Wall clock time and date at job start Mon Mar 30 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34769 * 120.00440 * 2 1 4 4 O 1.21508 * 120.00273 * 185.63810 * 3 2 1 5 5 C 1.48178 * 119.99725 * 5.63890 * 3 2 1 6 6 C 1.39303 * 119.71985 * 186.38034 * 5 3 2 7 7 C 1.38589 * 119.05941 * 179.71031 * 6 5 3 8 8 C 1.38630 * 118.48394 * 0.55091 * 7 6 5 9 9 C 1.38563 * 119.35418 * 359.72676 * 8 7 6 10 10 N 1.31522 * 120.89808 * 359.97438 * 9 8 7 11 11 C 1.46502 * 119.99501 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.63775 * 176.85735 * 11 2 1 13 13 C 1.55157 * 110.71912 * 299.99513 * 11 2 1 14 14 C 1.54914 * 101.58185 * 153.86802 * 13 11 2 15 15 N 1.47420 * 104.92930 * 322.93651 * 14 13 11 16 16 C 1.36930 * 125.64787 * 204.15700 * 15 14 13 17 17 H 1.08004 * 119.99724 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00344 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99369 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00044 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47148 * 89.99761 * 20 18 16 22 22 H 1.48497 * 109.46869 * 209.99718 * 20 18 16 23 23 H 1.48498 * 109.47283 * 329.99517 * 20 18 16 24 24 C 1.47289 * 108.55796 * 24.15412 * 15 14 13 25 25 H 1.09006 * 109.46561 * 275.47400 * 1 2 3 26 26 H 1.08998 * 109.47037 * 35.46623 * 1 2 3 27 27 H 1.08994 * 109.47427 * 155.47471 * 1 2 3 28 28 H 1.08006 * 120.47516 * 359.97140 * 6 5 3 29 29 H 1.07999 * 120.76258 * 180.28103 * 7 6 5 30 30 H 1.08010 * 120.32374 * 179.71094 * 8 7 6 31 31 H 1.07992 * 119.54788 * 180.02562 * 9 8 7 32 32 H 1.08997 * 111.00622 * 35.79283 * 13 11 2 33 33 H 1.09002 * 111.03547 * 271.95400 * 13 11 2 34 34 H 1.09007 * 110.36533 * 81.83209 * 14 13 11 35 35 H 1.09004 * 110.36772 * 204.03933 * 14 13 11 36 36 H 0.97008 * 119.99503 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.85619 * 239.50288 * 24 15 14 38 38 H 1.09002 * 110.00474 * 118.43182 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3497 1.1696 -0.1034 5 6 1.4035 2.4473 0.1261 6 6 2.0880 3.6531 -0.0080 7 6 1.3855 4.8422 0.1065 8 6 0.0243 4.7840 0.3627 9 6 -0.5906 3.5489 0.4902 10 7 0.0993 2.4354 0.3709 11 6 2.1974 -1.2688 -0.0006 12 1 3.2717 -1.0923 -0.0564 13 6 1.8435 -2.1075 1.2559 14 6 2.1170 -3.5479 0.7556 15 7 1.6770 -3.5511 -0.6514 16 6 1.2872 -4.6541 -1.3631 17 1 0.9813 -4.5513 -2.3938 18 6 1.2853 -5.9044 -0.7599 19 7 1.6586 -6.0296 0.4960 20 14 0.7542 -7.4091 -1.7310 21 1 1.9363 -8.0087 -2.4005 22 1 0.1492 -8.4044 -0.8100 23 1 -0.2451 -7.0104 -2.7546 24 6 1.7272 -2.1703 -1.1615 25 1 -0.3633 0.0980 1.0231 26 1 -0.3633 0.8370 -0.5963 27 1 -0.3634 -0.9349 -0.4265 28 1 3.1504 3.6612 -0.2026 29 1 1.8878 5.7927 0.0028 30 1 -0.5512 5.6925 0.4622 31 1 -1.6508 3.4998 0.6894 32 1 0.7957 -1.9807 1.5279 33 1 2.4954 -1.8539 2.0919 34 1 3.1808 -3.7766 0.8210 35 1 1.5388 -4.2671 1.3356 36 1 1.6575 -6.9033 0.9174 37 1 0.7356 -1.8615 -1.4924 38 1 2.4317 -2.1045 -1.9907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032867698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:27 Heat of formation + Delta-G solvation = 55.350341 kcal Electronic energy + Delta-G solvation = -21091.846573 eV Core-core repulsion = 17936.232632 eV Total energy + Delta-G solvation = -3155.613941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81797 -39.13688 -37.23767 -34.83292 -32.89845 -32.05537 -31.42769 -29.18573 -27.45596 -26.62158 -24.97478 -23.95505 -23.63591 -20.94527 -20.17058 -19.02457 -17.48741 -17.14831 -16.88409 -16.08623 -15.79309 -15.37449 -14.85719 -14.63635 -14.04538 -13.77949 -13.74138 -13.55691 -12.96246 -12.80573 -12.40265 -12.19646 -11.93290 -11.65915 -11.49516 -11.00353 -10.81860 -10.79042 -10.46785 -10.20518 -10.10147 -10.03990 -9.77925 -9.54870 -9.43554 -9.28018 -8.64077 -8.25111 -6.82577 -5.63578 -3.05880 0.47685 0.96270 2.75457 3.10966 3.41796 3.46563 3.48538 3.71420 4.00023 4.50109 4.53046 4.55066 4.72577 4.82201 5.11283 5.44161 5.46777 5.47516 5.54835 5.62477 5.71081 5.76740 5.83634 5.90031 5.99017 6.18345 6.32831 6.36112 6.44003 6.58731 6.63898 6.75609 7.02340 7.49857 7.52959 7.62981 7.66619 7.86494 8.27602 8.37103 9.22832 9.83223 10.48218 11.40049 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042194 B = 0.003764 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.435149 B = 7437.120150 C = 7653.029487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.578 5.578 3 C 0.563 3.437 4 O -0.541 6.541 5 C 0.086 3.914 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.155 4.155 9 C 0.091 3.909 10 N -0.448 5.448 11 C 0.123 3.877 12 H 0.103 0.897 13 C -0.150 4.150 14 C 0.153 3.847 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.916 3.084 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.129 3.871 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.015 0.985 35 H 0.110 0.890 36 H 0.252 0.748 37 H 0.031 0.969 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.588 21.464 1.326 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.307 5.307 3 C 0.349 3.651 4 O -0.419 6.419 5 C -0.052 4.052 6 C -0.134 4.134 7 C -0.110 4.110 8 C -0.175 4.175 9 C -0.068 4.068 10 N -0.160 5.160 11 C 0.020 3.980 12 H 0.121 0.879 13 C -0.190 4.190 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.002 3.998 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.165 0.835 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.386 20.369 1.371 20.881 hybrid contribution 0.091 0.152 -0.553 0.580 sum -4.295 20.521 0.818 20.982 Atomic orbital electron populations 1.22089 0.78261 1.02771 1.02440 1.47755 1.08002 1.05279 1.69703 1.17929 0.86522 0.83014 0.77660 1.90761 1.13262 1.86734 1.51117 1.21281 0.90343 0.94177 0.99417 1.22147 1.02216 0.91752 0.97310 1.21624 0.94313 0.98592 0.96435 1.22370 0.95666 0.99800 0.99703 1.22955 1.00593 0.87581 0.95691 1.68177 1.06963 1.30895 1.09994 1.22332 0.97030 0.81256 0.97388 0.87865 1.23377 1.00936 0.98842 0.95826 1.21943 0.98090 0.91334 0.85825 1.44488 1.77839 1.01069 1.09498 1.19072 1.36666 0.84643 0.94590 0.90454 1.24792 1.01811 0.97521 0.96528 1.69791 1.53946 1.22374 1.10952 0.86052 0.78120 0.82596 0.78600 1.21633 1.21657 1.20701 1.21577 0.98029 0.86234 0.93980 0.92391 0.89706 0.91026 0.83472 0.84207 0.84433 0.82067 0.91624 0.92122 0.96745 0.87248 0.93705 0.95079 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 7.87 59.85 0.47 1.76 16 2 N -0.58 -9.93 2.89 -172.82 -0.50 -10.42 16 3 C 0.56 9.57 7.65 -12.18 -0.09 9.48 16 4 O -0.54 -10.57 15.72 5.36 0.08 -10.48 16 5 C 0.09 1.17 6.56 -83.01 -0.54 0.63 16 6 C -0.11 -1.26 9.63 -39.06 -0.38 -1.63 16 7 C -0.08 -0.66 10.17 -39.31 -0.40 -1.06 16 8 C -0.16 -1.08 10.11 -39.32 -0.40 -1.48 16 9 C 0.09 0.78 11.18 -17.56 -0.20 0.58 16 10 N -0.45 -5.40 6.18 -9.80 -0.06 -5.46 16 11 C 0.12 2.42 3.36 -66.09 -0.22 2.20 16 12 H 0.10 2.15 7.00 -51.93 -0.36 1.79 16 13 C -0.15 -3.03 6.66 -24.58 -0.16 -3.19 16 14 C 0.15 3.81 5.88 -2.53 -0.01 3.80 16 15 N -0.60 -15.77 3.40 -169.85 -0.58 -16.35 16 16 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 17 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -27.01 10.09 55.49 0.56 -26.45 16 20 Si 0.92 22.19 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.13 2.83 6.78 -2.92 -0.02 2.81 16 25 H 0.06 0.82 7.99 -51.93 -0.41 0.40 16 26 H 0.08 1.14 5.81 -51.93 -0.30 0.84 16 27 H 0.07 1.14 6.17 -51.93 -0.32 0.82 16 28 H 0.15 1.60 7.66 -52.48 -0.40 1.19 16 29 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 31 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.07 1.28 7.34 -51.93 -0.38 0.90 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 3.01 5.87 -51.93 -0.30 2.71 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.03 0.67 6.01 -51.93 -0.31 0.35 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -32.61 309.36 -7.94 -40.56 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.88 Total: -0.30 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.21 Total: 7.08 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.58 Total: -58.68 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.61 -7.94 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032867698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.906 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds