109.47024 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99947 * 265.00391 * 4 2 1 29 29 H 1.08004 * 120.46830 * 359.95878 * 8 7 5 30 30 H 1.08005 * 120.75903 * 180.29140 * 9 8 7 31 31 H 1.07999 * 120.32813 * 179.73202 * 10 9 8 32 32 H 1.08002 * 119.54358 * 180.25683 * 11 10 9 33 33 H 1.09000 * 112.94732 * 53.41065 * 13 2 1 34 34 H 1.09001 * 113.77017 * 336.34808 * 14 13 2 35 35 H 1.09001 * 113.76816 * 107.75126 * 14 13 2 36 36 H 0.96991 * 120.00160 * 180.02562 * 19 18 16 37 37 H 1.09007 * 113.76839 * 221.15427 * 24 15 14 38 38 H 1.08999 * 113.87438 * 89.76462 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8584 1.1610 -2.4117 7 6 2.6414 -0.7165 -3.5669 8 6 2.7727 -0.0158 -4.7638 9 6 3.2423 -0.6810 -5.8852 10 6 3.5536 -2.0272 -5.7734 11 6 3.3985 -2.6609 -4.5511 12 7 2.9559 -2.0041 -3.5011 13 6 2.0400 -0.7213 1.2491 14 6 1.9745 0.1328 2.5282 15 7 3.3099 -0.4180 2.8415 16 6 4.0195 -0.6147 3.9961 17 1 5.0067 -1.0507 3.9555 18 6 3.4699 -0.2535 5.2186 19 7 2.2667 0.2776 5.2680 20 14 4.4382 -0.5211 6.7934 21 1 5.7080 0.2462 6.7303 22 1 3.6361 -0.0550 7.9530 23 1 4.7406 -1.9666 6.9490 24 6 3.5702 -0.6730 1.4114 25 1 -0.3633 0.5150 0.8893 26 1 -0.3634 0.5128 -0.8906 27 1 -0.3633 -1.0276 0.0005 28 1 2.2490 -1.6317 -1.1528 29 1 2.5160 1.0320 -4.8159 30 1 3.3592 -0.1634 -6.8259 31 1 3.9178 -2.5756 -6.6296 32 1 3.6441 -3.7086 -4.4594 33 1 1.6176 -1.7193 1.3658 34 1 1.9752 1.2065 2.3400 35 1 1.1955 -0.1778 3.2245 36 1 1.8828 0.5303 6.1222 37 1 4.0628 -1.6259 1.2177 38 1 4.0408 0.1623 0.8929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969198386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:00 Heat of formation + Delta-G solvation = 30.391193 kcal Electronic energy + Delta-G solvation = -20568.825859 eV Core-core repulsion = 17412.129608 eV Total energy + Delta-G solvation = -3156.696251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63196 -40.44980 -39.41327 -36.25864 -34.22779 -33.57502 -32.59581 -31.40687 -29.34001 -26.72431 -25.99464 -25.33357 -24.38338 -22.89934 -21.57056 -20.90813 -19.03948 -18.74473 -17.80378 -17.10110 -16.89165 -16.57336 -16.19912 -16.02134 -15.82085 -15.27873 -14.88683 -14.81075 -14.44372 -14.13201 -13.98363 -13.39559 -13.27512 -13.10594 -12.96165 -12.86694 -12.66528 -12.42312 -12.06747 -11.82505 -11.63036 -11.31768 -11.19436 -10.91922 -10.86456 -10.49475 -10.27255 -9.99132 -8.93316 -7.90788 -5.24787 -0.32155 0.30000 1.44993 1.48950 1.55108 1.74389 2.06042 2.47283 2.91893 3.15920 3.28795 3.37537 3.68956 3.90223 3.94444 4.01263 4.09414 4.14001 4.25012 4.41435 4.53670 4.55885 4.74650 4.80671 4.82311 4.84480 4.92484 5.03726 5.12563 5.20028 5.23288 5.28272 5.48273 5.52633 5.62921 5.68344 5.93081 6.44346 6.84881 6.91352 7.16322 7.59714 8.55807 9.26089 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032709 B = 0.003524 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.837957 B = 7944.573213 C = 8436.074796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 H 0.065 0.935 4 N -0.690 5.690 5 C 0.564 3.436 6 O -0.574 6.574 7 C 0.052 3.948 8 C -0.125 4.125 9 C -0.080 4.080 10 C -0.136 4.136 11 C 0.088 3.912 12 N -0.479 5.479 13 C -0.110 4.110 14 C 0.173 3.827 15 N -0.643 5.643 16 C -0.241 4.241 17 H 0.083 0.917 18 C -0.066 4.066 19 N -0.953 5.953 20 Si 0.981 3.019 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.127 3.873 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.417 0.583 29 H 0.141 0.859 30 H 0.174 0.826 31 H 0.181 0.819 32 H 0.191 0.809 33 H 0.104 0.896 34 H 0.014 0.986 35 H 0.049 0.951 36 H 0.250 0.750 37 H 0.058 0.942 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -6.945 -24.793 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.054 3.946 3 H 0.083 0.917 4 N -0.340 5.340 5 C 0.350 3.650 6 O -0.454 6.454 7 C -0.084 4.084 8 C -0.146 4.146 9 C -0.105 4.105 10 C -0.155 4.155 11 C -0.072 4.072 12 N -0.191 5.191 13 C -0.130 4.130 14 C 0.047 3.953 15 N -0.369 5.369 16 C -0.370 4.370 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.602 5.602 20 Si 0.809 3.191 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.199 1.199 24 C 0.002 3.998 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.254 0.746 29 H 0.159 0.841 30 H 0.192 0.808 31 H 0.198 0.802 32 H 0.208 0.792 33 H 0.122 0.878 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.153 -6.518 -23.631 24.514 hybrid contribution 0.604 0.461 0.553 0.940 sum 0.451 -6.057 -23.078 23.864 Atomic orbital electron populations 1.22039 0.93737 1.02969 1.02128 1.20875 0.95014 0.95977 0.82772 0.91683 1.45844 1.64797 1.14922 1.08425 1.18353 0.77329 0.85785 0.83538 1.90745 1.52564 1.16647 1.85406 1.20953 1.02102 0.91492 0.93896 1.22272 0.97635 1.02088 0.92621 1.22050 0.94448 0.95064 0.98944 1.22856 0.97343 0.95261 1.00042 1.23457 0.94201 1.01578 0.87956 1.67499 1.10125 1.07467 1.34039 1.23457 0.95971 1.00408 0.93117 1.22131 0.88191 0.93738 0.91238 1.46398 1.17325 1.72165 1.01048 1.19415 0.98871 1.34454 0.84213 0.89971 1.25657 0.98174 1.01411 1.00709 1.69991 1.16863 1.48511 1.24788 0.85118 0.77397 0.78133 0.78463 1.20578 1.21861 1.19900 1.22645 0.94903 0.98231 0.83989 0.91300 0.92816 0.90942 0.74626 0.84118 0.80826 0.80212 0.79173 0.87787 0.96849 0.93258 0.94143 0.92376 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 9.44 71.98 0.68 -3.72 16 2 C 0.16 5.23 2.29 44.99 0.10 5.33 16 3 H 0.06 2.48 7.48 -2.39 -0.02 2.47 16 4 N -0.69 -20.26 4.93 -445.09 -2.20 -22.46 16 5 C 0.56 17.54 7.78 86.88 0.68 18.22 16 6 O -0.57 -21.33 15.99 -3.77 -0.06 -21.39 16 7 C 0.05 1.31 6.75 41.91 0.28 1.60 16 8 C -0.12 -2.51 9.63 22.61 0.22 -2.29 16 9 C -0.08 -0.93 10.17 22.44 0.23 -0.70 16 10 C -0.14 -1.24 10.11 22.44 0.23 -1.01 16 11 C 0.09 1.20 11.18 84.82 0.95 2.15 16 12 N -0.48 -10.42 9.54 -184.91 -1.76 -12.18 16 13 C -0.11 -4.10 3.35 -10.13 -0.03 -4.14 16 14 C 0.17 8.46 6.98 86.44 0.60 9.06 16 15 N -0.64 -34.38 3.70 -716.09 -2.65 -37.04 16 16 C -0.24 -14.03 10.70 84.03 0.90 -13.13 16 17 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 18 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 19 N -0.95 -58.67 11.39 21.65 0.25 -58.42 16 20 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 C 0.13 5.37 8.38 86.49 0.72 6.09 16 25 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 26 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.42 10.95 7.93 -92.71 -0.74 10.21 16 29 H 0.14 2.90 7.64 -2.91 -0.02 2.88 16 30 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 31 H 0.18 0.19 8.06 -2.91 -0.02 0.16 16 32 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.01 0.70 8.03 -2.39 -0.02 0.68 16 35 H 0.05 2.65 7.16 -2.39 -0.02 2.63 16 36 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.03 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -75.41 326.00 1.95 -73.46 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.33 Total: 15.32 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.02 Total: 14.04 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -6.37 Total: -130.10 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -75.41 1.95 -73.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969198386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.852 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds