Wall clock time and date at job start Mon Mar 30 2020 01:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99845 * 2 1 4 4 C 1.54327 * 109.88212 * 238.89950 * 2 1 3 5 5 H 1.09002 * 110.71517 * 144.23445 * 4 2 1 6 6 N 1.46496 * 110.71777 * 21.13953 * 4 2 1 7 7 C 1.36945 * 119.99718 * 157.44137 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55150 * 103.10110 * 262.68605 * 4 2 1 16 16 C 1.54914 * 101.58287 * 324.58850 * 15 4 2 17 17 N 1.47317 * 109.85122 * 121.29612 * 2 1 3 18 18 C 1.34780 * 125.61368 * 300.48931 * 17 2 1 19 19 O 1.21514 * 120.00053 * 0.16847 * 18 17 2 20 20 C 1.48170 * 120.00182 * 180.16194 * 18 17 2 21 21 C 1.39305 * 119.72539 * 179.72587 * 20 18 17 22 22 C 1.38591 * 119.05902 * 179.77314 * 21 20 18 23 23 C 1.38629 * 118.48806 * 0.49785 * 22 21 20 24 24 C 1.38563 * 119.35052 * 359.74808 * 23 22 21 25 25 N 1.31523 * 120.90264 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47683 * 181.10140 * 1 2 3 27 27 H 1.09004 * 109.47517 * 301.10314 * 1 2 3 28 28 H 1.09003 * 109.47545 * 61.09860 * 1 2 3 29 29 H 0.96996 * 120.00499 * 337.43867 * 6 4 2 30 30 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 31 31 H 1.09000 * 111.00827 * 82.66368 * 15 4 2 32 32 H 1.08997 * 111.00493 * 206.47452 * 15 4 2 33 33 H 1.08998 * 110.36748 * 155.85045 * 16 15 4 34 34 H 1.09005 * 110.36345 * 278.16933 * 16 15 4 35 35 H 1.08000 * 120.47280 * 0.02562 * 21 20 18 36 36 H 1.07996 * 120.76010 * 180.24410 * 22 21 20 37 37 H 1.08001 * 120.32508 * 179.77135 * 23 22 21 38 38 H 1.07998 * 119.54571 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 2.9639 -0.2814 -1.6200 6 7 1.0292 -0.8028 -2.2874 7 6 1.3924 -0.9892 -3.5946 8 1 2.4349 -1.0966 -3.8552 9 6 0.4207 -1.0400 -4.5844 10 7 -0.8499 -0.9086 -4.2668 11 14 0.9162 -1.2936 -6.3676 12 1 -0.2987 -1.3110 -7.2213 13 1 1.8071 -0.1856 -6.7961 14 1 1.6340 -2.5865 -6.5028 15 6 2.3553 -2.1701 -0.6956 16 6 2.8596 -1.8524 0.7343 17 7 2.0302 -0.7198 1.1840 18 6 1.7738 -0.3945 2.4666 19 8 1.0728 0.5647 2.7217 20 6 2.3466 -1.2066 3.5656 21 6 2.0826 -0.8618 4.8892 22 6 2.6215 -1.6338 5.9063 23 6 3.4147 -2.7180 5.5641 24 6 3.6397 -2.9995 4.2261 25 7 3.1112 -2.2533 3.2807 26 1 -0.3634 -1.0274 0.0198 27 1 -0.3634 0.5309 0.8799 28 1 -0.3634 0.4967 -0.8997 29 1 0.0929 -0.7059 -2.0533 30 1 -1.5289 -0.9438 -4.9586 31 1 1.4501 -2.7766 -0.6649 32 1 3.1310 -2.6595 -1.2845 33 1 2.7138 -2.7125 1.3877 34 1 3.9113 -1.5668 0.7108 35 1 1.4633 -0.0075 5.1196 36 1 2.4313 -1.3937 6.9419 37 1 3.8527 -3.3374 6.3328 38 1 4.2575 -3.8431 3.9559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985890052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:57 Heat of formation + Delta-G solvation = 14.555770 kcal Electronic energy + Delta-G solvation = -21138.329642 eV Core-core repulsion = 17980.946715 eV Total energy + Delta-G solvation = -3157.382926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79714 -40.44506 -38.79275 -35.96574 -33.94545 -33.13617 -32.40458 -32.01541 -30.48638 -26.79266 -26.10452 -25.14629 -24.33096 -23.51286 -21.46518 -20.27533 -19.45005 -18.53442 -17.79270 -17.05685 -16.83279 -16.60524 -16.37138 -16.02974 -15.51089 -15.37597 -14.74390 -14.70290 -14.35229 -14.11362 -13.90328 -13.64724 -13.21854 -13.04632 -12.94471 -12.84973 -12.77654 -12.48486 -12.11564 -12.05811 -11.65339 -11.57446 -11.21465 -10.93470 -10.89450 -10.30247 -10.20155 -9.64560 -9.00382 -7.92649 -5.22163 -0.33179 0.29834 1.49938 1.53038 1.58880 1.70696 1.84503 2.58616 2.89558 3.06732 3.39220 3.64522 3.78390 3.87333 3.94806 4.00625 4.08849 4.12862 4.20465 4.38345 4.41481 4.48715 4.58271 4.65565 4.80704 4.86610 4.95601 5.07587 5.12184 5.19047 5.19399 5.26897 5.35186 5.48388 5.55065 5.71432 6.28517 6.47170 6.73291 7.07020 7.35755 8.08427 8.33337 9.30908 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039732 B = 0.003931 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.557855 B = 7120.640587 C = 7603.610419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.131 3.869 3 H 0.069 0.931 4 C 0.167 3.833 5 H 0.069 0.931 6 N -0.731 5.731 7 C -0.242 4.242 8 H 0.081 0.919 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.975 3.025 12 H -0.299 1.299 13 H -0.278 1.278 14 H -0.276 1.276 15 C -0.147 4.147 16 C 0.117 3.883 17 N -0.590 5.590 18 C 0.570 3.430 19 O -0.575 6.575 20 C 0.056 3.944 21 C -0.124 4.124 22 C -0.078 4.078 23 C -0.134 4.134 24 C 0.087 3.913 25 N -0.473 5.473 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.380 0.620 30 H 0.251 0.749 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.775 -5.796 21.921 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.087 0.913 4 C 0.057 3.943 5 H 0.086 0.914 6 N -0.374 5.374 7 C -0.374 4.374 8 H 0.099 0.901 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.804 3.196 12 H -0.226 1.226 13 H -0.204 1.204 14 H -0.202 1.202 15 C -0.188 4.188 16 C -0.005 4.005 17 N -0.322 5.322 18 C 0.359 3.641 19 O -0.455 6.455 20 C -0.081 4.081 21 C -0.145 4.145 22 C -0.103 4.103 23 C -0.154 4.154 24 C -0.073 4.073 25 N -0.185 5.185 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.216 0.784 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.192 0.808 37 H 0.199 0.801 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 11.625 -5.452 21.045 24.653 hybrid contribution -0.827 0.395 -0.437 1.016 sum 10.798 -5.057 20.609 23.809 Atomic orbital electron populations 1.21809 0.95409 1.01346 1.01535 1.21750 0.94601 0.95775 0.85193 0.91279 1.21370 0.92085 0.94198 0.86683 0.91352 1.42830 1.05246 1.86631 1.02700 1.19642 0.93123 1.39980 0.84607 0.90087 1.25570 0.95289 1.03653 1.02192 1.69826 1.00065 1.58970 1.33334 0.85184 0.76303 0.78278 0.79802 1.22563 1.20412 1.20184 1.23430 1.01232 0.98608 0.95501 1.22676 0.93993 0.89340 0.94528 1.48540 1.49002 1.30535 1.04078 1.18157 0.80315 0.83817 0.81798 1.90720 1.40645 1.30398 1.83752 1.20816 0.99240 0.95339 0.92678 1.22225 0.99342 1.00904 0.92011 1.22043 0.94192 0.93381 1.00727 1.22864 0.96760 0.97253 0.98474 1.23566 0.96361 0.98106 0.89224 1.67754 1.07665 1.04166 1.38878 0.93549 0.92337 0.92015 0.78359 0.94064 0.92862 0.89398 0.87104 0.90306 0.84270 0.80771 0.80136 0.78945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 7.94 71.98 0.57 -5.33 16 2 C 0.13 5.05 3.50 45.28 0.16 5.21 16 3 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 4 C 0.17 6.73 3.46 46.18 0.16 6.89 16 5 H 0.07 2.70 8.11 -2.39 -0.02 2.68 16 6 N -0.73 -37.04 4.98 -317.34 -1.58 -38.62 16 7 C -0.24 -13.27 9.97 84.03 0.84 -12.44 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 10 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 11 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 12 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 15 C -0.15 -5.07 6.77 31.99 0.22 -4.85 16 16 C 0.12 3.41 5.94 86.86 0.52 3.92 16 17 N -0.59 -20.28 3.09 -790.38 -2.44 -22.72 16 18 C 0.57 19.78 7.62 86.88 0.66 20.45 16 19 O -0.57 -23.05 15.23 -3.76 -0.06 -23.11 16 20 C 0.06 1.50 6.72 41.91 0.28 1.78 16 21 C -0.12 -2.62 9.63 22.61 0.22 -2.40 16 22 C -0.08 -0.95 10.17 22.45 0.23 -0.73 16 23 C -0.13 -1.25 10.11 22.44 0.23 -1.02 16 24 C 0.09 1.20 11.18 84.82 0.95 2.15 16 25 N -0.47 -10.69 6.60 -184.91 -1.22 -11.91 16 26 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 27 H 0.06 2.40 6.77 -2.38 -0.02 2.38 16 28 H 0.06 2.77 6.72 -2.39 -0.02 2.75 16 29 H 0.38 20.70 4.99 -92.71 -0.46 20.24 16 30 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.11 3.02 5.88 -2.39 -0.01 3.00 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.14 3.06 7.64 -2.91 -0.02 3.04 16 36 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.18 0.20 8.06 -2.91 -0.02 0.17 16 38 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -72.12 313.38 3.11 -69.01 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.61 Total: 29.07 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.49 Total: 9.81 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -4.96 Total: -132.76 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -72.12 3.11 -69.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985890052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.564 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds