Wall clock time and date at job start Mon Mar 30 2020 01:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.00065 * 2 1 4 4 C 1.54327 * 109.88762 * 238.89966 * 2 1 3 5 5 H 1.08999 * 110.71689 * 336.93505 * 4 2 1 6 6 N 1.46502 * 110.71779 * 100.02451 * 4 2 1 7 7 C 1.36939 * 119.99697 * 202.55921 * 6 4 2 8 8 H 1.08001 * 119.99973 * 0.02562 * 7 6 4 9 9 C 1.38811 * 119.99766 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00211 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99813 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46911 * 60.00503 * 11 9 7 13 13 H 1.48499 * 109.46955 * 300.00159 * 11 9 7 14 14 H 1.48496 * 109.46623 * 180.02562 * 11 9 7 15 15 C 1.55152 * 103.10280 * 218.47875 * 4 2 1 16 16 C 1.54914 * 101.58315 * 35.41467 * 15 4 2 17 17 N 1.47327 * 110.06365 * 121.16719 * 2 1 3 18 18 C 1.34775 * 125.61431 * 298.25147 * 17 2 1 19 19 O 1.21553 * 120.00039 * 353.93218 * 18 17 2 20 20 C 1.47836 * 119.99898 * 173.93578 * 18 17 2 21 21 C 1.40023 * 120.55939 * 342.49294 * 20 18 17 22 22 C 1.38358 * 118.28649 * 179.73944 * 21 20 18 23 23 C 1.38349 * 119.30328 * 0.55755 * 22 21 20 24 24 N 1.31923 * 121.08283 * 359.70394 * 23 22 21 25 25 C 1.31695 * 121.87484 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.47124 * 181.09250 * 1 2 3 27 27 H 1.08996 * 109.47505 * 301.10248 * 1 2 3 28 28 H 1.08999 * 109.46701 * 61.10188 * 1 2 3 29 29 H 0.96995 * 119.99944 * 22.56456 * 6 4 2 30 30 H 0.97001 * 119.99866 * 0.02562 * 10 9 7 31 31 H 1.09000 * 111.00050 * 153.48504 * 15 4 2 32 32 H 1.08992 * 111.00633 * 277.33948 * 15 4 2 33 33 H 1.08994 * 110.37121 * 81.82539 * 16 15 4 34 34 H 1.09001 * 110.36465 * 204.15214 * 16 15 4 35 35 H 1.07996 * 120.85495 * 359.97438 * 21 20 18 36 36 H 1.08008 * 120.34678 * 180.25709 * 22 21 20 37 37 H 1.08001 * 119.45573 * 179.72365 * 23 22 21 38 38 H 1.08000 * 119.71273 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3040 -1.4437 -1.6200 6 7 2.4556 0.1960 -2.2875 7 6 2.5065 -0.2092 -3.5946 8 1 2.2510 -1.2256 -3.8552 9 6 2.8866 0.6866 -4.5845 10 7 3.1985 1.9252 -4.2668 11 14 2.9554 0.1341 -6.3677 12 1 1.6094 -0.3241 -6.7961 13 1 3.9249 -0.9826 -6.5028 14 1 3.3871 1.2699 -7.2213 15 6 3.2870 -1.5177 -0.6956 16 6 2.8161 -1.8830 0.7343 17 7 2.0354 -0.7162 1.1841 18 6 1.8175 -0.3640 2.4666 19 8 1.2483 0.6793 2.7221 20 6 2.2708 -1.2464 3.5627 21 6 2.5882 -2.5870 3.3124 22 6 3.0129 -3.3691 4.3718 23 6 3.0982 -2.8102 5.6345 24 7 2.7872 -1.5450 5.8418 25 6 2.3843 -0.7589 4.8651 26 1 -0.3633 -1.0275 0.0196 27 1 -0.3634 0.5308 0.8799 28 1 -0.3633 0.4966 -0.8997 29 1 2.6847 1.1089 -2.0534 30 1 3.1631 2.2119 -3.3408 31 1 3.4811 -2.4145 -1.2840 32 1 4.1664 -0.8745 -0.6649 33 1 2.1880 -2.7735 0.7110 34 1 3.6742 -2.0400 1.3878 35 1 2.5074 -2.9988 2.3174 36 1 3.2703 -4.4063 4.2156 37 1 3.4251 -3.4196 6.4641 38 1 2.1390 0.2719 5.0741 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985892073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:14 Heat of formation + Delta-G solvation = 8.178890 kcal Electronic energy + Delta-G solvation = -21075.255866 eV Core-core repulsion = 17917.596417 eV Total energy + Delta-G solvation = -3157.659449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94347 -40.51548 -38.85886 -36.35780 -34.37762 -33.00444 -32.51362 -32.11161 -30.52431 -26.87212 -25.88684 -25.30477 -24.26394 -23.51170 -21.93619 -20.68825 -19.44254 -18.37480 -17.96593 -17.66026 -17.29608 -16.64682 -16.27463 -15.90724 -15.48580 -15.20905 -14.94286 -14.80770 -14.49842 -14.34268 -14.20921 -13.78780 -13.46133 -13.13697 -12.94765 -12.74808 -12.71479 -12.34793 -12.15827 -11.86905 -11.76549 -11.36820 -11.20619 -10.99158 -10.87942 -10.50873 -10.27788 -9.81090 -9.14692 -8.37913 -5.34204 -0.39005 0.17817 1.60851 1.66295 1.70870 1.73092 1.86648 2.73175 2.78803 3.18528 3.39688 3.46214 3.55121 3.63482 3.81833 3.84404 3.87450 4.03241 4.05210 4.20625 4.24403 4.35956 4.45428 4.53570 4.55628 4.71865 4.78385 4.90705 4.96497 5.03957 5.10164 5.12940 5.19067 5.33727 5.59596 5.62198 6.34871 6.47973 6.83883 6.91834 7.05605 7.94267 8.08271 9.13219 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036993 B = 0.003867 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.709149 B = 7238.337462 C = 7616.031837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.132 3.868 3 H 0.043 0.957 4 C 0.176 3.824 5 H 0.075 0.925 6 N -0.742 5.742 7 C -0.326 4.326 8 H 0.077 0.923 9 C -0.105 4.105 10 N -0.978 5.978 11 Si 1.128 2.872 12 H -0.277 1.277 13 H -0.274 1.274 14 H -0.299 1.299 15 C -0.148 4.148 16 C 0.097 3.903 17 N -0.603 5.603 18 C 0.571 3.429 19 O -0.579 6.579 20 C -0.196 4.196 21 C -0.057 4.057 22 C -0.164 4.164 23 C 0.115 3.885 24 N -0.512 5.512 25 C 0.141 3.859 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.356 0.644 30 H 0.242 0.758 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.195 0.805 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -16.895 16.454 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.062 0.938 4 C 0.066 3.934 5 H 0.093 0.907 6 N -0.383 5.383 7 C -0.457 4.457 8 H 0.095 0.905 9 C -0.296 4.296 10 N -0.626 5.626 11 Si 0.953 3.047 12 H -0.203 1.203 13 H -0.200 1.200 14 H -0.226 1.226 15 C -0.189 4.189 16 C -0.024 4.024 17 N -0.335 5.335 18 C 0.361 3.639 19 O -0.460 6.460 20 C -0.201 4.201 21 C -0.083 4.083 22 C -0.183 4.183 23 C -0.041 4.041 24 N -0.220 5.220 25 C -0.016 4.016 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.188 0.812 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.192 0.808 36 H 0.202 0.798 37 H 0.211 0.789 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.269 -15.743 15.874 22.359 hybrid contribution -0.349 0.442 0.733 0.925 sum -0.618 -15.301 16.608 22.590 Atomic orbital electron populations 1.21923 0.93824 1.02767 1.01665 1.21739 0.95060 0.95440 0.85017 0.93840 1.21389 0.95106 0.90894 0.85999 0.90710 1.42554 1.81813 1.10207 1.03679 1.20374 1.41894 0.98091 0.85381 0.90494 1.27205 0.99812 0.94156 1.08427 1.71000 1.54140 1.18468 1.18992 0.82627 0.77086 0.74605 0.70405 1.20264 1.19963 1.22579 1.23423 0.98801 1.01527 0.95165 1.22981 0.95887 0.88248 0.95331 1.48518 1.51833 1.29075 1.04063 1.18231 0.78812 0.85085 0.81735 1.90750 1.45200 1.26272 1.83777 1.20776 1.08100 0.96529 0.94721 1.22839 0.91421 0.91282 1.02737 1.22612 1.00031 1.03239 0.92423 1.23743 0.91537 0.90492 0.98354 1.67836 1.12483 1.07032 1.34697 1.22871 0.91590 0.99961 0.87224 0.90714 0.93066 0.92171 0.81156 0.94768 0.88601 0.92931 0.87225 0.88149 0.80755 0.79770 0.78853 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.11 71.98 0.66 -4.04 16 2 C 0.13 4.60 3.19 45.28 0.14 4.74 16 3 H 0.04 1.81 7.70 -2.39 -0.02 1.79 16 4 C 0.18 6.40 3.12 46.18 0.14 6.54 16 5 H 0.08 2.64 7.81 -2.39 -0.02 2.62 16 6 N -0.74 -35.81 5.24 -317.32 -1.66 -37.47 16 7 C -0.33 -17.35 9.97 84.03 0.84 -16.51 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 C -0.11 -5.93 5.50 84.86 0.47 -5.46 16 10 N -0.98 -60.94 13.70 21.65 0.30 -60.64 16 11 Si 1.13 50.25 29.92 68.60 2.05 52.30 16 12 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 15 C -0.15 -4.32 6.77 31.99 0.22 -4.10 16 16 C 0.10 2.03 4.93 86.86 0.43 2.46 16 17 N -0.60 -17.45 3.08 -790.72 -2.43 -19.89 16 18 C 0.57 17.79 7.48 86.78 0.65 18.44 16 19 O -0.58 -22.65 15.82 -3.88 -0.06 -22.71 16 20 C -0.20 -4.70 5.79 -20.00 -0.12 -4.81 16 21 C -0.06 -0.89 8.24 22.73 0.19 -0.70 16 22 C -0.16 -1.72 10.10 22.32 0.23 -1.50 16 23 C 0.12 1.57 11.17 84.71 0.95 2.51 16 24 N -0.51 -11.11 10.35 -194.76 -2.01 -13.12 16 25 C 0.14 3.51 10.76 85.02 0.91 4.43 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 1.77 7.14 -2.39 -0.02 1.75 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.36 18.78 6.37 -92.71 -0.59 18.19 16 30 H 0.24 15.18 6.77 -92.71 -0.63 14.55 16 31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.54 7.01 -2.39 -0.02 1.53 16 34 H 0.10 1.68 6.48 -2.39 -0.02 1.67 16 35 H 0.18 1.94 4.10 -2.91 -0.01 1.93 16 36 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 37 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.15 4.01 7.76 -2.91 -0.02 3.99 16 Total: -1.00 -74.67 313.20 2.51 -72.15 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.63 Total: 27.39 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.70 Total: 1.99 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -5.81 Total: -131.12 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.71 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.30 kcal Total: -74.67 2.51 -72.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985892073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.330 kcal (2) G-P(sol) polarization free energy of solvation -74.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds