Wall clock time and date at job start Mon Mar 30 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.87391 * 2 1 4 4 C 1.54331 * 110.00928 * 121.09433 * 2 1 3 5 5 C 1.55157 * 102.94286 * 141.68742 * 4 2 1 6 6 H 1.08993 * 111.00501 * 206.38903 * 5 4 2 7 7 N 1.46492 * 111.00563 * 82.56936 * 5 4 2 8 8 C 1.36943 * 119.99790 * 155.00121 * 7 5 4 9 9 H 1.07997 * 120.00194 * 0.02562 * 8 7 5 10 10 C 1.38809 * 119.99970 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00144 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00163 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47046 * 90.00270 * 12 10 8 14 14 H 1.48502 * 109.47366 * 210.00242 * 12 10 8 15 15 H 1.48497 * 109.47046 * 330.00106 * 12 10 8 16 16 C 1.55133 * 101.48299 * 324.32846 * 5 4 2 17 17 N 1.47021 * 109.88577 * 238.97843 * 2 1 3 18 18 C 1.34778 * 125.64796 * 61.45322 * 17 2 1 19 19 O 1.21516 * 119.99557 * 0.02562 * 18 17 2 20 20 C 1.48160 * 120.00249 * 179.97438 * 18 17 2 21 21 C 1.39313 * 119.72712 * 179.97438 * 20 18 17 22 22 C 1.38583 * 119.06035 * 179.97438 * 21 20 18 23 23 C 1.38622 * 118.49264 * 0.02562 * 22 21 20 24 24 C 1.38566 * 119.35053 * 359.97438 * 23 22 21 25 25 N 1.31519 * 120.90104 * 0.28287 * 24 23 22 26 26 H 1.08998 * 109.47113 * 179.56585 * 1 2 3 27 27 H 1.08999 * 109.47511 * 299.56636 * 1 2 3 28 28 H 1.09000 * 109.46696 * 59.56596 * 1 2 3 29 29 H 1.09003 * 110.71684 * 260.04354 * 4 2 1 30 30 H 1.08995 * 110.72067 * 23.31764 * 4 2 1 31 31 H 0.96997 * 120.00991 * 335.00199 * 7 5 4 32 32 H 0.96993 * 120.00065 * 180.02562 * 11 10 8 33 33 H 1.08990 * 110.50196 * 278.45831 * 16 5 4 34 34 H 1.09006 * 110.34075 * 156.05672 * 16 5 4 35 35 H 1.07996 * 120.46582 * 0.02562 * 21 20 18 36 36 H 1.08004 * 120.75583 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.32639 * 179.97438 * 23 22 21 38 38 H 1.08002 * 119.54614 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7489 1.2418 5 6 3.2918 -1.5107 0.6896 6 1 3.4925 -2.4069 1.2765 7 7 4.4696 -0.6406 0.6454 8 6 5.7252 -1.1851 0.6929 9 1 5.8472 -2.2559 0.7625 10 6 6.8412 -0.3607 0.6516 11 7 8.0481 -0.8841 0.6967 12 14 6.6303 1.4914 0.5305 13 1 6.5600 2.0718 1.8955 14 1 7.7864 2.0748 -0.1965 15 1 5.3770 1.7999 -0.2038 16 6 2.8131 -1.8795 -0.7392 17 7 2.0300 -0.7125 -1.1848 18 6 1.8050 -0.3605 -2.4662 19 8 1.1375 0.6233 -2.7177 20 6 2.3725 -1.1722 -3.5681 21 6 2.1359 -0.8034 -4.8905 22 6 2.6738 -1.5722 -5.9103 23 6 3.4295 -2.6840 -5.5721 24 6 3.6243 -2.9918 -4.2352 25 7 3.0979 -2.2476 -3.2872 26 1 -0.3633 -1.0276 -0.0078 27 1 -0.3634 0.5071 0.8938 28 1 -0.3633 0.5206 -0.8861 29 1 2.3556 -0.0450 2.0190 30 1 1.3103 -1.4471 1.6180 31 1 4.3602 0.3211 0.5826 32 1 8.8279 -0.3080 0.6682 33 1 2.1853 -2.7700 -0.7134 34 1 3.6682 -2.0359 -1.3967 35 1 1.5424 0.0698 -5.1176 36 1 2.5080 -1.3112 -6.9451 37 1 3.8623 -3.3043 -6.3431 38 1 4.2122 -3.8576 -3.9681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987771701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:45 Heat of formation + Delta-G solvation = 8.586766 kcal Electronic energy + Delta-G solvation = -21616.515389 eV Core-core repulsion = 18458.873627 eV Total energy + Delta-G solvation = -3157.641762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77545 -40.41103 -38.76072 -35.92409 -33.97462 -33.38604 -32.82880 -31.82412 -30.58079 -26.79965 -25.96179 -25.27517 -24.44982 -23.10654 -21.61148 -20.50380 -19.73822 -18.38868 -17.98343 -17.26743 -16.78538 -16.48822 -16.38543 -15.89258 -15.46733 -15.34586 -14.76184 -14.74885 -14.37240 -14.27604 -14.10750 -13.66647 -13.44652 -13.22760 -13.00505 -12.90955 -12.73391 -12.38642 -12.09710 -12.01821 -11.78324 -11.53943 -11.26434 -11.09116 -10.93633 -10.29736 -10.21558 -9.65985 -9.22214 -8.02544 -5.33679 -0.33838 0.28220 1.32894 1.34987 1.40219 1.70060 1.95420 2.45051 2.88338 3.10351 3.27571 3.55572 3.64049 3.84803 3.89671 3.97693 4.06759 4.07391 4.10301 4.33536 4.42093 4.53823 4.68620 4.73354 4.77005 4.85021 5.00896 5.06250 5.11260 5.14777 5.17476 5.29149 5.31079 5.52246 5.73145 5.80731 6.22247 6.47917 6.74387 7.07158 7.10058 7.84194 8.01286 9.18748 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.007194 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.127443 B = 3891.229923 C = 4903.828480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.124 3.876 3 H 0.050 0.950 4 C -0.125 4.125 5 C 0.156 3.844 6 H 0.089 0.911 7 N -0.741 5.741 8 C -0.217 4.217 9 H 0.070 0.930 10 C -0.057 4.057 11 N -0.979 5.979 12 Si 0.941 3.059 13 H -0.274 1.274 14 H -0.299 1.299 15 H -0.273 1.273 16 C 0.087 3.913 17 N -0.585 5.585 18 C 0.569 3.431 19 O -0.577 6.577 20 C 0.049 3.951 21 C -0.124 4.124 22 C -0.078 4.078 23 C -0.135 4.135 24 C 0.080 3.920 25 N -0.471 5.471 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.359 0.641 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.144 0.856 36 H 0.179 0.821 37 H 0.181 0.819 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -4.276 -10.110 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.022 3.978 3 H 0.068 0.932 4 C -0.163 4.163 5 C 0.046 3.954 6 H 0.107 0.893 7 N -0.382 5.382 8 C -0.348 4.348 9 H 0.088 0.912 10 C -0.248 4.248 11 N -0.630 5.630 12 Si 0.770 3.230 13 H -0.200 1.200 14 H -0.226 1.226 15 H -0.199 1.199 16 C -0.038 4.038 17 N -0.315 5.315 18 C 0.358 3.642 19 O -0.458 6.458 20 C -0.088 4.088 21 C -0.146 4.146 22 C -0.103 4.103 23 C -0.155 4.155 24 C -0.079 4.079 25 N -0.183 5.183 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.192 0.808 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.162 0.838 36 H 0.196 0.804 37 H 0.198 0.802 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.398 -4.096 -9.357 18.478 hybrid contribution 0.440 1.558 -0.920 1.862 sum -14.958 -2.538 -10.277 18.325 Atomic orbital electron populations 1.22021 0.93031 1.02704 1.02743 1.21747 0.95621 0.95547 0.84909 0.93159 1.23068 0.97431 1.00328 0.95489 1.21733 0.85659 0.94325 0.93651 0.89325 1.42721 1.01892 1.04599 1.88984 1.19080 0.82927 0.93136 1.39628 0.91161 1.25276 0.94998 1.01178 1.03390 1.69839 0.97624 1.35353 1.60192 0.85627 0.76544 0.82783 0.78032 1.19994 1.22620 1.19855 1.23489 0.95647 0.86639 0.98062 1.48447 1.50127 1.28619 1.04333 1.18015 0.80135 0.83915 0.82174 1.90679 1.42547 1.28591 1.84013 1.21052 0.99286 0.95074 0.93367 1.22240 0.99398 1.00994 0.91929 1.22046 0.94154 0.93270 1.00856 1.22828 0.97034 0.97518 0.98092 1.23474 0.96389 0.98477 0.89587 1.67836 1.07180 1.04522 1.38736 0.91550 0.89329 0.93648 0.89429 0.86778 0.80839 0.93524 0.90432 0.89257 0.83847 0.80371 0.80190 0.80112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.11 71.98 0.66 -3.12 16 2 C 0.12 3.89 3.45 45.34 0.16 4.05 16 3 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 4 C -0.12 -3.45 6.08 31.79 0.19 -3.25 16 5 C 0.16 5.56 3.72 46.46 0.17 5.73 16 6 H 0.09 3.06 8.09 -2.39 -0.02 3.04 16 7 N -0.74 -34.06 5.05 -316.03 -1.60 -35.65 16 8 C -0.22 -12.02 10.44 84.03 0.88 -11.14 16 9 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 10 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 11 N -0.98 -62.28 13.97 21.65 0.30 -61.98 16 12 Si 0.94 47.21 27.74 68.60 1.90 49.12 16 13 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 15 H -0.27 -13.25 6.52 99.48 0.65 -12.60 16 16 C 0.09 3.00 5.66 86.93 0.49 3.50 16 17 N -0.59 -20.80 3.06 -790.61 -2.42 -23.23 16 18 C 0.57 21.53 7.63 86.88 0.66 22.20 16 19 O -0.58 -23.72 15.35 -3.77 -0.06 -23.78 16 20 C 0.05 1.63 6.72 41.91 0.28 1.91 16 21 C -0.12 -3.28 9.63 22.61 0.22 -3.06 16 22 C -0.08 -1.39 10.17 22.44 0.23 -1.17 16 23 C -0.14 -2.27 10.11 22.44 0.23 -2.04 16 24 C 0.08 1.88 11.18 84.82 0.95 2.82 16 25 N -0.47 -14.90 6.59 -184.91 -1.22 -16.12 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.37 6.87 -2.39 -0.02 1.35 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.11 2.39 7.86 -2.39 -0.02 2.38 16 31 H 0.36 16.81 5.73 -92.71 -0.53 16.28 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 3.62 5.87 -2.38 -0.01 3.61 16 35 H 0.14 3.67 7.64 -2.91 -0.02 3.65 16 36 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -75.21 315.20 2.97 -72.24 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.48 Total: 25.86 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 5.58 Total: 13.54 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -4.94 Total: -136.98 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.90 Total: 49.12 kcal Total: -75.21 2.97 -72.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987771701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.824 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds