Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34777 * 120.00237 * 2 1 4 4 O 1.21515 * 120.00087 * 185.38790 * 3 2 1 5 5 C 1.48174 * 119.99742 * 5.38188 * 3 2 1 6 6 C 1.39307 * 119.72030 * 186.81223 * 5 3 2 7 7 C 1.38594 * 119.05661 * 179.70871 * 6 5 3 8 8 C 1.38627 * 118.48487 * 0.55938 * 7 6 5 9 9 C 1.38560 * 119.35511 * 359.72285 * 8 7 6 10 10 N 1.31515 * 120.90180 * 359.97438 * 9 8 7 11 11 C 1.46501 * 120.00285 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64351 * 178.31286 * 11 2 1 13 13 C 1.55156 * 110.71832 * 54.97038 * 11 2 1 14 14 C 1.55137 * 101.48346 * 205.97310 * 13 11 2 15 15 N 1.47420 * 104.72261 * 37.29753 * 14 13 11 16 16 C 1.36939 * 125.64914 * 155.81579 * 15 14 13 17 17 H 1.07996 * 120.00217 * 189.60912 * 16 15 14 18 18 C 1.38818 * 119.99559 * 9.60967 * 16 15 14 19 19 N 1.31617 * 120.00263 * 10.00668 * 18 16 15 20 20 Si 1.86806 * 119.99609 * 190.01127 * 18 16 15 21 21 H 1.48493 * 109.46974 * 265.04636 * 20 18 16 22 22 H 1.48500 * 109.47097 * 25.04844 * 20 18 16 23 23 H 1.48501 * 109.46699 * 145.04577 * 20 18 16 24 24 C 1.47024 * 108.70412 * 335.55547 * 15 14 13 25 25 H 1.08998 * 109.47023 * 275.71657 * 1 2 3 26 26 H 1.09003 * 109.47310 * 35.71351 * 1 2 3 27 27 H 1.09000 * 109.47627 * 155.71338 * 1 2 3 28 28 H 1.08001 * 120.47484 * 359.97438 * 6 5 3 29 29 H 1.08001 * 120.75819 * 180.28355 * 7 6 5 30 30 H 1.08004 * 120.31844 * 179.70680 * 8 7 6 31 31 H 1.07994 * 119.54940 * 180.02562 * 9 8 7 32 32 H 1.09002 * 111.00835 * 324.21007 * 13 11 2 33 33 H 1.09001 * 111.00211 * 88.03053 * 13 11 2 34 34 H 1.08996 * 110.49596 * 278.45067 * 14 13 11 35 35 H 1.08997 * 110.33927 * 156.06281 * 14 13 11 36 36 H 0.96998 * 119.99725 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.88732 * 120.70420 * 24 15 14 38 38 H 1.09000 * 109.87796 * 241.86685 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3500 1.1695 -0.0988 5 6 1.4029 2.4476 0.1204 6 6 2.0862 3.6531 -0.0227 7 6 1.3832 4.8424 0.0864 8 6 0.0228 4.7848 0.3467 9 6 -0.5909 3.5500 0.4833 10 7 0.0992 2.4364 0.3689 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 -0.0305 13 6 1.7506 -2.1601 -1.1893 14 6 2.0691 -3.5788 -0.6484 15 7 1.7324 -3.5173 0.7855 16 6 1.4003 -4.5866 1.5739 17 1 1.0201 -4.4245 2.5716 18 6 1.5527 -5.8790 1.0906 19 7 2.1949 -6.0878 -0.0391 20 14 0.8459 -7.3218 2.0437 21 1 1.8983 -7.9022 2.9158 22 1 -0.2883 -6.8543 2.8806 23 1 0.3656 -8.3559 1.0921 24 6 1.8181 -2.1186 1.2305 25 1 -0.3633 0.1024 1.0225 26 1 -0.3634 0.8344 -0.5999 27 1 -0.3634 -0.9367 -0.4227 28 1 3.1480 3.6607 -0.2202 29 1 1.8845 5.7926 -0.0243 30 1 -0.5530 5.6935 0.4423 31 1 -1.6506 3.5015 0.6857 32 1 0.6848 -2.0435 -1.3861 33 1 2.3367 -1.9430 -2.0823 34 1 3.1262 -3.8091 -0.7803 35 1 1.4521 -4.3233 -1.1514 36 1 2.3016 -6.9909 -0.3765 37 1 0.8540 -1.7943 1.6221 38 1 2.5847 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032867695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = 31.884254 kcal Electronic energy + Delta-G solvation = -21086.189512 eV Core-core repulsion = 17929.558005 eV Total energy + Delta-G solvation = -3156.631507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82100 -40.32817 -38.89360 -36.37713 -34.26322 -33.35064 -32.36831 -31.04731 -29.27983 -27.84316 -26.68700 -25.22178 -24.38414 -22.26361 -22.16563 -20.47609 -18.93571 -18.66663 -18.06131 -17.09579 -16.81903 -16.69900 -16.47842 -15.93382 -15.73203 -15.31582 -14.65501 -14.54030 -14.41436 -14.19243 -13.95348 -13.78086 -13.51745 -13.07972 -12.85207 -12.73340 -12.69619 -12.44089 -12.20612 -12.00986 -11.84713 -11.55864 -11.35126 -10.89037 -10.71836 -10.23228 -10.18878 -9.65675 -8.91678 -7.89718 -5.26056 -0.33852 0.30130 1.46927 1.48551 1.58611 1.65776 1.83201 2.49659 2.86852 3.06681 3.29810 3.62813 3.71727 3.83622 3.92132 4.01239 4.09055 4.13237 4.17913 4.33810 4.48153 4.51030 4.65096 4.78722 4.82317 4.84360 4.97901 5.00836 5.10046 5.17852 5.20414 5.40901 5.51233 5.53358 5.66048 5.71027 6.16273 6.30230 6.73550 7.03333 7.04870 7.70778 8.37700 9.22260 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040234 B = 0.003818 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.754177 B = 7331.677018 C = 7664.417449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.582 5.582 3 C 0.558 3.442 4 O -0.578 6.578 5 C 0.053 3.947 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.133 4.133 9 C 0.085 3.915 10 N -0.469 5.469 11 C 0.138 3.862 12 H 0.087 0.913 13 C -0.133 4.133 14 C 0.182 3.818 15 N -0.620 5.620 16 C -0.248 4.248 17 H 0.079 0.921 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.288 1.288 22 H -0.267 1.267 23 H -0.290 1.290 24 C 0.133 3.867 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.139 0.861 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.194 0.806 32 H 0.083 0.917 33 H 0.080 0.920 34 H -0.001 1.001 35 H 0.046 0.954 36 H 0.250 0.750 37 H 0.041 0.959 38 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 24.455 -1.448 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.311 5.311 3 C 0.347 3.653 4 O -0.458 6.458 5 C -0.083 4.083 6 C -0.143 4.143 7 C -0.104 4.104 8 C -0.152 4.152 9 C -0.074 4.074 10 N -0.181 5.181 11 C 0.034 3.966 12 H 0.106 0.894 13 C -0.173 4.173 14 C 0.056 3.944 15 N -0.347 5.347 16 C -0.377 4.377 17 H 0.097 0.903 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.215 1.215 22 H -0.192 1.192 23 H -0.216 1.216 24 C 0.007 3.993 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.192 0.808 30 H 0.198 0.802 31 H 0.211 0.789 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.017 0.983 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.796 23.399 -1.412 24.704 hybrid contribution 0.664 -0.599 0.391 0.975 sum -7.132 22.800 -1.021 23.911 Atomic orbital electron populations 1.22132 0.76573 1.02803 1.03024 1.47756 1.08845 1.04352 1.70183 1.18571 0.86377 0.84086 0.76284 1.90727 1.14940 1.87471 1.52643 1.20781 0.91367 0.92805 1.03341 1.22231 1.02133 0.92324 0.97660 1.22040 0.94852 0.98526 0.95006 1.22865 0.95361 1.00761 0.96226 1.23585 1.01833 0.87326 0.94688 1.67999 1.06266 1.33025 1.10854 1.21884 0.96634 0.82377 0.95745 0.89443 1.23240 1.02090 0.95077 0.96844 1.21216 0.96425 0.92883 0.83835 1.44714 1.81211 1.01959 1.06814 1.19401 1.35665 0.84972 0.97659 0.90271 1.25704 1.00726 0.99861 0.99156 1.70154 1.45745 1.20307 1.23353 0.85026 0.78111 0.78574 0.77344 1.21460 1.19154 1.21619 1.21564 0.98100 0.84992 0.94690 0.92101 0.87891 0.91981 0.84326 0.80820 0.80184 0.78948 0.89840 0.90105 0.98327 0.93604 0.94069 0.94140 0.97042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.69 7.85 127.77 1.00 3.69 16 2 N -0.58 -19.86 2.88 -819.00 -2.36 -22.22 16 3 C 0.56 19.17 7.65 86.88 0.66 19.84 16 4 O -0.58 -23.37 15.73 -3.76 -0.06 -23.43 16 5 C 0.05 1.40 6.56 41.91 0.27 1.67 16 6 C -0.12 -2.53 9.63 22.61 0.22 -2.32 16 7 C -0.08 -0.93 10.17 22.45 0.23 -0.70 16 8 C -0.13 -1.17 10.11 22.44 0.23 -0.94 16 9 C 0.09 1.12 11.18 84.82 0.95 2.06 16 10 N -0.47 -10.23 6.19 -184.92 -1.14 -11.38 16 11 C 0.14 5.53 3.36 46.18 0.15 5.68 16 12 H 0.09 3.82 7.00 -2.39 -0.02 3.80 16 13 C -0.13 -5.29 6.60 32.07 0.21 -5.08 16 14 C 0.18 9.31 5.44 86.94 0.47 9.79 16 15 N -0.62 -33.47 3.39 -691.54 -2.35 -35.81 16 16 C -0.25 -14.35 10.24 84.03 0.86 -13.49 16 17 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 18 C -0.06 -3.52 5.40 84.86 0.46 -3.06 16 19 N -0.95 -57.78 10.68 21.65 0.23 -57.55 16 20 Si 0.98 46.18 29.57 68.60 2.03 48.21 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 C 0.13 6.05 6.88 86.73 0.60 6.64 16 25 H 0.06 1.68 7.92 -2.39 -0.02 1.66 16 26 H 0.10 2.52 5.82 -2.39 -0.01 2.50 16 27 H 0.06 1.80 6.13 -2.39 -0.01 1.78 16 28 H 0.14 3.00 7.66 -2.91 -0.02 2.98 16 29 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 30 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 31 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.08 3.05 6.15 -2.39 -0.01 3.03 16 33 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.00 -0.07 8.08 -2.39 -0.02 -0.09 16 35 H 0.05 2.57 6.92 -2.39 -0.02 2.55 16 36 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.04 1.76 7.07 -2.39 -0.02 1.74 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -74.98 310.18 3.73 -71.25 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.06 Total: 7.12 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 6.32 Total: 23.80 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -5.62 Total: -126.95 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.98 3.73 -71.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032867695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.132 kcal (2) G-P(sol) polarization free energy of solvation -74.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds