Wall clock time and date at job start Mon Mar 30 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34777 * 120.00237 * 2 1 4 4 O 1.21515 * 120.00087 * 185.38790 * 3 2 1 5 5 C 1.48174 * 119.99742 * 5.38188 * 3 2 1 6 6 C 1.39307 * 119.72030 * 186.81223 * 5 3 2 7 7 C 1.38594 * 119.05661 * 179.70871 * 6 5 3 8 8 C 1.38627 * 118.48487 * 0.55938 * 7 6 5 9 9 C 1.38560 * 119.35511 * 359.72285 * 8 7 6 10 10 N 1.31515 * 120.90180 * 359.97438 * 9 8 7 11 11 C 1.46501 * 120.00285 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64351 * 178.31286 * 11 2 1 13 13 C 1.55156 * 110.71832 * 54.97038 * 11 2 1 14 14 C 1.55137 * 101.48346 * 205.97310 * 13 11 2 15 15 N 1.47420 * 104.72261 * 37.29753 * 14 13 11 16 16 C 1.36939 * 125.64914 * 155.81579 * 15 14 13 17 17 H 1.07996 * 120.00217 * 189.60912 * 16 15 14 18 18 C 1.38818 * 119.99559 * 9.60967 * 16 15 14 19 19 N 1.31617 * 120.00263 * 10.00668 * 18 16 15 20 20 Si 1.86806 * 119.99609 * 190.01127 * 18 16 15 21 21 H 1.48493 * 109.46974 * 265.04636 * 20 18 16 22 22 H 1.48500 * 109.47097 * 25.04844 * 20 18 16 23 23 H 1.48501 * 109.46699 * 145.04577 * 20 18 16 24 24 C 1.47024 * 108.70412 * 335.55547 * 15 14 13 25 25 H 1.08998 * 109.47023 * 275.71657 * 1 2 3 26 26 H 1.09003 * 109.47310 * 35.71351 * 1 2 3 27 27 H 1.09000 * 109.47627 * 155.71338 * 1 2 3 28 28 H 1.08001 * 120.47484 * 359.97438 * 6 5 3 29 29 H 1.08001 * 120.75819 * 180.28355 * 7 6 5 30 30 H 1.08004 * 120.31844 * 179.70680 * 8 7 6 31 31 H 1.07994 * 119.54940 * 180.02562 * 9 8 7 32 32 H 1.09002 * 111.00835 * 324.21007 * 13 11 2 33 33 H 1.09001 * 111.00211 * 88.03053 * 13 11 2 34 34 H 1.08996 * 110.49596 * 278.45067 * 14 13 11 35 35 H 1.08997 * 110.33927 * 156.06281 * 14 13 11 36 36 H 0.96998 * 119.99725 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.88732 * 120.70420 * 24 15 14 38 38 H 1.09000 * 109.87796 * 241.86685 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3500 1.1695 -0.0988 5 6 1.4029 2.4476 0.1204 6 6 2.0862 3.6531 -0.0227 7 6 1.3832 4.8424 0.0864 8 6 0.0228 4.7848 0.3467 9 6 -0.5909 3.5500 0.4833 10 7 0.0992 2.4364 0.3689 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 -0.0305 13 6 1.7506 -2.1601 -1.1893 14 6 2.0691 -3.5788 -0.6484 15 7 1.7324 -3.5173 0.7855 16 6 1.4003 -4.5866 1.5739 17 1 1.0201 -4.4245 2.5716 18 6 1.5527 -5.8790 1.0906 19 7 2.1949 -6.0878 -0.0391 20 14 0.8459 -7.3218 2.0437 21 1 1.8983 -7.9022 2.9158 22 1 -0.2883 -6.8543 2.8806 23 1 0.3656 -8.3559 1.0921 24 6 1.8181 -2.1186 1.2305 25 1 -0.3633 0.1024 1.0225 26 1 -0.3634 0.8344 -0.5999 27 1 -0.3634 -0.9367 -0.4227 28 1 3.1480 3.6607 -0.2202 29 1 1.8845 5.7926 -0.0243 30 1 -0.5530 5.6935 0.4423 31 1 -1.6506 3.5015 0.6857 32 1 0.6848 -2.0435 -1.3861 33 1 2.3367 -1.9430 -2.0823 34 1 3.1262 -3.8091 -0.7803 35 1 1.4521 -4.3233 -1.1514 36 1 2.3016 -6.9909 -0.3765 37 1 0.8540 -1.7943 1.6221 38 1 2.5847 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032867695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:24 Heat of formation + Delta-G solvation = 52.978155 kcal Electronic energy + Delta-G solvation = -21085.274812 eV Core-core repulsion = 17929.558005 eV Total energy + Delta-G solvation = -3155.716807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82264 -39.14591 -37.25238 -34.84055 -32.89653 -32.05471 -31.43509 -29.15738 -27.57332 -26.56886 -24.96734 -23.96726 -23.63191 -20.95028 -20.23040 -19.03718 -17.49747 -17.12495 -16.85781 -16.09825 -15.82965 -15.29840 -14.86502 -14.62483 -14.11897 -13.85665 -13.68432 -13.53864 -12.94751 -12.84998 -12.33871 -12.26883 -11.93127 -11.79440 -11.55318 -10.89090 -10.83509 -10.78833 -10.46294 -10.20173 -10.09401 -10.05375 -9.80741 -9.65140 -9.44093 -9.31238 -8.56904 -8.26103 -6.78808 -5.72681 -3.05349 0.47305 0.95962 2.74739 3.10305 3.41566 3.47128 3.49433 3.70791 3.99559 4.50673 4.52839 4.55163 4.72295 4.81856 5.10795 5.43088 5.45610 5.46950 5.48901 5.62742 5.70354 5.75348 5.82769 5.87719 5.97491 6.17779 6.23870 6.38762 6.40848 6.58896 6.64499 6.74044 7.01178 7.49031 7.50840 7.58164 7.66457 7.79769 8.24961 8.29609 9.20863 9.82573 10.49893 11.40344 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040234 B = 0.003818 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.754177 B = 7331.677018 C = 7664.417449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.578 5.578 3 C 0.563 3.437 4 O -0.540 6.540 5 C 0.086 3.914 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.155 4.155 9 C 0.091 3.909 10 N -0.448 5.448 11 C 0.124 3.876 12 H 0.104 0.896 13 C -0.154 4.154 14 C 0.175 3.825 15 N -0.601 5.601 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.130 3.870 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.030 0.970 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 21.651 -1.869 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.308 5.308 3 C 0.349 3.651 4 O -0.418 6.418 5 C -0.052 4.052 6 C -0.134 4.134 7 C -0.110 4.110 8 C -0.175 4.175 9 C -0.068 4.068 10 N -0.160 5.160 11 C 0.021 3.979 12 H 0.122 0.878 13 C -0.193 4.193 14 C 0.050 3.950 15 N -0.328 5.328 16 C -0.357 4.357 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.216 1.216 24 C 0.003 3.997 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.512 20.561 -1.841 21.366 hybrid contribution -0.003 0.102 0.481 0.491 sum -5.515 20.663 -1.361 21.430 Atomic orbital electron populations 1.22054 0.78290 1.02421 1.02572 1.47753 1.07977 1.05292 1.69794 1.17932 0.86519 0.83022 0.77630 1.90766 1.13209 1.86744 1.51054 1.21282 0.90356 0.94178 0.99415 1.22149 1.02199 0.91752 0.97312 1.21626 0.94306 0.98590 0.96439 1.22368 0.95679 0.99805 0.99679 1.22950 1.00587 0.87573 0.95696 1.68170 1.06957 1.30894 1.10023 1.22319 0.97145 0.81223 0.97213 0.87765 1.23438 1.00794 0.98622 0.96473 1.21444 0.98897 0.90542 0.84139 1.44439 1.81338 1.00834 1.06183 1.19022 1.35602 0.83911 0.97143 0.90598 1.24824 1.00277 0.97242 0.98015 1.69956 1.44672 1.20052 1.21812 0.86116 0.78690 0.82330 0.78717 1.21636 1.20588 1.21614 1.21523 0.98097 0.86261 0.93785 0.92272 0.89755 0.91354 0.83469 0.84206 0.84433 0.82066 0.91473 0.91861 0.95237 0.90928 0.93682 0.95233 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 7.85 59.84 0.47 1.76 16 2 N -0.58 -9.83 2.88 -172.83 -0.50 -10.33 16 3 C 0.56 9.52 7.65 -12.18 -0.09 9.43 16 4 O -0.54 -10.52 15.73 5.35 0.08 -10.43 16 5 C 0.09 1.16 6.56 -83.01 -0.54 0.62 16 6 C -0.11 -1.25 9.63 -39.05 -0.38 -1.63 16 7 C -0.08 -0.65 10.17 -39.31 -0.40 -1.05 16 8 C -0.16 -1.07 10.11 -39.32 -0.40 -1.47 16 9 C 0.09 0.77 11.18 -17.57 -0.20 0.58 16 10 N -0.45 -5.37 6.19 -9.80 -0.06 -5.43 16 11 C 0.12 2.43 3.36 -66.09 -0.22 2.20 16 12 H 0.10 2.17 7.00 -51.93 -0.36 1.81 16 13 C -0.15 -3.02 6.60 -24.46 -0.16 -3.18 16 14 C 0.18 4.31 5.44 -2.41 -0.01 4.29 16 15 N -0.60 -15.75 3.39 -169.93 -0.58 -16.32 16 16 C -0.23 -6.48 10.24 -15.06 -0.15 -6.63 16 17 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 18 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 19 N -0.92 -27.16 10.68 55.49 0.59 -26.57 16 20 Si 0.91 22.21 29.57 -169.99 -5.03 17.18 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.13 2.89 6.88 -3.06 -0.02 2.87 16 25 H 0.06 0.85 7.92 -51.93 -0.41 0.44 16 26 H 0.08 1.10 5.82 -51.93 -0.30 0.80 16 27 H 0.07 1.03 6.13 -51.93 -0.32 0.71 16 28 H 0.15 1.59 7.66 -52.49 -0.40 1.18 16 29 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 31 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.07 1.24 6.15 -51.93 -0.32 0.93 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.07 1.95 6.92 -51.93 -0.36 1.59 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.03 0.64 7.07 -51.93 -0.37 0.27 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -33.01 310.18 -7.94 -40.95 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.92 Total: -1.23 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.20 Total: 7.50 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.54 Total: -58.65 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.01 -7.94 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032867695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.926 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds