Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99781 * 2 1 4 4 H 1.08003 * 119.99966 * 203.44497 * 3 2 1 5 5 C 1.38805 * 120.00369 * 23.44056 * 3 2 1 6 6 N 1.31628 * 119.99680 * 14.52822 * 5 3 2 7 7 Si 1.86797 * 120.00645 * 194.52746 * 5 3 2 8 8 H 1.48498 * 109.47144 * 59.99985 * 7 5 3 9 9 H 1.48498 * 109.47421 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46946 * 300.00437 * 7 5 3 11 11 C 1.46499 * 120.00082 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64004 * 178.31180 * 11 2 1 13 13 C 1.55443 * 110.70967 * 55.00266 * 11 2 1 14 14 C 1.54910 * 101.44951 * 206.14588 * 13 11 2 15 15 N 1.47426 * 104.93229 * 37.00444 * 14 13 11 16 16 C 1.34774 * 125.64983 * 155.83378 * 15 14 13 17 17 O 1.21514 * 119.99776 * 179.97438 * 16 15 14 18 18 C 1.48170 * 119.99960 * 359.97438 * 16 15 14 19 19 C 1.39307 * 119.71767 * 179.72424 * 18 16 15 20 20 C 1.38598 * 119.05323 * 179.74940 * 19 18 16 21 21 C 1.38624 * 118.48951 * 0.51504 * 20 19 18 22 22 C 1.38559 * 119.34816 * 359.72467 * 21 20 19 23 23 N 1.31519 * 120.90663 * 0.02571 * 22 21 20 24 24 C 1.47023 * 108.70067 * 335.81776 * 15 14 13 25 25 H 1.08994 * 109.47186 * 275.18750 * 1 2 3 26 26 H 1.09000 * 109.47329 * 35.19316 * 1 2 3 27 27 H 1.09010 * 109.46843 * 155.18542 * 1 2 3 28 28 H 0.97001 * 119.99718 * 179.97438 * 6 5 3 29 29 H 1.08993 * 111.11994 * 88.09194 * 13 11 2 30 30 H 1.08999 * 111.01284 * 324.15107 * 13 11 2 31 31 H 1.08998 * 110.36669 * 278.10968 * 14 13 11 32 32 H 1.09001 * 110.36868 * 155.89681 * 14 13 11 33 33 H 1.08001 * 120.47413 * 359.97438 * 19 18 16 34 34 H 1.08003 * 120.74933 * 180.23861 * 20 19 18 35 35 H 1.08000 * 120.32255 * 179.75461 * 21 20 19 36 36 H 1.08010 * 119.54236 * 180.02562 * 22 21 20 37 37 H 1.08996 * 109.88517 * 120.47537 * 24 15 14 38 38 H 1.08997 * 109.88215 * 241.64520 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5416 2.3384 0.4782 6 7 0.4355 2.2535 1.1868 7 14 2.2927 4.0100 0.1162 8 1 2.3515 4.2186 -1.3529 9 1 1.4587 5.0718 0.7344 10 1 3.6653 4.0683 0.6798 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 -0.0305 13 6 1.7502 -2.1612 -1.1920 14 6 2.0639 -3.5780 -0.6498 15 7 1.7324 -3.5174 0.7855 16 6 1.4053 -4.5698 1.5612 17 8 1.1504 -4.4016 2.7374 18 6 1.3566 -5.9318 0.9800 19 6 1.0235 -7.0162 1.7885 20 6 0.9769 -8.2835 1.2293 21 6 1.2759 -8.4236 -0.1171 22 6 1.6043 -7.3011 -0.8601 23 7 1.6360 -6.1092 -0.3052 24 6 1.8182 -2.1187 1.2304 25 1 -0.3633 0.0929 1.0234 26 1 -0.3634 0.8398 -0.5923 27 1 -0.3633 -0.9329 -0.4313 28 1 0.0108 3.0588 1.5212 29 1 2.3363 -1.9462 -2.0855 30 1 0.6843 -2.0453 -1.3886 31 1 3.1200 -3.8109 -0.7857 32 1 1.4445 -4.3218 -1.1510 33 1 0.8010 -6.8710 2.8353 34 1 0.7180 -9.1430 1.8299 35 1 1.2526 -9.3980 -0.5823 36 1 1.8374 -7.4066 -1.9095 37 1 0.8541 -1.7944 1.6220 38 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970957428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = 45.703223 kcal Electronic energy + Delta-G solvation = -21071.552678 eV Core-core repulsion = 17915.520407 eV Total energy + Delta-G solvation = -3156.032272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69273 -39.05589 -37.29640 -34.77012 -32.89928 -31.75379 -31.26815 -29.61779 -27.86903 -26.01050 -25.01529 -23.69658 -22.92977 -22.16210 -19.93639 -19.11152 -17.31620 -17.05925 -16.84001 -16.06002 -15.75727 -15.28802 -14.85201 -14.69471 -14.20211 -13.60628 -13.50904 -13.24551 -13.19714 -12.59482 -12.52554 -12.13645 -11.99055 -11.72809 -11.41460 -10.87447 -10.75348 -10.54803 -10.43239 -10.28055 -10.19122 -10.14445 -9.81147 -9.72620 -9.39858 -9.33126 -8.53971 -8.19623 -6.76681 -5.73080 -3.21038 0.52019 0.99587 2.83664 3.18312 3.39899 3.45290 3.46279 3.79507 4.03961 4.49129 4.55535 4.60197 4.75585 4.85661 5.12778 5.21466 5.33527 5.48008 5.50602 5.63259 5.78123 5.78647 5.86858 5.98118 6.03128 6.21011 6.38164 6.43757 6.49843 6.66135 6.74067 6.87292 6.94452 7.34936 7.55399 7.74052 7.80252 7.85345 8.35388 8.39922 9.21411 9.84335 10.34091 11.30994 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043725 B = 0.003835 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.210557 B = 7299.592359 C = 7624.966231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.172 3.828 12 H 0.078 0.922 13 C -0.157 4.157 14 C 0.105 3.895 15 N -0.589 5.589 16 C 0.572 3.428 17 O -0.542 6.542 18 C 0.091 3.909 19 C -0.115 4.115 20 C -0.082 4.082 21 C -0.157 4.157 22 C 0.093 3.907 23 N -0.452 5.452 24 C 0.085 3.915 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.004 0.996 28 H 0.254 0.746 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.075 0.925 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -20.900 -4.947 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.197 4.197 14 C -0.018 4.018 15 N -0.320 5.320 16 C 0.358 3.642 17 O -0.420 6.420 18 C -0.047 4.047 19 C -0.136 4.136 20 C -0.108 4.108 21 C -0.177 4.177 22 C -0.066 4.066 23 N -0.163 5.163 24 C -0.039 4.039 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.093 0.907 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.625 -19.893 -4.676 20.500 hybrid contribution 0.104 0.108 0.408 0.434 sum 1.729 -19.785 -4.269 20.314 Atomic orbital electron populations 1.20799 0.82567 0.95626 0.99610 1.43911 1.01835 0.99929 1.84838 1.19178 0.98929 0.85309 1.35812 0.91251 1.25060 0.98043 0.98651 0.97627 1.70075 1.20586 1.27551 1.36450 0.86310 0.78410 0.83676 0.77967 1.21017 1.21656 1.20870 1.21441 0.96365 0.85855 0.90164 0.90353 1.23459 1.02540 0.93975 0.99742 1.22623 1.00684 0.98438 0.80011 1.48394 1.64786 1.07420 1.11388 1.17550 0.78462 0.82862 0.85323 1.90781 1.50863 1.84796 1.15537 1.21292 0.98672 0.94582 0.90133 1.22153 0.97325 0.92100 1.02019 1.21623 0.96604 0.97357 0.95256 1.22354 0.99661 1.00664 0.95063 1.22917 0.95619 0.87441 1.00592 1.67918 1.11899 1.25403 1.11130 1.23011 1.02469 0.78492 0.99968 0.94942 0.94056 0.97794 0.93586 0.90525 0.90693 0.91975 0.88442 0.83450 0.84209 0.84432 0.82087 0.90707 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.75 59.85 0.46 4.38 16 2 N -0.58 -14.56 2.93 -171.21 -0.50 -15.06 16 3 C -0.26 -7.16 9.59 -15.06 -0.14 -7.30 16 4 H 0.07 1.83 7.85 -52.48 -0.41 1.41 16 5 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 6 N -0.90 -26.43 10.82 55.49 0.60 -25.83 16 7 Si 0.91 21.77 29.58 -169.99 -5.03 16.74 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.17 3.53 3.45 -65.94 -0.23 3.30 16 12 H 0.08 1.58 7.93 -51.93 -0.41 1.17 16 13 C -0.16 -2.64 6.61 -24.43 -0.16 -2.81 16 14 C 0.11 1.60 5.94 -2.53 -0.02 1.58 16 15 N -0.59 -10.59 3.33 -171.51 -0.57 -11.17 16 16 C 0.57 10.34 7.84 -12.18 -0.10 10.24 16 17 O -0.54 -11.35 16.65 5.35 0.09 -11.26 16 18 C 0.09 1.31 6.72 -83.01 -0.56 0.75 16 19 C -0.12 -1.35 9.63 -39.05 -0.38 -1.72 16 20 C -0.08 -0.68 10.17 -39.31 -0.40 -1.08 16 21 C -0.16 -1.15 10.11 -39.32 -0.40 -1.55 16 22 C 0.09 0.83 11.18 -17.57 -0.20 0.64 16 23 N -0.45 -5.68 6.60 -9.80 -0.06 -5.74 16 24 C 0.08 1.74 6.51 -3.06 -0.02 1.72 16 25 H 0.03 0.88 7.25 -51.93 -0.38 0.51 16 26 H 0.04 1.08 7.41 -51.93 -0.39 0.70 16 27 H 0.00 0.08 6.13 -51.92 -0.32 -0.24 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.34 6.15 -51.93 -0.32 1.02 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 1.39 5.88 -51.93 -0.31 1.08 16 33 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 34 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.07 1.73 7.06 -51.93 -0.37 1.37 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -32.45 312.00 -7.96 -40.40 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.97 Total: -1.01 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -2.22 Total: 8.22 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.54 Total: -57.80 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.45 -7.96 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970957428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.108 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds