Wall clock time and date at job start Mon Mar 30 2020 01:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.32321 * 2 1 4 4 C 1.55121 * 110.42011 * 237.81715 * 2 1 3 5 5 C 1.55155 * 101.48554 * 204.29075 * 4 2 1 6 6 H 1.09003 * 110.72204 * 276.82731 * 5 4 2 7 7 N 1.46507 * 110.72095 * 153.73660 * 5 4 2 8 8 C 1.36930 * 120.00109 * 157.44037 * 7 5 4 9 9 H 1.08004 * 119.99790 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99848 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00031 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99874 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47272 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47290 * 240.00360 * 12 10 8 15 15 H 1.48506 * 109.46971 * 120.00451 * 12 10 8 16 16 C 1.54323 * 103.10301 * 35.28308 * 5 4 2 17 17 N 1.47022 * 107.26956 * 337.89323 * 16 5 4 18 18 C 1.34772 * 125.64889 * 178.90400 * 17 16 5 19 19 O 1.21518 * 120.00087 * 174.95800 * 18 17 16 20 20 C 1.48147 * 119.99949 * 354.96497 * 18 17 16 21 21 C 1.39814 * 120.92453 * 7.35552 * 20 18 17 22 22 C 1.38147 * 119.00078 * 179.75696 * 21 20 18 23 23 N 1.31812 * 120.89873 * 0.54079 * 22 21 20 24 24 C 1.31810 * 122.04437 * 359.73400 * 23 22 21 25 25 C 1.38141 * 120.90134 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47580 * 299.21095 * 1 2 3 27 27 H 1.09002 * 109.47380 * 59.21297 * 1 2 3 28 28 H 1.09006 * 109.46985 * 179.21034 * 1 2 3 29 29 H 1.09001 * 111.16425 * 86.19773 * 4 2 1 30 30 H 1.08996 * 110.93381 * 322.28648 * 4 2 1 31 31 H 0.96999 * 119.99367 * 337.44180 * 7 5 4 32 32 H 0.96996 * 119.99972 * 359.97438 * 11 10 8 33 33 H 1.08997 * 109.88347 * 97.30916 * 16 5 4 34 34 H 1.09001 * 109.88016 * 218.32707 * 16 5 4 35 35 H 1.08004 * 120.49707 * 0.02562 * 21 20 18 36 36 H 1.08008 * 119.54888 * 180.27422 * 22 21 20 37 37 H 1.08000 * 119.54714 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.50158 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0711 -0.7743 -1.2304 5 6 3.4777 -1.2003 -0.7330 6 1 4.1968 -0.3930 -0.8719 7 7 3.9250 -2.4141 -1.4208 8 6 5.2609 -2.7051 -1.4970 9 1 5.9848 -2.0399 -1.0497 10 6 5.6846 -3.8554 -2.1482 11 7 4.8024 -4.6662 -2.6928 12 14 7.5071 -4.2519 -2.2527 13 1 8.2850 -3.1892 -1.5668 14 1 7.9170 -4.3241 -3.6782 15 1 7.7679 -5.5580 -1.5959 16 6 3.2494 -1.4760 0.7681 17 7 2.0431 -0.7373 1.1690 18 6 1.4965 -0.7351 2.4009 19 8 0.5488 -0.0143 2.6438 20 6 2.0511 -1.6113 3.4589 21 6 3.2303 -2.3326 3.2494 22 6 3.7147 -3.1338 4.2652 23 7 3.0755 -3.2311 5.4139 24 6 1.9583 -2.5728 5.6505 25 6 1.4066 -1.7444 4.6926 26 1 -0.3634 0.5015 0.8969 27 1 -0.3634 0.5260 -0.8828 28 1 -0.3633 -1.0276 -0.0142 29 1 2.1453 -0.1248 -2.1026 30 1 1.4523 -1.6454 -1.4454 31 1 3.2748 -3.0116 -1.8222 32 1 3.8561 -4.4601 -2.6388 33 1 3.1013 -2.5436 0.9306 34 1 4.1076 -1.1290 1.3435 35 1 3.7569 -2.2611 2.3092 36 1 4.6274 -3.6915 4.1146 37 1 1.4681 -2.6820 6.6066 38 1 0.4911 -1.2078 4.8934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987782408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:08 Heat of formation + Delta-G solvation = 20.712619 kcal Electronic energy + Delta-G solvation = -21298.503273 eV Core-core repulsion = 18141.387327 eV Total energy + Delta-G solvation = -3157.115945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00363 -40.52382 -38.87085 -36.33628 -34.51194 -33.28221 -32.66202 -31.84264 -29.95562 -27.29260 -26.05637 -25.43084 -24.46909 -23.04803 -22.04433 -20.77073 -19.42482 -18.56112 -17.96064 -17.30352 -17.04399 -16.64950 -16.26738 -15.94140 -15.79008 -15.39593 -15.04356 -14.80125 -14.69738 -14.42039 -14.26647 -13.64003 -13.31486 -13.22369 -12.88144 -12.67867 -12.63807 -12.26808 -12.02012 -11.83811 -11.81245 -11.24291 -11.14645 -11.01161 -10.97834 -10.46861 -10.25646 -9.80463 -9.16833 -8.35673 -5.33462 -0.40104 0.04145 1.63830 1.67110 1.72960 1.75569 1.84493 2.72410 2.78001 3.10771 3.37145 3.44942 3.59680 3.68732 3.70227 3.82251 3.92327 4.03278 4.05718 4.16254 4.33138 4.37222 4.51418 4.58019 4.61830 4.71544 4.74696 4.77557 4.92594 5.00525 5.02278 5.16657 5.20889 5.40746 5.56526 5.64955 6.29330 6.52176 6.83483 6.88611 7.07386 7.96965 8.08214 9.15603 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.005791 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.256703 B = 4833.937788 C = 6348.223164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.091 0.909 4 C -0.126 4.126 5 C 0.168 3.832 6 H 0.074 0.926 7 N -0.735 5.735 8 C -0.330 4.330 9 H 0.075 0.925 10 C -0.097 4.097 11 N -0.977 5.977 12 Si 1.126 2.874 13 H -0.268 1.268 14 H -0.296 1.296 15 H -0.294 1.294 16 C 0.076 3.924 17 N -0.600 5.600 18 C 0.568 3.432 19 O -0.559 6.559 20 C -0.103 4.103 21 C -0.176 4.176 22 C 0.090 3.910 23 N -0.488 5.488 24 C 0.094 3.906 25 C -0.121 4.121 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.362 0.638 32 H 0.246 0.754 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.195 0.805 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 8.378 11.279 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.109 0.891 4 C -0.165 4.165 5 C 0.058 3.942 6 H 0.092 0.908 7 N -0.376 5.376 8 C -0.461 4.461 9 H 0.093 0.907 10 C -0.289 4.289 11 N -0.624 5.624 12 Si 0.952 3.048 13 H -0.192 1.192 14 H -0.223 1.223 15 H -0.222 1.222 16 C -0.050 4.050 17 N -0.332 5.332 18 C 0.358 3.642 19 O -0.439 6.439 20 C -0.114 4.114 21 C -0.195 4.195 22 C -0.066 4.066 23 N -0.198 5.198 24 C -0.062 4.062 25 C -0.141 4.141 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.195 0.805 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.188 0.812 36 H 0.197 0.803 37 H 0.212 0.788 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.318 7.303 11.618 14.386 hybrid contribution -1.720 1.121 -0.395 2.091 sum -6.039 8.424 11.223 15.277 Atomic orbital electron populations 1.22067 0.93439 1.02036 1.03856 1.22069 0.95464 0.95866 0.83236 0.89076 1.23128 0.95559 1.00453 0.97318 1.21362 0.94901 0.89127 0.88830 0.90825 1.42538 1.04456 1.24802 1.65786 1.20431 0.84813 1.07763 1.33124 0.90714 1.27024 1.09725 0.94172 0.97995 1.70941 1.01800 1.40299 1.49402 0.82618 0.70220 0.75822 0.76105 1.19230 1.22335 1.22154 1.23448 0.86125 0.96096 0.99290 1.48509 1.28024 1.47663 1.08994 1.18112 0.82495 0.82158 0.81426 1.90672 1.29251 1.42931 1.81088 1.20424 0.96951 0.98505 0.95488 1.23855 0.96289 0.96098 1.03284 1.23165 0.99710 0.95762 0.87926 1.67624 1.08657 1.20933 1.22541 1.23310 0.91406 0.91401 1.00130 1.22464 1.01088 0.98508 0.92062 0.91175 0.89489 0.93829 0.88104 0.91415 0.80500 0.94350 0.91327 0.90054 0.81188 0.80335 0.78773 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 8.77 71.98 0.63 -3.31 16 2 C 0.14 3.58 3.74 45.54 0.17 3.75 16 3 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 4 C -0.13 -3.52 6.15 32.06 0.20 -3.32 16 5 C 0.17 5.70 3.59 46.18 0.17 5.86 16 6 H 0.07 2.48 8.11 -2.39 -0.02 2.46 16 7 N -0.74 -32.63 5.16 -317.32 -1.64 -34.27 16 8 C -0.33 -16.60 9.97 84.03 0.84 -15.76 16 9 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 10 C -0.10 -5.24 5.50 84.86 0.47 -4.77 16 11 N -0.98 -57.81 13.70 21.65 0.30 -57.51 16 12 Si 1.13 48.76 29.92 68.60 2.05 50.81 16 13 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 14 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 16 C 0.08 2.34 4.64 86.73 0.40 2.74 16 17 N -0.60 -17.68 3.24 -791.50 -2.57 -20.24 16 18 C 0.57 17.71 7.55 86.88 0.66 18.36 16 19 O -0.56 -19.21 14.28 -3.77 -0.05 -19.26 16 20 C -0.10 -2.89 5.91 -19.88 -0.12 -3.01 16 21 C -0.18 -4.74 8.68 22.63 0.20 -4.55 16 22 C 0.09 2.27 11.17 84.67 0.95 3.22 16 23 N -0.49 -12.32 10.34 -196.01 -2.03 -14.35 16 24 C 0.09 2.01 11.17 84.67 0.95 2.95 16 25 C -0.12 -2.88 9.68 22.63 0.22 -2.66 16 26 H 0.07 2.00 5.93 -2.39 -0.01 1.98 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 31 H 0.36 17.20 6.57 -92.71 -0.61 16.60 16 32 H 0.25 14.46 6.77 -92.71 -0.63 13.83 16 33 H 0.07 2.35 6.55 -2.39 -0.02 2.34 16 34 H 0.08 2.34 6.84 -2.39 -0.02 2.33 16 35 H 0.17 4.70 2.96 -3.18 -0.01 4.69 16 36 H 0.18 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.16 3.31 7.76 -2.91 -0.02 3.29 16 Total: -1.00 -64.67 310.41 2.40 -62.27 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.62 Total: 33.05 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.72 Total: -0.50 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.93 Total: -126.37 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal Total: -64.67 2.40 -62.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987782408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.983 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds