Wall clock time and date at job start Mon Mar 30 2020 01:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.32321 * 2 1 4 4 C 1.55121 * 110.42011 * 237.81715 * 2 1 3 5 5 C 1.55155 * 101.48554 * 204.29075 * 4 2 1 6 6 H 1.09003 * 110.72204 * 276.82731 * 5 4 2 7 7 N 1.46507 * 110.72095 * 153.73660 * 5 4 2 8 8 C 1.36930 * 120.00109 * 157.44037 * 7 5 4 9 9 H 1.08004 * 119.99790 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99848 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00031 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99874 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47272 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47290 * 240.00360 * 12 10 8 15 15 H 1.48506 * 109.46971 * 120.00451 * 12 10 8 16 16 C 1.54323 * 103.10301 * 35.28308 * 5 4 2 17 17 N 1.47022 * 107.26956 * 337.89323 * 16 5 4 18 18 C 1.34772 * 125.64889 * 178.90400 * 17 16 5 19 19 O 1.21518 * 120.00087 * 174.95800 * 18 17 16 20 20 C 1.48147 * 119.99949 * 354.96497 * 18 17 16 21 21 C 1.39814 * 120.92453 * 7.35552 * 20 18 17 22 22 C 1.38147 * 119.00078 * 179.75696 * 21 20 18 23 23 N 1.31812 * 120.89873 * 0.54079 * 22 21 20 24 24 C 1.31810 * 122.04437 * 359.73400 * 23 22 21 25 25 C 1.38141 * 120.90134 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47580 * 299.21095 * 1 2 3 27 27 H 1.09002 * 109.47380 * 59.21297 * 1 2 3 28 28 H 1.09006 * 109.46985 * 179.21034 * 1 2 3 29 29 H 1.09001 * 111.16425 * 86.19773 * 4 2 1 30 30 H 1.08996 * 110.93381 * 322.28648 * 4 2 1 31 31 H 0.96999 * 119.99367 * 337.44180 * 7 5 4 32 32 H 0.96996 * 119.99972 * 359.97438 * 11 10 8 33 33 H 1.08997 * 109.88347 * 97.30916 * 16 5 4 34 34 H 1.09001 * 109.88016 * 218.32707 * 16 5 4 35 35 H 1.08004 * 120.49707 * 0.02562 * 21 20 18 36 36 H 1.08008 * 119.54888 * 180.27422 * 22 21 20 37 37 H 1.08000 * 119.54714 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.50158 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0711 -0.7743 -1.2304 5 6 3.4777 -1.2003 -0.7330 6 1 4.1968 -0.3930 -0.8719 7 7 3.9250 -2.4141 -1.4208 8 6 5.2609 -2.7051 -1.4970 9 1 5.9848 -2.0399 -1.0497 10 6 5.6846 -3.8554 -2.1482 11 7 4.8024 -4.6662 -2.6928 12 14 7.5071 -4.2519 -2.2527 13 1 8.2850 -3.1892 -1.5668 14 1 7.9170 -4.3241 -3.6782 15 1 7.7679 -5.5580 -1.5959 16 6 3.2494 -1.4760 0.7681 17 7 2.0431 -0.7373 1.1690 18 6 1.4965 -0.7351 2.4009 19 8 0.5488 -0.0143 2.6438 20 6 2.0511 -1.6113 3.4589 21 6 3.2303 -2.3326 3.2494 22 6 3.7147 -3.1338 4.2652 23 7 3.0755 -3.2311 5.4139 24 6 1.9583 -2.5728 5.6505 25 6 1.4066 -1.7444 4.6926 26 1 -0.3634 0.5015 0.8969 27 1 -0.3634 0.5260 -0.8828 28 1 -0.3633 -1.0276 -0.0142 29 1 2.1453 -0.1248 -2.1026 30 1 1.4523 -1.6454 -1.4454 31 1 3.2748 -3.0116 -1.8222 32 1 3.8561 -4.4601 -2.6388 33 1 3.1013 -2.5436 0.9306 34 1 4.1076 -1.1290 1.3435 35 1 3.7569 -2.2611 2.3092 36 1 4.6274 -3.6915 4.1146 37 1 1.4681 -2.6820 6.6066 38 1 0.4911 -1.2078 4.8934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987782408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:08 Heat of formation + Delta-G solvation = 40.049358 kcal Electronic energy + Delta-G solvation = -21297.664769 eV Core-core repulsion = 18141.387327 eV Total energy + Delta-G solvation = -3156.277442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84550 -39.40376 -37.53372 -34.60820 -33.38634 -31.66036 -31.54521 -30.75013 -28.35121 -26.08368 -24.78617 -23.68176 -23.41835 -21.81873 -20.66648 -19.59221 -17.62311 -17.35703 -16.74310 -16.06580 -15.97442 -15.28570 -14.86631 -14.71625 -14.24949 -13.90237 -13.75664 -13.61718 -13.57037 -13.25080 -12.90102 -12.36837 -12.07932 -11.99094 -11.75162 -11.13151 -11.00409 -10.74775 -10.63078 -10.47255 -10.13970 -9.98019 -9.89381 -9.47438 -9.33726 -9.25894 -9.05605 -8.55661 -7.27395 -6.26898 -3.30860 0.69066 1.03430 2.86605 2.95020 3.43898 3.49178 3.58534 3.81636 4.29597 4.36465 4.53670 4.71381 4.85642 4.92497 4.95379 5.02020 5.07578 5.29639 5.39745 5.47558 5.50699 5.63863 5.67366 5.70727 5.79197 5.83925 5.87032 5.94291 5.98746 6.20703 6.26858 6.28684 6.48146 6.55357 6.63588 7.54111 7.64893 7.83070 8.12577 8.58424 9.00782 9.87723 10.00497 11.20603 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.005791 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.256703 B = 4833.937788 C = 6348.223164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.077 0.923 4 C -0.138 4.138 5 C 0.176 3.824 6 H 0.071 0.929 7 N -0.724 5.724 8 C -0.345 4.345 9 H 0.069 0.931 10 C -0.037 4.037 11 N -0.938 5.938 12 Si 1.084 2.916 13 H -0.293 1.293 14 H -0.292 1.292 15 H -0.291 1.291 16 C 0.060 3.940 17 N -0.599 5.599 18 C 0.571 3.429 19 O -0.540 6.540 20 C -0.085 4.085 21 C -0.170 4.170 22 C 0.096 3.904 23 N -0.474 5.474 24 C 0.087 3.913 25 C -0.120 4.120 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.370 0.630 32 H 0.257 0.743 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.177 0.823 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 7.348 10.149 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.177 4.177 5 C 0.063 3.937 6 H 0.089 0.911 7 N -0.365 5.365 8 C -0.475 4.475 9 H 0.087 0.913 10 C -0.236 4.236 11 N -0.582 5.582 12 Si 0.915 3.085 13 H -0.220 1.220 14 H -0.219 1.219 15 H -0.218 1.218 16 C -0.065 4.065 17 N -0.332 5.332 18 C 0.360 3.640 19 O -0.419 6.419 20 C -0.096 4.096 21 C -0.189 4.189 22 C -0.061 4.061 23 N -0.183 5.183 24 C -0.069 4.069 25 C -0.141 4.141 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.204 0.796 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.194 0.806 36 H 0.180 0.820 37 H 0.177 0.823 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.529 6.219 10.461 12.986 hybrid contribution -1.575 1.359 -0.119 2.084 sum -6.104 7.579 10.342 14.200 Atomic orbital electron populations 1.22150 0.94141 1.02575 1.03358 1.21936 0.94916 0.95487 0.84219 0.90543 1.23219 0.97674 1.00409 0.96375 1.21166 0.93331 0.90929 0.88235 0.91131 1.42409 1.05525 1.23448 1.65081 1.20110 0.83332 1.08628 1.35480 0.91314 1.25810 1.06876 0.93505 0.97372 1.70835 1.02041 1.38768 1.46560 0.83172 0.73635 0.75457 0.76285 1.21950 1.21875 1.21847 1.23784 0.85387 0.96771 1.00554 1.48484 1.28281 1.47782 1.08671 1.17869 0.82766 0.82249 0.81129 1.90684 1.28441 1.42039 1.80731 1.20351 0.96232 0.97972 0.95012 1.23941 0.96240 0.95526 1.03202 1.22884 0.99143 0.95941 0.88154 1.67541 1.07909 1.20396 1.22471 1.22744 0.92186 0.92862 0.99151 1.22261 1.00830 0.98409 0.92582 0.89846 0.91928 0.92755 0.89808 0.90586 0.79551 0.93182 0.89881 0.91126 0.80625 0.81957 0.82295 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.77 37.15 0.33 -1.87 16 2 C 0.14 1.92 3.74 -66.31 -0.25 1.67 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.02 6.15 -24.47 -0.15 -2.18 16 5 C 0.18 3.07 3.59 -66.09 -0.24 2.83 16 6 H 0.07 1.25 8.11 -51.93 -0.42 0.82 16 7 N -0.72 -16.11 5.16 -51.65 -0.27 -16.37 16 8 C -0.35 -8.77 9.97 -15.06 -0.15 -8.92 16 9 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 10 C -0.04 -1.00 5.50 -17.43 -0.10 -1.09 16 11 N -0.94 -27.29 13.70 55.49 0.76 -26.53 16 12 Si 1.08 24.35 29.92 -169.99 -5.09 19.26 16 13 H -0.29 -6.15 7.11 56.52 0.40 -5.74 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.06 0.96 4.64 -3.06 -0.01 0.94 16 17 N -0.60 -9.13 3.24 -164.14 -0.53 -9.66 16 18 C 0.57 9.12 7.55 -12.19 -0.09 9.03 16 19 O -0.54 -9.50 14.28 5.35 0.08 -9.43 16 20 C -0.08 -1.23 5.91 -104.65 -0.62 -1.85 16 21 C -0.17 -2.35 8.68 -39.03 -0.34 -2.69 16 22 C 0.10 1.26 11.17 -17.59 -0.20 1.06 16 23 N -0.47 -6.42 10.34 -13.31 -0.14 -6.56 16 24 C 0.09 1.03 11.17 -17.60 -0.20 0.83 16 25 C -0.12 -1.53 9.68 -39.02 -0.38 -1.91 16 26 H 0.08 1.24 5.93 -51.93 -0.31 0.93 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 31 H 0.37 8.65 6.57 -40.82 -0.27 8.38 16 32 H 0.26 7.33 6.77 -40.82 -0.28 7.06 16 33 H 0.08 1.42 6.55 -51.93 -0.34 1.08 16 34 H 0.07 1.05 6.84 -51.93 -0.36 0.70 16 35 H 0.18 2.46 2.96 -52.78 -0.16 2.31 16 36 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.14 1.67 7.76 -52.49 -0.41 1.26 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -30.44 310.41 -7.59 -38.02 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -4.69 Total: 10.72 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.39 Total: -4.13 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.18 Total: -59.13 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.09 Total: 19.26 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.44 -7.59 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987782408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.072 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds