Wall clock time and date at job start Mon Mar 30 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99781 * 2 1 4 4 H 1.08003 * 119.99966 * 203.44497 * 3 2 1 5 5 C 1.38805 * 120.00369 * 23.44056 * 3 2 1 6 6 N 1.31628 * 119.99680 * 14.52822 * 5 3 2 7 7 Si 1.86797 * 120.00645 * 194.52746 * 5 3 2 8 8 H 1.48498 * 109.47144 * 59.99985 * 7 5 3 9 9 H 1.48498 * 109.47421 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46946 * 300.00437 * 7 5 3 11 11 C 1.46499 * 120.00082 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64004 * 178.31180 * 11 2 1 13 13 C 1.55443 * 110.70967 * 55.00266 * 11 2 1 14 14 C 1.54910 * 101.44951 * 206.14588 * 13 11 2 15 15 N 1.47426 * 104.93229 * 37.00444 * 14 13 11 16 16 C 1.34774 * 125.64983 * 155.83378 * 15 14 13 17 17 O 1.21514 * 119.99776 * 179.97438 * 16 15 14 18 18 C 1.48170 * 119.99960 * 359.97438 * 16 15 14 19 19 C 1.39307 * 119.71767 * 179.72424 * 18 16 15 20 20 C 1.38598 * 119.05323 * 179.74940 * 19 18 16 21 21 C 1.38624 * 118.48951 * 0.51504 * 20 19 18 22 22 C 1.38559 * 119.34816 * 359.72467 * 21 20 19 23 23 N 1.31519 * 120.90663 * 0.02571 * 22 21 20 24 24 C 1.47023 * 108.70067 * 335.81776 * 15 14 13 25 25 H 1.08994 * 109.47186 * 275.18750 * 1 2 3 26 26 H 1.09000 * 109.47329 * 35.19316 * 1 2 3 27 27 H 1.09010 * 109.46843 * 155.18542 * 1 2 3 28 28 H 0.97001 * 119.99718 * 179.97438 * 6 5 3 29 29 H 1.08993 * 111.11994 * 88.09194 * 13 11 2 30 30 H 1.08999 * 111.01284 * 324.15107 * 13 11 2 31 31 H 1.08998 * 110.36669 * 278.10968 * 14 13 11 32 32 H 1.09001 * 110.36868 * 155.89681 * 14 13 11 33 33 H 1.08001 * 120.47413 * 359.97438 * 19 18 16 34 34 H 1.08003 * 120.74933 * 180.23861 * 20 19 18 35 35 H 1.08000 * 120.32255 * 179.75461 * 21 20 19 36 36 H 1.08010 * 119.54236 * 180.02562 * 22 21 20 37 37 H 1.08996 * 109.88517 * 120.47537 * 24 15 14 38 38 H 1.08997 * 109.88215 * 241.64520 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1628 1.2246 -0.3721 5 6 1.5416 2.3384 0.4782 6 7 0.4355 2.2535 1.1868 7 14 2.2927 4.0100 0.1162 8 1 2.3515 4.2186 -1.3529 9 1 1.4587 5.0718 0.7344 10 1 3.6653 4.0683 0.6798 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 -0.0305 13 6 1.7502 -2.1612 -1.1920 14 6 2.0639 -3.5780 -0.6498 15 7 1.7324 -3.5174 0.7855 16 6 1.4053 -4.5698 1.5612 17 8 1.1504 -4.4016 2.7374 18 6 1.3566 -5.9318 0.9800 19 6 1.0235 -7.0162 1.7885 20 6 0.9769 -8.2835 1.2293 21 6 1.2759 -8.4236 -0.1171 22 6 1.6043 -7.3011 -0.8601 23 7 1.6360 -6.1092 -0.3052 24 6 1.8182 -2.1187 1.2304 25 1 -0.3633 0.0929 1.0234 26 1 -0.3634 0.8398 -0.5923 27 1 -0.3633 -0.9329 -0.4313 28 1 0.0108 3.0588 1.5212 29 1 2.3363 -1.9462 -2.0855 30 1 0.6843 -2.0453 -1.3886 31 1 3.1200 -3.8109 -0.7857 32 1 1.4445 -4.3218 -1.1510 33 1 0.8010 -6.8710 2.8353 34 1 0.7180 -9.1430 1.8299 35 1 1.2526 -9.3980 -0.5823 36 1 1.8374 -7.4066 -1.9095 37 1 0.8541 -1.7944 1.6220 38 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970957428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:47 Heat of formation + Delta-G solvation = 24.684055 kcal Electronic energy + Delta-G solvation = -21072.464138 eV Core-core repulsion = 17915.520407 eV Total energy + Delta-G solvation = -3156.943731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73082 -40.28353 -38.85381 -36.58303 -33.89206 -33.21927 -32.39018 -31.18959 -29.45324 -28.07651 -26.26973 -24.70445 -24.24641 -23.58991 -21.19948 -20.76580 -18.95918 -18.53221 -17.89167 -17.35482 -16.84121 -16.62302 -16.48054 -15.88027 -15.47903 -15.04541 -14.96628 -14.65469 -14.42064 -14.08624 -13.99762 -13.72659 -13.32571 -13.11231 -12.82393 -12.72044 -12.49467 -12.41837 -12.23923 -12.12867 -11.81966 -11.52901 -11.33443 -10.91641 -10.64263 -10.31649 -10.21828 -9.64428 -8.81964 -7.83986 -5.35233 -0.34648 0.29461 1.48112 1.50552 1.57415 1.68160 1.86019 2.51229 2.88532 3.06195 3.28102 3.57082 3.70011 3.88022 3.98890 4.04893 4.08173 4.12117 4.28022 4.38234 4.45221 4.51951 4.73045 4.78546 4.81787 4.99498 5.05888 5.09299 5.16772 5.19256 5.25147 5.33555 5.41827 5.63664 5.66209 5.71034 6.30256 6.45025 6.72133 7.03622 7.11563 7.81851 8.28015 9.18758 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043725 B = 0.003835 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.210557 B = 7299.592359 C = 7624.966231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.600 5.600 3 C -0.271 4.271 4 H 0.079 0.921 5 C -0.052 4.052 6 N -0.939 5.939 7 Si 0.974 3.026 8 H -0.274 1.274 9 H -0.298 1.298 10 H -0.274 1.274 11 C 0.166 3.834 12 H 0.084 0.916 13 C -0.142 4.142 14 C 0.117 3.883 15 N -0.594 5.594 16 C 0.564 3.436 17 O -0.587 6.587 18 C 0.058 3.942 19 C -0.125 4.125 20 C -0.077 4.077 21 C -0.133 4.133 22 C 0.089 3.911 23 N -0.471 5.471 24 C 0.096 3.904 25 H -0.003 1.003 26 H 0.019 0.981 27 H 0.030 0.970 28 H 0.248 0.752 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.038 0.962 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -24.030 -7.522 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.321 5.321 3 C -0.401 4.401 4 H 0.097 0.903 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.802 3.198 8 H -0.200 1.200 9 H -0.224 1.224 10 H -0.200 1.200 11 C 0.058 3.942 12 H 0.102 0.898 13 C -0.182 4.182 14 C -0.005 4.005 15 N -0.324 5.324 16 C 0.353 3.647 17 O -0.468 6.468 18 C -0.078 4.078 19 C -0.147 4.147 20 C -0.103 4.103 21 C -0.152 4.152 22 C -0.070 4.070 23 N -0.183 5.183 24 C -0.030 4.030 25 H 0.016 0.984 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.154 0.846 34 H 0.192 0.808 35 H 0.201 0.799 36 H 0.214 0.786 37 H 0.057 0.943 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.811 -23.063 -7.282 24.348 hybrid contribution -0.236 0.854 1.176 1.472 sum 2.575 -22.209 -6.107 23.177 Atomic orbital electron populations 1.20459 0.83043 0.95907 0.97244 1.44098 1.01863 1.01028 1.85077 1.19606 0.99321 0.86323 1.34826 0.90327 1.25895 0.98738 1.02273 0.97871 1.70266 1.22249 1.27923 1.38053 0.85242 0.77585 0.78994 0.77998 1.19993 1.22392 1.20001 1.21628 0.96286 0.84684 0.91640 0.89815 1.23344 1.02166 0.93770 0.98869 1.22726 1.02083 0.97588 0.78105 1.48463 1.65144 1.06196 1.12641 1.18319 0.77042 0.84426 0.84898 1.90732 1.52694 1.85837 1.17537 1.20711 1.02868 0.92599 0.91663 1.22219 0.97713 0.93197 1.01539 1.22041 0.95339 0.96609 0.96282 1.22882 0.96009 1.02079 0.94239 1.23611 0.94546 0.86666 1.02222 1.67731 1.12685 1.27745 1.10126 1.22597 0.99919 0.80774 0.99667 0.98445 0.96243 0.95128 0.94260 0.88068 0.91690 0.90169 0.86726 0.84621 0.80764 0.79948 0.78576 0.94332 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 7.75 127.77 0.99 10.19 16 2 N -0.60 -30.53 2.93 -695.58 -2.04 -32.57 16 3 C -0.27 -14.93 9.59 84.03 0.81 -14.12 16 4 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 5 C -0.05 -2.97 5.07 84.86 0.43 -2.54 16 6 N -0.94 -57.16 10.82 21.65 0.23 -56.93 16 7 Si 0.97 45.38 29.58 68.60 2.03 47.41 16 8 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 9 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 C 0.17 6.87 3.45 46.28 0.16 7.03 16 12 H 0.08 3.35 7.93 -2.39 -0.02 3.33 16 13 C -0.14 -4.57 6.61 32.09 0.21 -4.35 16 14 C 0.12 3.35 5.94 86.86 0.52 3.87 16 15 N -0.59 -21.80 3.33 -814.82 -2.71 -24.51 16 16 C 0.56 21.16 7.84 86.88 0.68 21.85 16 17 O -0.59 -26.25 16.65 -3.76 -0.06 -26.32 16 18 C 0.06 1.63 6.72 41.91 0.28 1.91 16 19 C -0.13 -2.82 9.63 22.61 0.22 -2.60 16 20 C -0.08 -0.98 10.17 22.45 0.23 -0.75 16 21 C -0.13 -1.22 10.11 22.44 0.23 -0.99 16 22 C 0.09 1.19 11.18 84.82 0.95 2.14 16 23 N -0.47 -10.67 6.60 -184.91 -1.22 -11.89 16 24 C 0.10 4.13 6.51 86.73 0.56 4.69 16 25 H 0.00 -0.16 7.25 -2.39 -0.02 -0.18 16 26 H 0.02 1.05 7.41 -2.39 -0.02 1.03 16 27 H 0.03 1.37 6.13 -2.38 -0.01 1.36 16 28 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.06 2.24 6.15 -2.39 -0.01 2.22 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 2.99 5.88 -2.39 -0.01 2.97 16 33 H 0.14 3.24 7.64 -2.91 -0.02 3.22 16 34 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 35 H 0.18 0.13 8.06 -2.91 -0.02 0.10 16 36 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 37 H 0.04 1.92 7.06 -2.39 -0.02 1.90 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -75.58 312.00 3.56 -72.02 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.06 Total: 6.47 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 6.26 Total: 26.31 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.73 Total: -125.89 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.58 3.56 -72.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970957428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.704 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds