Wall clock time and date at job start Mon Mar 30 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21514 * 119.99547 * 359.97438 * 5 4 2 7 7 C 1.48148 * 119.99783 * 180.02562 * 5 4 2 8 8 C 1.39809 * 120.92341 * 359.71415 * 7 5 4 9 9 C 1.38151 * 119.00205 * 179.80073 * 8 7 5 10 10 N 1.31816 * 120.89106 * 0.48716 * 9 8 7 11 11 C 1.31813 * 122.05283 * 359.74376 * 10 9 8 12 12 C 1.38149 * 120.89296 * 0.02562 * 11 10 9 13 13 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 14 14 C 1.53486 * 114.20850 * 60.00280 * 13 2 1 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 2 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 27 27 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 28 28 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 29 29 H 1.08006 * 120.50283 * 0.02562 * 8 7 5 30 30 H 1.07998 * 119.55664 * 180.23293 * 9 8 7 31 31 H 1.08001 * 119.55251 * 179.97438 * 11 10 9 32 32 H 1.07995 * 120.49637 * 180.02562 * 12 11 10 33 33 H 1.08998 * 113.41116 * 286.79710 * 13 2 1 34 34 H 1.09003 * 113.46770 * 332.73878 * 14 13 2 35 35 H 1.09004 * 113.52153 * 202.31032 * 14 13 2 36 36 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 37 37 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 38 38 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8585 1.1608 2.4116 7 6 2.6414 -0.7166 3.5666 8 6 2.9743 -2.0739 3.5269 9 6 3.4354 -2.6844 4.6772 10 7 3.5536 -2.0073 5.8020 11 6 3.2464 -0.7281 5.8840 12 6 2.7822 -0.0380 4.7809 13 6 2.0399 -0.7213 -1.2493 14 6 1.5898 -0.0846 -2.5714 15 7 2.7723 0.7864 -2.4946 16 6 3.1105 2.0324 -2.9511 17 1 2.3637 2.6574 -3.4180 18 6 4.4131 2.4918 -2.8140 19 7 4.7655 3.6412 -3.3498 20 14 5.6662 1.4788 -1.8688 21 1 7.0008 2.1220 -1.9706 22 1 5.2629 1.3987 -0.4418 23 1 5.7308 0.1107 -2.4425 24 6 3.4340 -0.2723 -1.7172 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6318 1.1526 29 1 2.8760 -2.6359 2.6098 30 1 3.6987 -3.7316 4.6557 31 1 3.3583 -0.2127 6.8265 32 1 2.5328 1.0101 4.8552 33 1 1.9117 -1.8029 -1.2076 34 1 0.6466 0.4562 -2.4938 35 1 1.6122 -0.7736 -3.4158 36 1 4.1374 4.1310 -3.9035 37 1 3.9431 -1.0113 -2.3358 38 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969202746.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:15 Heat of formation + Delta-G solvation = 37.415388 kcal Electronic energy + Delta-G solvation = -21068.043088 eV Core-core repulsion = 17911.651429 eV Total energy + Delta-G solvation = -3156.391659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74714 -40.77791 -39.75701 -36.34211 -34.61435 -33.87135 -32.33614 -31.51688 -29.64382 -27.15534 -26.07104 -25.07167 -24.40202 -23.14614 -21.75258 -20.83406 -19.62585 -18.94872 -17.96646 -17.15470 -17.02486 -16.66954 -16.37116 -16.18730 -15.89381 -15.54997 -15.19173 -14.84199 -14.77900 -14.54879 -14.50150 -13.69892 -13.42700 -13.16890 -12.85324 -12.72961 -12.67539 -12.27112 -12.08549 -11.73205 -11.44219 -11.25639 -11.07182 -11.00522 -10.88966 -10.53182 -10.20802 -10.18935 -9.20519 -8.62410 -5.46881 -0.35382 0.10243 1.30166 1.42187 1.60532 1.78132 1.93803 2.50408 2.85354 3.02686 3.19873 3.35121 3.51354 3.55488 3.73343 3.83632 3.95526 4.06878 4.30868 4.35485 4.51769 4.53560 4.59680 4.66825 4.71364 4.76038 4.80040 4.81988 4.85183 5.01650 5.11068 5.18648 5.25639 5.32970 5.53518 5.61658 5.95237 6.42894 6.70091 6.89884 7.09825 7.33100 8.28193 8.89601 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.005080 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.554160 B = 5510.945350 C = 6053.400032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 H 0.043 0.957 4 N -0.697 5.697 5 C 0.549 3.451 6 O -0.578 6.578 7 C -0.102 4.102 8 C -0.130 4.130 9 C 0.097 3.903 10 N -0.490 5.490 11 C 0.095 3.905 12 C -0.133 4.133 13 C -0.107 4.107 14 C 0.126 3.874 15 N -0.664 5.664 16 C -0.284 4.284 17 H 0.048 0.952 18 C -0.089 4.089 19 N -0.976 5.976 20 Si 1.110 2.890 21 H -0.307 1.307 22 H -0.290 1.290 23 H -0.248 1.248 24 C 0.087 3.913 25 H 0.092 0.908 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.419 0.581 29 H 0.175 0.825 30 H 0.198 0.802 31 H 0.185 0.815 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.246 0.754 37 H 0.068 0.932 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 -20.523 15.561 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.062 0.938 4 N -0.349 5.349 5 C 0.337 3.663 6 O -0.458 6.458 7 C -0.113 4.113 8 C -0.150 4.150 9 C -0.060 4.060 10 N -0.200 5.200 11 C -0.060 4.060 12 C -0.154 4.154 13 C -0.126 4.126 14 C 0.001 3.999 15 N -0.394 5.394 16 C -0.412 4.412 17 H 0.066 0.934 18 C -0.280 4.280 19 N -0.622 5.622 20 Si 0.937 3.063 21 H -0.235 1.235 22 H -0.218 1.218 23 H -0.172 1.172 24 C -0.037 4.037 25 H 0.111 0.889 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.258 0.742 29 H 0.192 0.808 30 H 0.215 0.785 31 H 0.202 0.798 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.868 -19.910 16.754 26.473 hybrid contribution -1.755 1.405 -1.896 2.941 sum -6.623 -18.505 14.858 24.638 Atomic orbital electron populations 1.22024 0.93228 1.03700 1.01661 1.20472 0.95021 0.95589 0.82697 0.93842 1.45768 1.66041 1.14705 1.08388 1.18696 0.77396 0.86090 0.84163 1.90791 1.51749 1.17651 1.85616 1.20387 1.01519 0.95800 0.93599 1.22697 0.97316 0.92771 1.02216 1.23391 0.94030 1.01756 0.86811 1.67640 1.14027 1.09128 1.29165 1.23119 0.93943 0.90096 0.98887 1.22428 0.98071 1.02101 0.92758 1.23016 0.95224 1.01298 0.93056 1.22662 0.90863 0.91311 0.95093 1.46148 1.16406 1.12396 1.64431 1.20009 0.95332 0.90833 1.35007 0.93377 1.26960 0.98630 0.99711 1.02731 1.71003 1.37820 1.16872 1.36534 0.83251 0.73129 0.75151 0.74775 1.23550 1.21797 1.17247 1.23124 0.96379 0.90329 0.93884 0.88917 0.93974 0.91652 0.74242 0.80805 0.78529 0.79772 0.84487 0.84109 0.93134 0.91465 0.94546 0.91420 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.29 71.98 0.67 -3.05 16 2 C 0.17 5.00 2.43 44.99 0.11 5.11 16 3 H 0.04 1.88 7.36 -2.39 -0.02 1.86 16 4 N -0.70 -16.62 5.04 -445.10 -2.24 -18.86 16 5 C 0.55 16.21 7.76 86.88 0.67 16.88 16 6 O -0.58 -23.24 16.11 -3.76 -0.06 -23.30 16 7 C -0.10 -2.29 5.91 -19.88 -0.12 -2.41 16 8 C -0.13 -1.84 9.62 22.63 0.22 -1.62 16 9 C 0.10 1.30 11.17 84.67 0.95 2.25 16 10 N -0.49 -8.94 10.33 -196.00 -2.03 -10.97 16 11 C 0.10 1.72 11.17 84.67 0.95 2.66 16 12 C -0.13 -2.93 9.68 22.63 0.22 -2.71 16 13 C -0.11 -2.89 3.73 -10.37 -0.04 -2.92 16 14 C 0.13 4.28 8.08 83.17 0.67 4.96 16 15 N -0.66 -31.55 3.49 -738.03 -2.58 -34.13 16 16 C -0.28 -16.98 11.08 84.03 0.93 -16.05 16 17 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 18 C -0.09 -5.54 5.50 84.86 0.47 -5.08 16 19 N -0.98 -65.78 13.70 21.65 0.30 -65.48 16 20 Si 1.11 56.12 25.16 68.60 1.73 57.85 16 21 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 22 H -0.29 -14.28 6.51 99.48 0.65 -13.64 16 23 H -0.25 -10.76 6.20 99.48 0.62 -10.14 16 24 C 0.09 3.28 5.24 83.26 0.44 3.71 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.73 6.50 -2.39 -0.02 1.71 16 28 H 0.42 5.94 6.74 -92.71 -0.63 5.31 16 29 H 0.17 1.11 6.54 -2.91 -0.02 1.09 16 30 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.14 3.23 7.74 -2.91 -0.02 3.21 16 33 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.71 6.43 -2.39 -0.02 1.70 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.25 16.57 8.73 -92.71 -0.81 15.76 16 37 H 0.07 2.31 7.66 -2.39 -0.02 2.29 16 38 H 0.04 1.46 4.71 -2.39 -0.01 1.45 16 Total: -1.00 -85.94 313.47 1.52 -84.42 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.27 Total: 8.74 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.13 Total: 1.73 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -6.55 Total: -129.44 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.30 kcal Atomic # 14 Polarization: 56.12 SS G_CDS: 1.73 Total: 57.85 kcal Total: -85.94 1.52 -84.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969202746.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.836 kcal (2) G-P(sol) polarization free energy of solvation -85.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds