Wall clock time and date at job start Mon Mar 30 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.99650 * 2 1 4 4 C 1.54324 * 109.88447 * 238.90522 * 2 1 3 5 5 C 1.55163 * 102.93971 * 218.38721 * 4 2 1 6 6 H 1.08995 * 111.00064 * 153.57275 * 5 4 2 7 7 N 1.46501 * 111.00726 * 277.42693 * 5 4 2 8 8 C 1.36926 * 120.00053 * 198.65033 * 7 5 4 9 9 H 1.08000 * 120.00481 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99870 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99839 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00136 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47082 * 89.99671 * 12 10 8 14 14 H 1.48494 * 109.47611 * 210.00211 * 12 10 8 15 15 H 1.48510 * 109.47049 * 330.00496 * 12 10 8 16 16 C 1.54909 * 101.58261 * 35.50035 * 5 4 2 17 17 N 1.47017 * 109.88240 * 121.09014 * 2 1 3 18 18 C 1.34776 * 125.65186 * 298.62752 * 17 2 1 19 19 O 1.21551 * 120.00004 * 174.51267 * 18 17 2 20 20 C 1.47843 * 119.99813 * 354.51384 * 18 17 2 21 21 C 1.40029 * 120.55560 * 177.59978 * 20 18 17 22 22 C 1.38357 * 118.28194 * 179.73333 * 21 20 18 23 23 C 1.38351 * 119.30373 * 0.54269 * 22 21 20 24 24 N 1.31925 * 121.08179 * 359.72033 * 23 22 21 25 25 C 1.31691 * 121.87669 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47277 * 281.04112 * 1 2 3 27 27 H 1.09000 * 109.46984 * 41.04573 * 1 2 3 28 28 H 1.09003 * 109.46995 * 161.03969 * 1 2 3 29 29 H 1.08998 * 110.72150 * 100.02469 * 4 2 1 30 30 H 1.08997 * 110.86968 * 336.81605 * 4 2 1 31 31 H 0.97003 * 119.99572 * 18.64830 * 7 5 4 32 32 H 0.97003 * 119.99730 * 180.02562 * 11 10 8 33 33 H 1.08995 * 110.36898 * 204.14907 * 16 5 4 34 34 H 1.09006 * 110.36860 * 81.82718 * 16 5 4 35 35 H 1.07999 * 120.85541 * 359.97438 * 21 20 18 36 36 H 1.08005 * 120.34739 * 180.27619 * 22 21 20 37 37 H 1.08003 * 119.45670 * 179.69962 * 23 22 21 38 38 H 1.08002 * 119.71115 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5141 -0.6923 6 1 3.4853 -2.4109 -1.2795 7 7 4.4675 -0.6467 -0.6492 8 6 5.7189 -1.1964 -0.5672 9 1 5.8362 -2.2695 -0.5338 10 6 6.8368 -0.3745 -0.5269 11 7 6.6938 0.9333 -0.5671 12 14 8.5440 -1.1244 -0.4157 13 1 9.0722 -1.3578 -1.7838 14 1 9.4463 -0.1958 0.3115 15 1 8.4708 -2.4160 0.3136 16 6 2.8146 -1.8793 0.7369 17 7 2.0300 -0.7139 1.1839 18 6 1.8037 -0.3643 2.4658 19 8 2.1833 -1.0847 3.3682 20 6 1.0937 0.8953 2.7741 21 6 0.8083 1.2454 4.0995 22 6 0.1468 2.4377 4.3346 23 6 -0.2180 3.2325 3.2626 24 7 0.0595 2.8743 2.0236 25 6 0.6923 1.7524 1.7492 26 1 -0.3634 0.1968 1.0086 27 1 -0.3633 0.7751 -0.6748 28 1 -0.3633 -0.9719 -0.3339 29 1 2.3529 -0.0460 -2.0201 30 1 1.3066 -1.4459 -1.6210 31 1 4.3621 0.3171 -0.6789 32 1 7.4750 1.5077 -0.5393 33 1 3.6717 -2.0337 1.3923 34 1 2.1887 -2.7714 0.7130 35 1 1.1004 0.6033 4.9173 36 1 -0.0862 2.7426 5.3442 37 1 -0.7388 4.1613 3.4430 38 1 0.9019 1.4936 0.7218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987816857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:59 Heat of formation + Delta-G solvation = 31.915517 kcal Electronic energy + Delta-G solvation = -21591.110610 eV Core-core repulsion = 18434.480458 eV Total energy + Delta-G solvation = -3156.630151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.17346 -40.32777 -38.91969 -36.18774 -33.99594 -33.52262 -32.71713 -32.03936 -30.03040 -27.22137 -25.93531 -25.30339 -24.42262 -23.27879 -21.57063 -20.65357 -19.32724 -18.74532 -17.99246 -17.56383 -16.89972 -16.50340 -16.39539 -15.73697 -15.59756 -15.24591 -14.87499 -14.71981 -14.39812 -14.12027 -14.01054 -13.58634 -13.33091 -13.23397 -12.89539 -12.75598 -12.66920 -12.30548 -12.17896 -12.06075 -11.66677 -11.57374 -11.27963 -11.03034 -10.99069 -10.46942 -10.12368 -9.73490 -9.01174 -7.97039 -5.24953 -0.38639 0.18580 1.45590 1.47176 1.54776 1.74613 1.92305 2.54052 2.80878 3.21294 3.37562 3.43807 3.63117 3.78509 3.83146 3.86095 3.95793 3.98513 4.08691 4.22786 4.39015 4.44335 4.59259 4.71212 4.71561 4.78267 4.94014 4.98027 5.01697 5.06315 5.15949 5.19187 5.31335 5.38836 5.52290 5.58418 6.25289 6.45810 6.82925 7.00648 7.32395 8.06820 8.28544 9.26102 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020606 B = 0.005217 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.528073 B = 5365.355366 C = 5712.614108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 H 0.080 0.920 4 C -0.119 4.119 5 C 0.158 3.842 6 H 0.086 0.914 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.078 0.922 10 C -0.073 4.073 11 N -0.968 5.968 12 Si 0.967 3.033 13 H -0.282 1.282 14 H -0.301 1.301 15 H -0.273 1.273 16 C 0.084 3.916 17 N -0.593 5.593 18 C 0.565 3.435 19 O -0.590 6.590 20 C -0.209 4.209 21 C -0.034 4.034 22 C -0.173 4.173 23 C 0.118 3.882 24 N -0.506 5.506 25 C 0.097 3.903 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.373 0.627 32 H 0.250 0.750 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.179 0.821 37 H 0.198 0.802 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.545 1.918 2.939 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 H 0.097 0.903 4 C -0.157 4.157 5 C 0.047 3.953 6 H 0.104 0.896 7 N -0.362 5.362 8 C -0.372 4.372 9 H 0.096 0.904 10 C -0.265 4.265 11 N -0.618 5.618 12 Si 0.797 3.203 13 H -0.209 1.209 14 H -0.228 1.228 15 H -0.199 1.199 16 C -0.041 4.041 17 N -0.323 5.323 18 C 0.355 3.645 19 O -0.472 6.472 20 C -0.214 4.214 21 C -0.061 4.061 22 C -0.192 4.192 23 C -0.038 4.038 24 N -0.215 5.215 25 C -0.059 4.059 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.205 0.795 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.158 0.842 36 H 0.196 0.804 37 H 0.215 0.785 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -18.464 1.963 2.770 18.773 hybrid contribution 1.792 -0.557 1.183 2.218 sum -16.672 1.406 3.953 17.192 Atomic orbital electron populations 1.22633 0.92000 1.05074 1.02858 1.22215 0.95722 0.96056 0.85251 0.90257 1.23052 0.96964 1.00241 0.95471 1.21668 0.86780 0.94860 0.91946 0.89639 1.42473 1.01122 1.05161 1.87479 1.19620 0.84730 0.92184 1.40645 0.90398 1.25494 1.01461 0.95781 1.03770 1.69801 1.29397 1.03147 1.59464 0.85226 0.80318 0.77202 0.77548 1.20863 1.22778 1.19853 1.23175 0.93927 0.88040 0.98947 1.48397 1.50671 1.28595 1.04655 1.18174 0.79214 0.85520 0.81561 1.90699 1.55128 1.55112 1.46285 1.20954 1.05998 0.97425 0.97021 1.21930 0.92295 0.96534 0.95333 1.22499 0.99645 0.94015 1.03056 1.23762 0.93283 0.99615 0.87186 1.67937 1.13562 1.15931 1.24111 1.25148 0.90341 0.88237 1.02164 0.92837 0.88169 0.89892 0.89066 0.86298 0.79454 0.94161 0.94376 0.89987 0.84166 0.80380 0.78507 0.78020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 7.82 71.98 0.56 -2.72 16 2 C 0.11 2.94 2.69 45.34 0.12 3.06 16 3 H 0.08 2.31 6.06 -2.38 -0.01 2.29 16 4 C -0.12 -3.02 6.04 31.78 0.19 -2.83 16 5 C 0.16 5.59 3.69 46.39 0.17 5.77 16 6 H 0.09 2.85 8.13 -2.39 -0.02 2.83 16 7 N -0.72 -34.68 5.27 -316.37 -1.67 -36.34 16 8 C -0.24 -13.04 9.98 84.04 0.84 -12.20 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 11 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 12 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 16 C 0.08 3.10 6.58 86.85 0.57 3.67 16 17 N -0.59 -20.62 3.07 -798.74 -2.45 -23.07 16 18 C 0.57 21.72 7.53 86.79 0.65 22.38 16 19 O -0.59 -26.90 16.73 -3.88 -0.06 -26.96 16 20 C -0.21 -6.60 5.34 -19.99 -0.11 -6.71 16 21 C -0.03 -0.92 9.72 22.73 0.22 -0.70 16 22 C -0.17 -3.23 10.10 22.33 0.23 -3.01 16 23 C 0.12 2.24 11.17 84.71 0.95 3.18 16 24 N -0.51 -12.79 10.35 -194.76 -2.01 -14.80 16 25 C 0.10 2.70 7.80 85.02 0.66 3.37 16 26 H 0.05 1.21 4.98 -2.39 -0.01 1.20 16 27 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.12 2.14 7.56 -2.39 -0.02 2.12 16 31 H 0.37 19.37 7.82 -92.71 -0.72 18.64 16 32 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.04 1.73 8.09 -2.39 -0.02 1.71 16 34 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.14 3.75 7.74 -2.91 -0.02 3.73 16 36 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 37 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.20 5.28 2.04 -5.85 -0.01 5.27 16 Total: -1.00 -74.76 310.01 2.00 -72.75 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.36 Total: 29.15 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.53 Total: 9.57 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -5.85 Total: -133.07 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.96 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.76 2.00 -72.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987816857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.666 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds