Wall clock time and date at job start Mon Mar 30 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21514 * 119.99547 * 359.97438 * 5 4 2 7 7 C 1.48148 * 119.99783 * 180.02562 * 5 4 2 8 8 C 1.39809 * 120.92341 * 359.71415 * 7 5 4 9 9 C 1.38151 * 119.00205 * 179.80073 * 8 7 5 10 10 N 1.31816 * 120.89106 * 0.48716 * 9 8 7 11 11 C 1.31813 * 122.05283 * 359.74376 * 10 9 8 12 12 C 1.38149 * 120.89296 * 0.02562 * 11 10 9 13 13 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 14 14 C 1.53486 * 114.20850 * 60.00280 * 13 2 1 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 2 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 27 27 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 28 28 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 29 29 H 1.08006 * 120.50283 * 0.02562 * 8 7 5 30 30 H 1.07998 * 119.55664 * 180.23293 * 9 8 7 31 31 H 1.08001 * 119.55251 * 179.97438 * 11 10 9 32 32 H 1.07995 * 120.49637 * 180.02562 * 12 11 10 33 33 H 1.08998 * 113.41116 * 286.79710 * 13 2 1 34 34 H 1.09003 * 113.46770 * 332.73878 * 14 13 2 35 35 H 1.09004 * 113.52153 * 202.31032 * 14 13 2 36 36 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 37 37 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 38 38 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8585 1.1608 2.4116 7 6 2.6414 -0.7166 3.5666 8 6 2.9743 -2.0739 3.5269 9 6 3.4354 -2.6844 4.6772 10 7 3.5536 -2.0073 5.8020 11 6 3.2464 -0.7281 5.8840 12 6 2.7822 -0.0380 4.7809 13 6 2.0399 -0.7213 -1.2493 14 6 1.5898 -0.0846 -2.5714 15 7 2.7723 0.7864 -2.4946 16 6 3.1105 2.0324 -2.9511 17 1 2.3637 2.6574 -3.4180 18 6 4.4131 2.4918 -2.8140 19 7 4.7655 3.6412 -3.3498 20 14 5.6662 1.4788 -1.8688 21 1 7.0008 2.1220 -1.9706 22 1 5.2629 1.3987 -0.4418 23 1 5.7308 0.1107 -2.4425 24 6 3.4340 -0.2723 -1.7172 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6318 1.1526 29 1 2.8760 -2.6359 2.6098 30 1 3.6987 -3.7316 4.6557 31 1 3.3583 -0.2127 6.8265 32 1 2.5328 1.0101 4.8552 33 1 1.9117 -1.8029 -1.2076 34 1 0.6466 0.4562 -2.4938 35 1 1.6122 -0.7736 -3.4158 36 1 4.1374 4.1310 -3.9035 37 1 3.9431 -1.0113 -2.3358 38 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969202746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:15 Heat of formation + Delta-G solvation = 65.323275 kcal Electronic energy + Delta-G solvation = -21066.832912 eV Core-core repulsion = 17911.651429 eV Total energy + Delta-G solvation = -3155.181482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77086 -39.58008 -38.44876 -34.98525 -33.09579 -32.33899 -31.54914 -30.30284 -27.85375 -25.71668 -24.92473 -23.80520 -23.43944 -21.58548 -20.61133 -19.37921 -18.03729 -17.41187 -16.87910 -16.00010 -15.96003 -15.60017 -15.09091 -15.03395 -14.37746 -14.04685 -13.93731 -13.82101 -13.46822 -13.25522 -13.14168 -12.31257 -12.06210 -11.97273 -11.51690 -11.31426 -11.01511 -10.66297 -10.38733 -10.31202 -10.14175 -10.12452 -9.68676 -9.48867 -9.24597 -9.13350 -8.99626 -8.87470 -7.16244 -6.27703 -3.22075 0.50172 0.80960 2.82799 3.02456 3.39566 3.44473 3.64199 3.65044 4.13107 4.36733 4.50769 4.60457 4.68990 4.72771 4.79825 4.89065 5.01175 5.22079 5.43991 5.45965 5.54517 5.55433 5.62878 5.79216 5.81545 5.86912 6.01726 6.16432 6.22479 6.26551 6.30543 6.36660 6.45835 6.56203 6.84816 7.11746 7.46864 7.61210 8.15950 8.25359 8.98967 9.51304 10.36915 11.22261 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.005080 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.554160 B = 5510.945350 C = 6053.400032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.105 0.895 4 N -0.713 5.713 5 C 0.553 3.447 6 O -0.522 6.522 7 C -0.081 4.081 8 C -0.143 4.143 9 C 0.095 3.905 10 N -0.474 5.474 11 C 0.095 3.905 12 C -0.116 4.116 13 C -0.142 4.142 14 C 0.131 3.869 15 N -0.626 5.626 16 C -0.303 4.303 17 H 0.083 0.917 18 C -0.023 4.023 19 N -0.934 5.934 20 Si 1.068 2.932 21 H -0.295 1.295 22 H -0.293 1.293 23 H -0.288 1.288 24 C 0.099 3.901 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.396 0.604 29 H 0.140 0.860 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.046 0.954 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 -15.447 14.451 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.123 0.877 4 N -0.364 5.364 5 C 0.339 3.661 6 O -0.398 6.398 7 C -0.092 4.092 8 C -0.164 4.164 9 C -0.062 4.062 10 N -0.183 5.183 11 C -0.061 4.061 12 C -0.137 4.137 13 C -0.162 4.162 14 C 0.004 3.996 15 N -0.355 5.355 16 C -0.430 4.430 17 H 0.101 0.899 18 C -0.222 4.222 19 N -0.577 5.577 20 Si 0.901 3.099 21 H -0.222 1.222 22 H -0.222 1.222 23 H -0.215 1.215 24 C -0.027 4.027 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.231 0.769 29 H 0.157 0.843 30 H 0.179 0.821 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.558 -14.731 15.645 21.967 hybrid contribution -1.701 -0.136 -1.571 2.319 sum -6.259 -14.867 14.074 21.407 Atomic orbital electron populations 1.22111 0.95152 1.01550 1.02688 1.20720 0.93578 0.98242 0.81291 0.87700 1.46007 1.66793 1.13851 1.09747 1.18164 0.78353 0.86606 0.83025 1.90816 1.49234 1.15070 1.84683 1.20506 0.99557 0.94292 0.94879 1.22376 0.99051 0.94317 1.00624 1.22753 0.95453 1.00346 0.87654 1.67559 1.13725 1.08975 1.28062 1.22820 0.94685 0.90096 0.98546 1.22375 0.97049 1.02247 0.92026 1.23210 0.99579 0.98239 0.95213 1.22355 0.92759 0.91899 0.92601 1.46027 1.13185 1.12610 1.63687 1.20148 0.96416 0.88593 1.37805 0.89909 1.25654 0.96051 0.99141 1.01336 1.70907 1.37613 1.15078 1.34064 0.83745 0.76025 0.74542 0.75582 1.22239 1.22166 1.21526 1.22828 0.93996 0.91318 0.94508 0.92834 0.92461 0.90950 0.76904 0.84251 0.82121 0.81980 0.83325 0.90403 0.93191 0.94171 0.92912 0.93638 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.29 37.16 0.35 -1.80 16 2 C 0.17 2.64 2.43 -67.93 -0.16 2.47 16 3 H 0.11 2.22 7.36 -51.93 -0.38 1.83 16 4 N -0.71 -9.52 5.04 -54.65 -0.28 -9.79 16 5 C 0.55 8.35 7.76 -12.19 -0.09 8.25 16 6 O -0.52 -10.05 16.11 5.35 0.09 -9.96 16 7 C -0.08 -0.97 5.91 -104.65 -0.62 -1.59 16 8 C -0.14 -1.30 9.62 -39.03 -0.38 -1.67 16 9 C 0.09 0.83 11.17 -17.59 -0.20 0.64 16 10 N -0.47 -5.00 10.33 -13.30 -0.14 -5.13 16 11 C 0.10 0.93 11.17 -17.59 -0.20 0.73 16 12 C -0.12 -1.30 9.68 -39.02 -0.38 -1.68 16 13 C -0.14 -2.25 3.73 -89.97 -0.34 -2.58 16 14 C 0.13 2.43 8.08 -8.52 -0.07 2.36 16 15 N -0.63 -15.17 3.49 -184.63 -0.64 -15.81 16 16 C -0.30 -8.81 11.08 -15.06 -0.17 -8.98 16 17 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 18 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 19 N -0.93 -30.05 13.70 55.49 0.76 -29.29 16 20 Si 1.07 27.51 25.16 -169.99 -4.28 23.23 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.29 -7.34 6.51 56.52 0.37 -6.97 16 23 H -0.29 -6.82 6.20 56.52 0.35 -6.47 16 24 C 0.10 2.03 5.24 -8.38 -0.04 1.98 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.01 6.50 -51.93 -0.34 0.68 16 28 H 0.40 3.84 6.74 -40.82 -0.28 3.57 16 29 H 0.14 0.86 6.54 -52.48 -0.34 0.52 16 30 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.15 1.64 7.74 -52.49 -0.41 1.23 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.89 6.43 -51.93 -0.33 0.56 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 37 H 0.05 0.90 7.66 -51.93 -0.40 0.51 16 38 H 0.05 1.15 4.71 -51.93 -0.24 0.91 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -36.04 313.47 -7.07 -43.11 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.92 Total: 1.60 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.39 Total: -2.67 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.30 Total: -60.03 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 27.51 SS G_CDS: -4.28 Total: 23.23 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.04 -7.07 -43.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969202746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.435 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds