Wall clock time and date at job start Mon Mar 30 2020 01:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.99846 * 2 1 4 4 C 1.54327 * 109.88263 * 121.09271 * 2 1 3 5 5 C 1.55158 * 102.94170 * 141.60836 * 4 2 1 6 6 H 1.08996 * 111.00608 * 206.38297 * 5 4 2 7 7 N 1.46507 * 110.99946 * 82.57711 * 5 4 2 8 8 C 1.36938 * 119.99631 * 154.99980 * 7 5 4 9 9 H 1.08001 * 120.00226 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99865 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00144 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99688 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47280 * 89.99883 * 12 10 8 14 14 H 1.48510 * 109.46970 * 209.99740 * 12 10 8 15 15 H 1.48496 * 109.47097 * 329.99572 * 12 10 8 16 16 C 1.55124 * 101.48716 * 324.33640 * 5 4 2 17 17 N 1.47028 * 109.88428 * 238.90216 * 2 1 3 18 18 C 1.34772 * 125.64743 * 61.60425 * 17 2 1 19 19 O 1.21515 * 119.99857 * 5.95649 * 18 17 2 20 20 C 1.48150 * 119.99969 * 185.95543 * 18 17 2 21 21 C 1.39818 * 120.92470 * 196.61331 * 20 18 17 22 22 C 1.38145 * 119.00338 * 180.27371 * 21 20 18 23 23 N 1.31817 * 120.89683 * 359.97438 * 22 21 20 24 24 C 1.31815 * 122.04811 * 0.02562 * 23 22 21 25 25 C 1.38150 * 120.89337 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47145 * 179.63966 * 1 2 3 27 27 H 1.08991 * 109.47183 * 299.64545 * 1 2 3 28 28 H 1.09004 * 109.46938 * 59.64350 * 1 2 3 29 29 H 1.09001 * 110.72199 * 259.97699 * 4 2 1 30 30 H 1.09000 * 110.71705 * 23.07173 * 4 2 1 31 31 H 0.96998 * 120.00164 * 334.99252 * 7 5 4 32 32 H 0.96996 * 119.99845 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.49650 * 278.44993 * 16 5 4 34 34 H 1.09000 * 110.34547 * 156.05936 * 16 5 4 35 35 H 1.07998 * 120.49518 * 0.25143 * 21 20 18 36 36 H 1.07996 * 119.55434 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.54992 * 180.02562 * 24 23 22 38 38 H 1.08007 * 120.49483 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 3.2876 -1.5143 0.6925 6 1 3.4856 -2.4106 1.2801 7 7 4.4674 -0.6467 0.6495 8 6 5.7217 -1.1940 0.6989 9 1 5.8412 -2.2650 0.7699 10 6 6.8396 -0.3721 0.6576 11 7 8.0452 -0.8981 0.7045 12 14 6.6328 1.4804 0.5355 13 1 6.5631 2.0617 1.9003 14 1 7.7906 2.0609 -0.1912 15 1 5.3806 1.7913 -0.1996 16 6 2.8099 -1.8825 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3622 -2.4657 19 8 1.2353 0.6795 -2.7191 20 6 2.2602 -1.2452 -3.5657 21 6 2.3591 -0.7677 -4.8761 22 6 2.7802 -1.6272 -5.8722 23 7 3.0869 -2.8801 -5.6002 24 6 3.0076 -3.3703 -4.3792 25 6 2.5956 -2.5807 -3.3232 26 1 -0.3633 -1.0277 -0.0065 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5194 -0.8868 29 1 2.3529 -0.0459 2.0201 30 1 1.3039 -1.4436 1.6201 31 1 4.3601 0.3152 0.5860 32 1 8.8263 -0.3237 0.6761 33 1 2.1801 -2.7718 -0.7114 34 1 3.6655 -2.0413 -1.3931 35 1 2.1095 0.2575 -5.1061 36 1 2.8602 -1.2677 -6.8874 37 1 3.2692 -4.4030 -4.2019 38 1 2.5326 -2.9892 -2.3253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987782406.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:06 Heat of formation + Delta-G solvation = 33.430107 kcal Electronic energy + Delta-G solvation = -21569.916997 eV Core-core repulsion = 18413.352524 eV Total energy + Delta-G solvation = -3156.564474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75384 -39.38435 -37.52774 -34.23503 -33.23116 -31.64524 -31.53196 -30.78218 -29.11271 -25.99348 -24.90656 -23.60604 -23.33160 -21.92995 -20.35339 -19.38760 -17.84652 -17.42854 -16.59944 -16.18243 -15.94489 -15.18938 -14.77059 -14.48322 -14.15444 -14.03772 -13.82899 -13.57115 -13.29889 -13.07039 -12.78866 -12.42921 -12.15540 -12.06088 -11.72173 -11.51263 -11.13273 -10.86996 -10.78815 -10.45693 -10.17641 -10.08739 -9.86316 -9.71303 -9.47347 -9.23534 -9.10133 -8.49400 -7.42797 -5.90123 -3.27720 0.75651 1.06422 2.92358 3.05220 3.30300 3.34726 3.39210 3.85465 4.36507 4.39438 4.48433 4.70309 4.85724 4.90961 4.97967 5.03948 5.05202 5.17647 5.40325 5.46892 5.48516 5.58211 5.66301 5.69721 5.72632 5.81480 5.88357 5.98087 6.01374 6.18904 6.19877 6.34517 6.43948 6.53088 6.59923 7.63320 7.83173 7.85717 8.20712 8.28653 9.05082 9.77970 9.95722 11.27271 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.006887 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.607222 B = 4064.602533 C = 4973.131583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.142 4.142 5 C 0.174 3.826 6 H 0.086 0.914 7 N -0.735 5.735 8 C -0.255 4.255 9 H 0.094 0.906 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.879 3.121 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.057 3.943 17 N -0.593 5.593 18 C 0.572 3.428 19 O -0.542 6.542 20 C -0.079 4.079 21 C -0.119 4.119 22 C 0.091 3.909 23 N -0.474 5.474 24 C 0.094 3.906 25 C -0.152 4.152 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.363 0.637 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 -3.126 -5.178 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.092 0.908 4 C -0.181 4.181 5 C 0.062 3.938 6 H 0.104 0.896 7 N -0.375 5.375 8 C -0.384 4.384 9 H 0.112 0.888 10 C -0.184 4.184 11 N -0.573 5.573 12 Si 0.709 3.291 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.068 4.068 17 N -0.325 5.325 18 C 0.360 3.640 19 O -0.420 6.420 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.066 4.066 23 N -0.183 5.183 24 C -0.063 4.063 25 C -0.172 4.172 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.196 0.804 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.521 -3.229 -6.008 16.043 hybrid contribution -0.156 1.937 0.494 2.005 sum -14.677 -1.292 -5.514 15.731 Atomic orbital electron populations 1.22123 0.94990 1.02023 1.02602 1.21561 0.93921 0.96728 0.84565 0.90824 1.23141 0.98471 1.00264 0.96226 1.21363 0.86191 0.94592 0.91642 0.89577 1.42701 1.01830 1.04305 1.88712 1.19049 0.81178 0.94155 1.44018 0.88845 1.24657 0.95098 0.97324 1.01342 1.69686 0.96945 1.34311 1.56403 0.86634 0.77182 0.87292 0.77945 1.20841 1.21578 1.20335 1.23858 0.94752 0.86961 1.01269 1.48330 1.51240 1.28577 1.04319 1.17825 0.79530 0.85140 0.81474 1.90733 1.43630 1.24249 1.83422 1.20326 0.99771 0.94519 0.94356 1.22270 0.97749 1.01931 0.92051 1.22734 0.95332 0.88929 0.99613 1.67527 1.12906 1.14890 1.23008 1.22790 0.95593 1.00364 0.87507 1.23184 0.97621 0.93842 1.02568 0.92547 0.91650 0.91755 0.89641 0.90108 0.80370 0.92859 0.91571 0.89056 0.83834 0.82241 0.82115 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.10 37.16 0.34 -1.63 16 2 C 0.14 1.97 3.42 -66.95 -0.23 1.74 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.14 -1.88 6.07 -24.89 -0.15 -2.03 16 5 C 0.17 2.85 3.72 -65.66 -0.24 2.60 16 6 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 7 N -0.73 -15.91 5.05 -51.23 -0.26 -16.17 16 8 C -0.25 -6.67 10.44 -15.06 -0.16 -6.83 16 9 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 11 N -0.93 -28.11 13.97 55.49 0.78 -27.33 16 12 Si 0.88 21.79 27.74 -169.99 -4.71 17.07 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 16 C 0.06 0.84 4.65 -2.41 -0.01 0.83 16 17 N -0.59 -9.36 3.06 -163.87 -0.50 -9.86 16 18 C 0.57 9.78 7.50 -12.19 -0.09 9.69 16 19 O -0.54 -10.51 15.84 5.35 0.08 -10.42 16 20 C -0.08 -1.19 5.81 -104.65 -0.61 -1.80 16 21 C -0.12 -1.64 9.68 -39.03 -0.38 -2.02 16 22 C 0.09 1.13 11.17 -17.59 -0.20 0.93 16 23 N -0.47 -6.44 10.34 -13.31 -0.14 -6.58 16 24 C 0.09 1.17 11.17 -17.59 -0.20 0.98 16 25 C -0.15 -2.00 8.25 -39.02 -0.32 -2.32 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.91 7.08 -51.93 -0.37 0.55 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 31 H 0.36 8.11 5.73 -40.82 -0.23 7.88 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.07 0.76 7.07 -51.93 -0.37 0.39 16 34 H 0.09 1.52 6.43 -51.93 -0.33 1.19 16 35 H 0.14 1.85 7.83 -52.49 -0.41 1.44 16 36 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.16 1.83 4.06 -52.48 -0.21 1.62 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -32.67 312.41 -7.27 -39.94 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.88 Total: 8.25 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.34 Total: 0.40 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.12 Total: -59.94 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.67 -7.27 -39.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987782406.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.369 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds