Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.87391 * 2 1 4 4 C 1.54331 * 110.00928 * 121.09433 * 2 1 3 5 5 C 1.55157 * 102.94286 * 141.68742 * 4 2 1 6 6 H 1.08993 * 111.00501 * 206.38903 * 5 4 2 7 7 N 1.46492 * 111.00563 * 82.56936 * 5 4 2 8 8 C 1.36943 * 119.99790 * 155.00121 * 7 5 4 9 9 H 1.07997 * 120.00194 * 0.02562 * 8 7 5 10 10 C 1.38809 * 119.99970 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00144 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00163 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47046 * 90.00270 * 12 10 8 14 14 H 1.48502 * 109.47366 * 210.00242 * 12 10 8 15 15 H 1.48497 * 109.47046 * 330.00106 * 12 10 8 16 16 C 1.55133 * 101.48299 * 324.32846 * 5 4 2 17 17 N 1.47021 * 109.88577 * 238.97843 * 2 1 3 18 18 C 1.34778 * 125.64796 * 61.45322 * 17 2 1 19 19 O 1.21516 * 119.99557 * 0.02562 * 18 17 2 20 20 C 1.48160 * 120.00249 * 179.97438 * 18 17 2 21 21 C 1.39313 * 119.72712 * 179.97438 * 20 18 17 22 22 C 1.38583 * 119.06035 * 179.97438 * 21 20 18 23 23 C 1.38622 * 118.49264 * 0.02562 * 22 21 20 24 24 C 1.38566 * 119.35053 * 359.97438 * 23 22 21 25 25 N 1.31519 * 120.90104 * 0.28287 * 24 23 22 26 26 H 1.08998 * 109.47113 * 179.56585 * 1 2 3 27 27 H 1.08999 * 109.47511 * 299.56636 * 1 2 3 28 28 H 1.09000 * 109.46696 * 59.56596 * 1 2 3 29 29 H 1.09003 * 110.71684 * 260.04354 * 4 2 1 30 30 H 1.08995 * 110.72067 * 23.31764 * 4 2 1 31 31 H 0.96997 * 120.00991 * 335.00199 * 7 5 4 32 32 H 0.96993 * 120.00065 * 180.02562 * 11 10 8 33 33 H 1.08990 * 110.50196 * 278.45831 * 16 5 4 34 34 H 1.09006 * 110.34075 * 156.05672 * 16 5 4 35 35 H 1.07996 * 120.46582 * 0.02562 * 21 20 18 36 36 H 1.08004 * 120.75583 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.32639 * 179.97438 * 23 22 21 38 38 H 1.08002 * 119.54614 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7489 1.2418 5 6 3.2918 -1.5107 0.6896 6 1 3.4925 -2.4069 1.2765 7 7 4.4696 -0.6406 0.6454 8 6 5.7252 -1.1851 0.6929 9 1 5.8472 -2.2559 0.7625 10 6 6.8412 -0.3607 0.6516 11 7 8.0481 -0.8841 0.6967 12 14 6.6303 1.4914 0.5305 13 1 6.5600 2.0718 1.8955 14 1 7.7864 2.0748 -0.1965 15 1 5.3770 1.7999 -0.2038 16 6 2.8131 -1.8795 -0.7392 17 7 2.0300 -0.7125 -1.1848 18 6 1.8050 -0.3605 -2.4662 19 8 1.1375 0.6233 -2.7177 20 6 2.3725 -1.1722 -3.5681 21 6 2.1359 -0.8034 -4.8905 22 6 2.6738 -1.5722 -5.9103 23 6 3.4295 -2.6840 -5.5721 24 6 3.6243 -2.9918 -4.2352 25 7 3.0979 -2.2476 -3.2872 26 1 -0.3633 -1.0276 -0.0078 27 1 -0.3634 0.5071 0.8938 28 1 -0.3633 0.5206 -0.8861 29 1 2.3556 -0.0450 2.0190 30 1 1.3103 -1.4471 1.6180 31 1 4.3602 0.3211 0.5826 32 1 8.8279 -0.3080 0.6682 33 1 2.1853 -2.7700 -0.7134 34 1 3.6682 -2.0359 -1.3967 35 1 1.5424 0.0698 -5.1176 36 1 2.5080 -1.3112 -6.9451 37 1 3.8623 -3.3043 -6.3431 38 1 4.2122 -3.8576 -3.9681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987771701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = 31.046491 kcal Electronic energy + Delta-G solvation = -21615.541463 eV Core-core repulsion = 18458.873627 eV Total energy + Delta-G solvation = -3156.667835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60397 -39.22007 -37.33021 -34.07917 -32.91409 -31.72830 -31.44424 -30.72682 -28.90931 -25.52961 -24.77550 -23.49372 -23.34563 -21.84951 -20.10797 -19.25755 -17.68381 -17.12960 -16.80698 -15.99904 -15.82258 -15.10594 -14.78750 -14.39912 -14.02981 -13.95408 -13.50318 -13.28330 -13.13670 -12.93882 -12.61789 -12.26625 -12.06346 -11.90795 -11.81495 -11.36195 -11.04817 -10.80651 -10.63600 -10.32487 -10.05321 -10.00411 -9.91040 -9.59982 -9.30884 -9.20518 -8.89344 -8.22976 -7.27390 -5.79060 -3.14471 0.69606 1.20320 2.93323 3.21015 3.37530 3.42719 3.45552 3.95718 4.22707 4.58393 4.70137 4.76122 4.94221 5.00287 5.03282 5.14219 5.21455 5.37129 5.37937 5.54449 5.62711 5.69683 5.79433 5.85162 5.90712 5.98897 6.03964 6.20788 6.26644 6.33102 6.46005 6.51589 6.63254 6.66736 7.02894 7.76329 7.88537 7.96914 8.39562 8.41811 9.17968 9.90953 10.10095 11.38933 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.007194 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.127443 B = 3891.229923 C = 4903.828480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 H 0.071 0.929 4 C -0.142 4.142 5 C 0.169 3.831 6 H 0.082 0.918 7 N -0.736 5.736 8 C -0.243 4.243 9 H 0.093 0.907 10 C 0.008 3.992 11 N -0.932 5.932 12 Si 0.879 3.121 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.278 1.278 16 C 0.073 3.927 17 N -0.579 5.579 18 C 0.580 3.420 19 O -0.550 6.550 20 C 0.088 3.912 21 C -0.118 4.118 22 C -0.085 4.085 23 C -0.156 4.156 24 C 0.098 3.902 25 N -0.441 5.441 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.361 0.639 32 H 0.259 0.741 33 H 0.056 0.944 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 -3.780 -9.084 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 H 0.090 0.910 4 C -0.181 4.181 5 C 0.057 3.943 6 H 0.100 0.900 7 N -0.377 5.377 8 C -0.373 4.373 9 H 0.111 0.889 10 C -0.188 4.188 11 N -0.579 5.579 12 Si 0.709 3.291 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.052 4.052 17 N -0.310 5.310 18 C 0.367 3.633 19 O -0.429 6.429 20 C -0.050 4.050 21 C -0.139 4.139 22 C -0.111 4.111 23 C -0.176 4.176 24 C -0.061 4.061 25 N -0.153 5.153 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.194 0.806 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.809 -3.590 -8.346 16.529 hybrid contribution 0.004 1.551 -1.144 1.927 sum -13.805 -2.039 -9.490 16.875 Atomic orbital electron populations 1.22124 0.95126 1.01958 1.02510 1.21579 0.93923 0.96571 0.84919 0.91046 1.23127 0.98687 1.00177 0.96122 1.21437 0.85947 0.94200 0.92678 0.89999 1.42682 1.01904 1.04197 1.88944 1.19072 0.81224 0.94139 1.42826 0.88904 1.24631 0.95122 0.97146 1.01881 1.69692 0.96865 1.34060 1.57326 0.86630 0.77024 0.87559 0.77848 1.20983 1.21764 1.20394 1.23741 0.95994 0.85827 0.99640 1.48313 1.50175 1.28544 1.03925 1.17510 0.80436 0.83897 0.81447 1.90722 1.41254 1.27407 1.83521 1.21172 0.96943 0.93875 0.93004 1.22077 0.99156 1.00470 0.92152 1.21573 0.95582 0.94157 0.99796 1.22367 0.98964 0.97963 0.98277 1.22970 0.96308 0.98199 0.88623 1.67972 1.06344 1.04024 1.36916 0.92673 0.91888 0.91557 0.89895 0.90327 0.80573 0.93074 0.92557 0.86810 0.83741 0.84355 0.84429 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.11 37.16 0.34 -1.85 16 2 C 0.13 2.15 3.45 -66.95 -0.23 1.92 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.14 -2.13 6.08 -24.89 -0.15 -2.28 16 5 C 0.17 3.11 3.72 -65.66 -0.24 2.86 16 6 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 7 N -0.74 -17.05 5.05 -51.24 -0.26 -17.31 16 8 C -0.24 -6.66 10.44 -15.06 -0.16 -6.82 16 9 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 10 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 11 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 12 Si 0.88 22.49 27.74 -169.99 -4.71 17.78 16 13 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 15 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 16 C 0.07 1.29 5.66 -2.41 -0.01 1.28 16 17 N -0.58 -10.35 3.06 -163.86 -0.50 -10.85 16 18 C 0.58 10.79 7.63 -12.19 -0.09 10.69 16 19 O -0.55 -11.02 15.35 5.35 0.08 -10.93 16 20 C 0.09 1.46 6.72 -83.01 -0.56 0.90 16 21 C -0.12 -1.60 9.63 -39.05 -0.38 -1.97 16 22 C -0.09 -0.89 10.17 -39.31 -0.40 -1.29 16 23 C -0.16 -1.57 10.11 -39.32 -0.40 -1.97 16 24 C 0.10 1.23 11.18 -17.56 -0.20 1.03 16 25 N -0.44 -7.03 6.59 -9.80 -0.06 -7.09 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.02 6.87 -51.93 -0.36 0.66 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 31 H 0.36 8.56 5.73 -40.82 -0.23 8.33 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.11 2.28 5.87 -51.93 -0.30 1.98 16 35 H 0.14 1.86 7.64 -52.49 -0.40 1.45 16 36 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -33.40 315.20 -7.61 -41.00 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.10 Total: 8.20 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.58 Total: 2.64 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.05 Total: -63.44 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.40 -7.61 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987771701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.051 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds