Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36451 * 124.84991 * 2 1 4 4 C 1.34483 * 108.85364 * 180.02562 * 3 2 1 5 5 C 1.46689 * 106.33233 * 0.02562 * 4 3 2 6 6 C 1.47269 * 126.93676 * 179.97438 * 5 4 3 7 7 O 1.21633 * 119.99379 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00377 * 0.03148 * 6 5 4 9 9 C 1.47867 * 126.94299 * 359.96924 * 8 6 5 10 10 C 1.56016 * 105.10528 * 182.02708 * 9 8 6 11 11 H 1.08999 * 116.25515 * 159.68342 * 10 9 8 12 12 C 1.57080 * 99.60803 * 32.80659 * 10 9 8 13 13 C 1.49286 * 126.94555 * 180.02562 * 8 6 5 14 14 H 1.08998 * 116.15635 * 16.68008 * 13 8 6 15 15 C 1.55993 * 104.31651 * 246.59158 * 13 8 6 16 16 N 1.47869 * 105.11721 * 289.10941 * 15 13 8 17 17 C 1.36938 * 126.94967 * 181.87325 * 16 15 13 18 18 H 1.07999 * 120.00325 * 179.68677 * 17 16 15 19 19 C 1.38815 * 119.99817 * 359.69323 * 17 16 15 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.34656 * 124.84822 * 180.34489 * 2 1 3 26 26 H 1.09000 * 109.47109 * 89.97313 * 1 2 3 27 27 H 1.09005 * 109.46840 * 209.96886 * 1 2 3 28 28 H 1.08997 * 109.47284 * 329.96991 * 1 2 3 29 29 H 1.08000 * 125.56876 * 0.02562 * 3 2 1 30 30 H 1.07999 * 126.83114 * 179.97438 * 4 3 2 31 31 H 1.09000 * 110.31648 * 63.12033 * 9 8 6 32 32 H 1.09005 * 110.40541 * 300.97485 * 9 8 6 33 33 H 1.09000 * 112.36973 * 64.27738 * 12 10 9 34 34 H 1.09006 * 112.36954 * 191.71579 * 12 10 9 35 35 H 1.09007 * 110.41864 * 170.14923 * 15 13 8 36 36 H 1.09001 * 110.20752 * 47.96781 * 15 13 8 37 37 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 38 38 H 1.07995 * 125.80749 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5461 -0.7177 -0.0016 6 6 4.7284 -1.5957 -0.0030 7 8 4.5885 -2.8040 -0.0042 8 7 5.9653 -1.0606 -0.0028 9 6 6.3117 0.3769 -0.0020 10 6 7.8704 0.4196 -0.0555 11 1 8.3156 1.3521 -0.4022 12 6 8.1385 -0.8670 -0.9159 13 6 7.2626 -1.7993 -0.0047 14 1 7.2162 -2.8511 -0.2871 15 6 7.8957 -1.4705 1.3826 16 7 8.2937 -0.0489 1.2976 17 6 8.9277 0.6874 2.2625 18 1 9.1716 1.7233 2.0782 19 6 9.2570 0.1025 3.4775 20 7 8.9549 -1.1584 3.7042 21 14 10.1225 1.1067 4.7935 22 1 9.2729 2.2645 5.1714 23 1 10.3603 0.2571 5.9881 24 1 11.4218 1.5968 4.2676 25 6 2.2345 -1.1051 -0.0067 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8897 0.5143 29 1 1.8828 2.1373 0.0004 30 1 4.3981 1.4017 -0.0011 31 1 5.9512 0.8525 0.9101 32 1 5.8894 0.8701 -0.8776 33 1 7.7390 -0.7809 -1.9264 34 1 9.1898 -1.1549 -0.9151 35 1 8.7691 -2.0980 1.5603 36 1 7.1603 -1.6109 2.1748 37 1 9.1847 -1.5671 4.5533 38 1 1.8767 -2.1240 -0.0124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032353895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = 64.261768 kcal Electronic energy + Delta-G solvation = -21550.820915 eV Core-core repulsion = 18395.593402 eV Total energy + Delta-G solvation = -3155.227513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18923 -41.24161 -39.00096 -35.44304 -33.92665 -32.91934 -30.77578 -30.30683 -29.97534 -27.40943 -26.96006 -25.45204 -23.35180 -21.84867 -21.16448 -20.84249 -20.01823 -18.93373 -17.97927 -17.38008 -17.03928 -16.42255 -16.12704 -15.90292 -15.54996 -15.06995 -14.64464 -14.54528 -14.12012 -13.73769 -13.50379 -13.37875 -13.16288 -13.06215 -12.99763 -12.91443 -12.71533 -12.62877 -12.24058 -12.13454 -12.04719 -11.78157 -11.50231 -10.97073 -10.67088 -9.63970 -9.44117 -9.18372 -8.87454 -7.81452 -5.17644 0.79888 1.47649 1.51412 1.56063 1.57378 1.91115 2.27715 2.50910 2.61980 3.35861 3.41641 3.72276 3.93214 3.98797 4.04939 4.07563 4.09278 4.23620 4.30067 4.49766 4.57360 4.67806 4.70754 4.75852 4.89187 4.96524 5.03569 5.06870 5.13999 5.16596 5.29615 5.46926 5.60356 5.66920 5.78725 6.10859 6.11958 6.40652 6.78320 7.04789 7.31924 7.73325 8.44886 9.29813 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.005074 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.176444 B = 5517.470009 C = 5973.949698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.442 5.442 3 C -0.007 4.007 4 C -0.195 4.195 5 C -0.264 4.264 6 C 0.591 3.409 7 O -0.612 6.612 8 N -0.605 5.605 9 C 0.098 3.902 10 C 0.133 3.867 11 H 0.138 0.862 12 C -0.128 4.128 13 C 0.099 3.901 14 H 0.111 0.889 15 C 0.190 3.810 16 N -0.616 5.616 17 C -0.231 4.231 18 H 0.097 0.903 19 C -0.073 4.073 20 N -0.960 5.960 21 Si 0.980 3.020 22 H -0.276 1.276 23 H -0.303 1.303 24 H -0.272 1.272 25 C 0.066 3.934 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.206 0.794 30 H 0.156 0.844 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.018 0.982 36 H -0.008 1.008 37 H 0.243 0.757 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.552 7.583 -11.721 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.117 5.117 3 C -0.134 4.134 4 C -0.218 4.218 5 C -0.274 4.274 6 C 0.384 3.616 7 O -0.498 6.498 8 N -0.336 5.336 9 C -0.026 4.026 10 C 0.026 3.974 11 H 0.156 0.844 12 C -0.167 4.167 13 C -0.005 4.005 14 H 0.129 0.871 15 C 0.064 3.936 16 N -0.341 5.341 17 C -0.360 4.360 18 H 0.115 0.885 19 C -0.265 4.265 20 N -0.609 5.609 21 Si 0.808 3.192 22 H -0.202 1.202 23 H -0.230 1.230 24 H -0.197 1.197 25 C -0.071 4.071 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.222 0.778 30 H 0.173 0.827 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.011 0.989 37 H 0.052 0.948 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.998 6.994 -11.469 20.890 hybrid contribution 0.682 -0.323 1.437 1.623 sum -15.316 6.671 -10.032 19.487 Atomic orbital electron populations 1.22460 0.73984 1.06259 1.05050 1.43927 1.08424 1.04913 1.54387 1.22317 0.89703 0.92662 1.08712 1.22683 0.98067 0.92377 1.08656 1.20377 0.92181 0.94661 1.20188 1.17640 0.82310 0.86635 0.74996 1.90661 1.86785 1.16580 1.55732 1.48990 1.04365 1.09031 1.71238 1.23354 0.97992 0.80350 1.00879 1.23683 0.91165 0.97728 0.84786 0.84423 1.24045 0.99424 0.95455 0.97794 1.24142 0.82070 0.97138 0.97126 0.87069 1.21466 0.94738 0.85870 0.91518 1.45491 1.67959 1.07716 1.12891 1.19542 1.28825 0.94544 0.93071 0.88482 1.25700 1.03024 0.97318 1.00485 1.70182 1.53541 1.13070 1.24096 0.85127 0.78759 0.77236 0.78059 1.20233 1.23028 1.19749 1.21822 0.89480 0.92812 1.02967 0.89004 0.88779 0.87369 0.77768 0.82653 0.92982 0.88573 0.88117 0.89888 0.96353 0.98931 0.94787 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 11.03 127.77 1.41 1.95 16 2 N -0.44 -8.71 3.09 -547.89 -1.69 -10.40 16 3 C -0.01 -0.14 11.34 83.11 0.94 0.80 16 4 C -0.19 -5.42 9.54 23.62 0.23 -5.20 16 5 C -0.26 -9.14 6.24 -19.04 -0.12 -9.25 16 6 C 0.59 25.35 7.89 86.62 0.68 26.03 16 7 O -0.61 -30.05 17.26 -4.14 -0.07 -30.12 16 8 N -0.61 -24.86 2.96 -772.42 -2.28 -27.14 16 9 C 0.10 3.46 4.39 87.16 0.38 3.84 16 10 C 0.13 4.87 5.53 46.92 0.26 5.12 16 11 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 12 C -0.13 -4.34 6.80 33.45 0.23 -4.12 16 13 C 0.10 4.19 5.23 46.91 0.25 4.44 16 14 H 0.11 4.69 8.06 -2.39 -0.02 4.68 16 15 C 0.19 10.10 4.77 87.15 0.42 10.52 16 16 N -0.62 -30.92 3.02 -648.52 -1.96 -32.88 16 17 C -0.23 -12.59 10.38 84.03 0.87 -11.72 16 18 H 0.10 4.83 7.83 -2.91 -0.02 4.80 16 19 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 20 N -0.96 -60.37 10.56 21.65 0.23 -60.14 16 21 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.07 1.84 11.12 83.92 0.93 2.77 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.68 8.13 -2.38 -0.02 0.66 16 28 H 0.11 0.49 8.13 -2.39 -0.02 0.47 16 29 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.16 4.12 4.88 -2.91 -0.01 4.11 16 31 H 0.05 2.07 7.21 -2.39 -0.02 2.05 16 32 H 0.10 2.65 6.91 -2.38 -0.02 2.63 16 33 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.02 1.08 7.48 -2.38 -0.02 1.06 16 36 H -0.01 -0.48 7.66 -2.39 -0.02 -0.49 16 37 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.18 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -81.17 310.79 4.26 -76.91 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.06 Total: 14.16 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 6.94 Total: 21.46 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -5.70 Total: -130.56 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.07 Total: -30.12 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -81.17 4.26 -76.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032353895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.172 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds