Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.99650 * 2 1 4 4 C 1.54324 * 109.88447 * 238.90522 * 2 1 3 5 5 C 1.55163 * 102.93971 * 218.38721 * 4 2 1 6 6 H 1.08995 * 111.00064 * 153.57275 * 5 4 2 7 7 N 1.46501 * 111.00726 * 277.42693 * 5 4 2 8 8 C 1.36926 * 120.00053 * 198.65033 * 7 5 4 9 9 H 1.08000 * 120.00481 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99870 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99839 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00136 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47082 * 89.99671 * 12 10 8 14 14 H 1.48494 * 109.47611 * 210.00211 * 12 10 8 15 15 H 1.48510 * 109.47049 * 330.00496 * 12 10 8 16 16 C 1.54909 * 101.58261 * 35.50035 * 5 4 2 17 17 N 1.47017 * 109.88240 * 121.09014 * 2 1 3 18 18 C 1.34776 * 125.65186 * 298.62752 * 17 2 1 19 19 O 1.21551 * 120.00004 * 174.51267 * 18 17 2 20 20 C 1.47843 * 119.99813 * 354.51384 * 18 17 2 21 21 C 1.40029 * 120.55560 * 177.59978 * 20 18 17 22 22 C 1.38357 * 118.28194 * 179.73333 * 21 20 18 23 23 C 1.38351 * 119.30373 * 0.54269 * 22 21 20 24 24 N 1.31925 * 121.08179 * 359.72033 * 23 22 21 25 25 C 1.31691 * 121.87669 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47277 * 281.04112 * 1 2 3 27 27 H 1.09000 * 109.46984 * 41.04573 * 1 2 3 28 28 H 1.09003 * 109.46995 * 161.03969 * 1 2 3 29 29 H 1.08998 * 110.72150 * 100.02469 * 4 2 1 30 30 H 1.08997 * 110.86968 * 336.81605 * 4 2 1 31 31 H 0.97003 * 119.99572 * 18.64830 * 7 5 4 32 32 H 0.97003 * 119.99730 * 180.02562 * 11 10 8 33 33 H 1.08995 * 110.36898 * 204.14907 * 16 5 4 34 34 H 1.09006 * 110.36860 * 81.82718 * 16 5 4 35 35 H 1.07999 * 120.85541 * 359.97438 * 21 20 18 36 36 H 1.08005 * 120.34739 * 180.27619 * 22 21 20 37 37 H 1.08003 * 119.45670 * 179.69962 * 23 22 21 38 38 H 1.08002 * 119.71115 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5141 -0.6923 6 1 3.4853 -2.4109 -1.2795 7 7 4.4675 -0.6467 -0.6492 8 6 5.7189 -1.1964 -0.5672 9 1 5.8362 -2.2695 -0.5338 10 6 6.8368 -0.3745 -0.5269 11 7 6.6938 0.9333 -0.5671 12 14 8.5440 -1.1244 -0.4157 13 1 9.0722 -1.3578 -1.7838 14 1 9.4463 -0.1958 0.3115 15 1 8.4708 -2.4160 0.3136 16 6 2.8146 -1.8793 0.7369 17 7 2.0300 -0.7139 1.1839 18 6 1.8037 -0.3643 2.4658 19 8 2.1833 -1.0847 3.3682 20 6 1.0937 0.8953 2.7741 21 6 0.8083 1.2454 4.0995 22 6 0.1468 2.4377 4.3346 23 6 -0.2180 3.2325 3.2626 24 7 0.0595 2.8743 2.0236 25 6 0.6923 1.7524 1.7492 26 1 -0.3634 0.1968 1.0086 27 1 -0.3633 0.7751 -0.6748 28 1 -0.3633 -0.9719 -0.3339 29 1 2.3529 -0.0460 -2.0201 30 1 1.3066 -1.4459 -1.6210 31 1 4.3621 0.3171 -0.6789 32 1 7.4750 1.5077 -0.5393 33 1 3.6717 -2.0337 1.3923 34 1 2.1887 -2.7714 0.7130 35 1 1.1004 0.6033 4.9173 36 1 -0.0862 2.7426 5.3442 37 1 -0.7388 4.1613 3.4430 38 1 0.9019 1.4936 0.7218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987816857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = 55.102719 kcal Electronic energy + Delta-G solvation = -21590.105137 eV Core-core repulsion = 18434.480458 eV Total energy + Delta-G solvation = -3155.624679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99632 -39.16430 -37.48911 -34.50686 -32.49730 -32.44008 -31.34490 -30.67707 -28.47870 -25.99192 -24.47481 -23.77067 -23.29360 -22.09039 -20.16994 -19.36986 -17.56720 -17.37729 -16.90479 -16.33011 -15.56900 -15.08966 -14.79614 -14.61225 -14.10066 -13.67891 -13.48525 -13.43855 -13.13466 -12.96382 -12.73391 -12.44857 -12.07710 -11.82868 -11.66295 -11.16105 -10.98347 -10.78129 -10.66389 -10.45767 -10.06815 -9.96737 -9.93645 -9.73921 -9.36560 -9.11234 -9.05211 -8.31451 -7.05408 -5.83401 -3.13506 0.67300 1.17568 3.03547 3.21111 3.41195 3.47157 3.48571 3.86883 4.27556 4.53106 4.57040 4.71173 4.77206 4.85026 4.93442 4.94439 5.14145 5.32495 5.38890 5.43716 5.50985 5.63501 5.68700 5.73210 5.83509 5.97854 6.01191 6.06111 6.16565 6.23443 6.34878 6.47856 6.53582 6.64006 6.79256 7.65017 7.80141 7.82696 8.33964 8.39609 9.46105 9.99625 10.34026 11.38761 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.005217 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.528073 B = 5365.355366 C = 5712.614108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.167 3.833 6 H 0.074 0.926 7 N -0.712 5.712 8 C -0.246 4.246 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.080 3.920 17 N -0.590 5.590 18 C 0.575 3.425 19 O -0.542 6.542 20 C -0.182 4.182 21 C -0.020 4.020 22 C -0.187 4.187 23 C 0.113 3.887 24 N -0.491 5.491 25 C 0.098 3.902 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.385 0.615 32 H 0.256 0.744 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.157 0.843 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 1.471 3.317 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.009 3.991 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.055 3.945 6 H 0.092 0.908 7 N -0.352 5.352 8 C -0.377 4.377 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.216 1.216 14 H -0.218 1.218 15 H -0.206 1.206 16 C -0.046 4.046 17 N -0.322 5.322 18 C 0.364 3.636 19 O -0.421 6.421 20 C -0.187 4.187 21 C -0.047 4.047 22 C -0.207 4.207 23 C -0.044 4.044 24 N -0.200 5.200 25 C -0.059 4.059 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.219 0.781 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.191 1.553 3.186 16.575 hybrid contribution 1.210 -0.427 1.008 1.632 sum -14.981 1.127 4.194 15.598 Atomic orbital electron populations 1.22730 0.94911 1.03287 1.02759 1.22011 0.93531 0.96931 0.86611 0.89269 1.23070 0.98472 1.00035 0.95770 1.21387 0.86874 0.94525 0.91716 0.90806 1.42311 1.00305 1.05105 1.87445 1.19220 0.83298 0.91896 1.43321 0.90917 1.24754 0.98007 0.95326 1.02392 1.69655 1.29117 1.02005 1.56957 0.86184 0.84387 0.78046 0.77525 1.21603 1.21777 1.20644 1.23359 0.94682 0.86320 1.00191 1.48259 1.51216 1.28739 1.03943 1.17593 0.79491 0.84834 0.81691 1.90748 1.52903 1.53486 1.44983 1.21062 1.04142 0.98013 0.95509 1.21733 0.91611 0.95164 0.96173 1.22103 1.01719 0.95835 1.01075 1.23021 0.94640 0.98612 0.88078 1.67870 1.13150 1.16377 1.22555 1.25156 0.90290 0.88129 1.02301 0.91794 0.90595 0.91451 0.89352 0.90211 0.78125 0.93399 0.89817 0.92631 0.83764 0.84313 0.82552 0.78348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 7.82 37.16 0.29 -1.69 16 2 C 0.11 1.57 2.69 -66.96 -0.18 1.39 16 3 H 0.09 1.31 6.06 -51.92 -0.31 1.00 16 4 C -0.13 -1.86 6.04 -24.89 -0.15 -2.01 16 5 C 0.17 3.02 3.69 -65.78 -0.24 2.78 16 6 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 7 N -0.71 -16.82 5.27 -51.35 -0.27 -17.10 16 8 C -0.25 -6.61 9.98 -15.06 -0.15 -6.76 16 9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 12 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.08 1.45 6.58 -2.53 -0.02 1.43 16 17 N -0.59 -10.17 3.07 -166.43 -0.51 -10.68 16 18 C 0.58 10.69 7.53 -12.33 -0.09 10.60 16 19 O -0.54 -11.74 16.73 5.32 0.09 -11.65 16 20 C -0.18 -2.86 5.34 -104.82 -0.56 -3.42 16 21 C -0.02 -0.28 9.72 -38.87 -0.38 -0.65 16 22 C -0.19 -2.02 10.10 -39.50 -0.40 -2.42 16 23 C 0.11 1.26 11.17 -17.47 -0.20 1.07 16 24 N -0.49 -6.72 10.35 -12.91 -0.13 -6.86 16 25 C 0.10 1.40 7.80 -17.14 -0.13 1.27 16 26 H 0.06 0.78 4.98 -51.93 -0.26 0.52 16 27 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.07 0.68 7.66 -51.93 -0.40 0.29 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.08 0.89 7.56 -51.93 -0.39 0.49 16 31 H 0.38 9.74 7.82 -40.82 -0.32 9.42 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 33 H 0.08 1.82 8.09 -51.93 -0.42 1.40 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.14 1.89 7.74 -52.49 -0.41 1.48 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.20 2.69 2.04 -55.62 -0.11 2.57 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -32.87 310.01 -7.46 -40.33 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.70 Total: 9.75 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.30 Total: 1.26 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.19 Total: -61.56 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.87 -7.46 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987816857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.435 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds