Wall clock time and date at job start Mon Mar 30 2020 01:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99845 * 2 1 4 4 C 1.54327 * 109.88212 * 238.89950 * 2 1 3 5 5 H 1.09002 * 110.71517 * 144.23445 * 4 2 1 6 6 N 1.46496 * 110.71777 * 21.13953 * 4 2 1 7 7 C 1.36945 * 119.99718 * 157.44137 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55150 * 103.10110 * 262.68605 * 4 2 1 16 16 C 1.54914 * 101.58287 * 324.58850 * 15 4 2 17 17 N 1.47317 * 109.85122 * 121.29612 * 2 1 3 18 18 C 1.34780 * 125.61368 * 300.48931 * 17 2 1 19 19 O 1.21514 * 120.00053 * 0.16847 * 18 17 2 20 20 C 1.48170 * 120.00182 * 180.16194 * 18 17 2 21 21 C 1.39305 * 119.72539 * 179.72587 * 20 18 17 22 22 C 1.38591 * 119.05902 * 179.77314 * 21 20 18 23 23 C 1.38629 * 118.48806 * 0.49785 * 22 21 20 24 24 C 1.38563 * 119.35052 * 359.74808 * 23 22 21 25 25 N 1.31523 * 120.90264 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47683 * 181.10140 * 1 2 3 27 27 H 1.09004 * 109.47517 * 301.10314 * 1 2 3 28 28 H 1.09003 * 109.47545 * 61.09860 * 1 2 3 29 29 H 0.96996 * 120.00499 * 337.43867 * 6 4 2 30 30 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 31 31 H 1.09000 * 111.00827 * 82.66368 * 15 4 2 32 32 H 1.08997 * 111.00493 * 206.47452 * 15 4 2 33 33 H 1.08998 * 110.36748 * 155.85045 * 16 15 4 34 34 H 1.09005 * 110.36345 * 278.16933 * 16 15 4 35 35 H 1.08000 * 120.47280 * 0.02562 * 21 20 18 36 36 H 1.07996 * 120.76010 * 180.24410 * 22 21 20 37 37 H 1.08001 * 120.32508 * 179.77135 * 23 22 21 38 38 H 1.07998 * 119.54571 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6200 6 7 1.0292 -0.8028 -2.2874 7 6 1.3924 -0.9892 -3.5946 8 1 2.4349 -1.0966 -3.8552 9 6 0.4207 -1.0400 -4.5844 10 7 -0.8499 -0.9086 -4.2668 11 14 0.9162 -1.2936 -6.3676 12 1 -0.2987 -1.3110 -7.2213 13 1 1.8071 -0.1856 -6.7961 14 1 1.6340 -2.5865 -6.5028 15 6 2.3553 -2.1701 -0.6956 16 6 2.8596 -1.8524 0.7343 17 7 2.0302 -0.7198 1.1840 18 6 1.7738 -0.3945 2.4666 19 8 1.0728 0.5647 2.7217 20 6 2.3466 -1.2066 3.5656 21 6 2.0826 -0.8618 4.8892 22 6 2.6215 -1.6338 5.9063 23 6 3.4147 -2.7180 5.5641 24 6 3.6397 -2.9995 4.2261 25 7 3.1112 -2.2533 3.2807 26 1 -0.3634 -1.0274 0.0198 27 1 -0.3634 0.5309 0.8799 28 1 -0.3634 0.4967 -0.8997 29 1 0.0929 -0.7059 -2.0533 30 1 -1.5289 -0.9438 -4.9586 31 1 1.4501 -2.7766 -0.6649 32 1 3.1310 -2.6595 -1.2845 33 1 2.7138 -2.7125 1.3877 34 1 3.9113 -1.5668 0.7108 35 1 1.4633 -0.0075 5.1196 36 1 2.4313 -1.3937 6.9419 37 1 3.8527 -3.3374 6.3328 38 1 4.2575 -3.8431 3.9559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985890052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:58 Heat of formation + Delta-G solvation = 35.227811 kcal Electronic energy + Delta-G solvation = -21137.433235 eV Core-core repulsion = 17980.946715 eV Total energy + Delta-G solvation = -3156.486519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76254 -39.29601 -37.35763 -34.20679 -32.90073 -31.83434 -31.18433 -30.57338 -28.79556 -25.12762 -24.93494 -23.76198 -23.21958 -22.25042 -20.19190 -18.80279 -17.59425 -17.18853 -16.91480 -16.07398 -15.63753 -15.35140 -14.79573 -14.68501 -14.20218 -13.81185 -13.52024 -13.39937 -13.25892 -12.80443 -12.44614 -12.19036 -11.95179 -11.66448 -11.42859 -11.16470 -10.93587 -10.78038 -10.39609 -10.28814 -10.20484 -10.09333 -9.83772 -9.59770 -9.42113 -9.36627 -8.87577 -8.29445 -6.97852 -5.78189 -3.07667 0.49508 0.97714 2.79543 3.10415 3.44109 3.48655 3.49620 3.76548 4.01304 4.54061 4.56072 4.58652 4.73746 4.83337 5.10415 5.24748 5.31098 5.48238 5.52949 5.65963 5.72031 5.74630 5.84383 5.84907 5.98096 6.18048 6.23210 6.29795 6.37076 6.50112 6.62342 6.69206 6.79544 6.87953 7.05630 7.53660 7.69212 7.80374 8.31798 8.40681 9.51910 10.07612 10.42822 11.44350 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039732 B = 0.003931 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.557855 B = 7120.640587 C = 7603.610419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 H 0.073 0.927 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.718 5.718 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.011 4.011 10 N -0.932 5.932 11 Si 0.909 3.091 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.157 4.157 16 C 0.102 3.898 17 N -0.586 5.586 18 C 0.576 3.424 19 O -0.540 6.540 20 C 0.090 3.910 21 C -0.115 4.115 22 C -0.083 4.083 23 C -0.157 4.157 24 C 0.094 3.906 25 N -0.451 5.451 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.391 0.609 30 H 0.257 0.743 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -4.037 19.846 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.091 0.909 4 C 0.061 3.939 5 H 0.082 0.918 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.580 5.580 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.199 4.199 16 C -0.021 4.021 17 N -0.317 5.317 18 C 0.363 3.637 19 O -0.418 6.418 20 C -0.048 4.048 21 C -0.136 4.136 22 C -0.109 4.109 23 C -0.177 4.177 24 C -0.065 4.065 25 N -0.162 5.162 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.229 0.771 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.003 -3.683 18.939 21.291 hybrid contribution -0.117 -0.105 0.013 0.158 sum 8.886 -3.787 18.952 21.272 Atomic orbital electron populations 1.22002 0.94432 1.02453 1.02762 1.21984 0.95500 0.95755 0.84479 0.90880 1.21194 0.93118 0.92345 0.87247 0.91836 1.42667 1.04765 1.86387 1.02278 1.19213 0.92725 1.41979 0.83535 0.91108 1.24747 0.95255 1.02654 0.98073 1.69653 0.99049 1.56795 1.32515 0.86247 0.76983 0.77974 0.84831 1.21726 1.21235 1.21249 1.23602 1.01581 1.00866 0.93812 1.22674 0.93682 0.89440 0.96257 1.48505 1.48604 1.30233 1.04374 1.17501 0.80981 0.83918 0.81316 1.90760 1.39081 1.28753 1.83184 1.21277 0.96505 0.93829 0.93227 1.22140 0.98944 1.00392 0.92091 1.21622 0.95233 0.94038 0.99984 1.22364 0.98939 0.98150 0.98211 1.22926 0.96788 0.98059 0.88772 1.67934 1.07171 1.04048 1.37090 0.92529 0.92151 0.90040 0.77138 0.93363 0.90949 0.90732 0.88445 0.92019 0.83455 0.84205 0.84415 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 7.94 37.15 0.29 -2.81 16 2 C 0.13 2.36 3.50 -66.79 -0.23 2.13 16 3 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 4 C 0.17 3.46 3.46 -66.10 -0.23 3.23 16 5 H 0.06 1.27 8.11 -51.93 -0.42 0.84 16 6 N -0.72 -17.75 4.98 -51.66 -0.26 -18.01 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 11 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 C -0.16 -2.76 6.77 -24.58 -0.17 -2.93 16 16 C 0.10 1.55 5.94 -2.53 -0.02 1.54 16 17 N -0.59 -9.99 3.09 -163.78 -0.51 -10.49 16 18 C 0.58 9.82 7.62 -12.18 -0.09 9.73 16 19 O -0.54 -10.41 15.23 5.35 0.08 -10.33 16 20 C 0.09 1.24 6.72 -83.01 -0.56 0.69 16 21 C -0.11 -1.29 9.63 -39.05 -0.38 -1.67 16 22 C -0.08 -0.66 10.17 -39.31 -0.40 -1.06 16 23 C -0.16 -1.12 10.11 -39.32 -0.40 -1.52 16 24 C 0.09 0.83 11.18 -17.56 -0.20 0.63 16 25 N -0.45 -5.59 6.60 -9.80 -0.06 -5.65 16 26 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 27 H 0.06 1.17 6.77 -51.93 -0.35 0.82 16 28 H 0.08 1.72 6.72 -51.93 -0.35 1.37 16 29 H 0.39 10.19 4.99 -40.82 -0.20 9.99 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.41 5.88 -51.93 -0.31 1.10 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.15 1.61 7.64 -52.49 -0.40 1.21 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -32.09 313.38 -7.89 -39.98 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.96 Total: 9.04 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.62 Total: 0.77 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.10 Total: -61.32 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.09 -7.89 -39.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985890052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.212 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds