Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34769 * 120.00440 * 2 1 4 4 O 1.21508 * 120.00273 * 185.63810 * 3 2 1 5 5 C 1.48178 * 119.99725 * 5.63890 * 3 2 1 6 6 C 1.39303 * 119.71985 * 186.38034 * 5 3 2 7 7 C 1.38589 * 119.05941 * 179.71031 * 6 5 3 8 8 C 1.38630 * 118.48394 * 0.55091 * 7 6 5 9 9 C 1.38563 * 119.35418 * 359.72676 * 8 7 6 10 10 N 1.31522 * 120.89808 * 359.97438 * 9 8 7 11 11 C 1.46502 * 119.99501 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.63775 * 176.85735 * 11 2 1 13 13 C 1.55157 * 110.71912 * 299.99513 * 11 2 1 14 14 C 1.54914 * 101.58185 * 153.86802 * 13 11 2 15 15 N 1.47420 * 104.92930 * 322.93651 * 14 13 11 16 16 C 1.36930 * 125.64787 * 204.15700 * 15 14 13 17 17 H 1.08004 * 119.99724 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00344 * 0.02562 * 16 15 14 19 19 N 1.31617 * 119.99369 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00044 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47148 * 89.99761 * 20 18 16 22 22 H 1.48497 * 109.46869 * 209.99718 * 20 18 16 23 23 H 1.48498 * 109.47283 * 329.99517 * 20 18 16 24 24 C 1.47289 * 108.55796 * 24.15412 * 15 14 13 25 25 H 1.09006 * 109.46561 * 275.47400 * 1 2 3 26 26 H 1.08998 * 109.47037 * 35.46623 * 1 2 3 27 27 H 1.08994 * 109.47427 * 155.47471 * 1 2 3 28 28 H 1.08006 * 120.47516 * 359.97140 * 6 5 3 29 29 H 1.07999 * 120.76258 * 180.28103 * 7 6 5 30 30 H 1.08010 * 120.32374 * 179.71094 * 8 7 6 31 31 H 1.07992 * 119.54788 * 180.02562 * 9 8 7 32 32 H 1.08997 * 111.00622 * 35.79283 * 13 11 2 33 33 H 1.09002 * 111.03547 * 271.95400 * 13 11 2 34 34 H 1.09007 * 110.36533 * 81.83209 * 14 13 11 35 35 H 1.09004 * 110.36772 * 204.03933 * 14 13 11 36 36 H 0.97008 * 119.99503 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.85619 * 239.50288 * 24 15 14 38 38 H 1.09002 * 110.00474 * 118.43182 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3497 1.1696 -0.1034 5 6 1.4035 2.4473 0.1261 6 6 2.0880 3.6531 -0.0080 7 6 1.3855 4.8422 0.1065 8 6 0.0243 4.7840 0.3627 9 6 -0.5906 3.5489 0.4902 10 7 0.0993 2.4354 0.3709 11 6 2.1974 -1.2688 -0.0006 12 1 3.2717 -1.0923 -0.0564 13 6 1.8435 -2.1075 1.2559 14 6 2.1170 -3.5479 0.7556 15 7 1.6770 -3.5511 -0.6514 16 6 1.2872 -4.6541 -1.3631 17 1 0.9813 -4.5513 -2.3938 18 6 1.2853 -5.9044 -0.7599 19 7 1.6586 -6.0296 0.4960 20 14 0.7542 -7.4091 -1.7310 21 1 1.9363 -8.0087 -2.4005 22 1 0.1492 -8.4044 -0.8100 23 1 -0.2451 -7.0104 -2.7546 24 6 1.7272 -2.1703 -1.1615 25 1 -0.3633 0.0980 1.0231 26 1 -0.3633 0.8370 -0.5963 27 1 -0.3634 -0.9349 -0.4265 28 1 3.1504 3.6612 -0.2026 29 1 1.8878 5.7927 0.0028 30 1 -0.5512 5.6925 0.4622 31 1 -1.6508 3.4998 0.6894 32 1 0.7957 -1.9807 1.5279 33 1 2.4954 -1.8539 2.0919 34 1 3.1808 -3.7766 0.8210 35 1 1.5388 -4.2671 1.3356 36 1 1.6575 -6.9033 0.9174 37 1 0.7356 -1.8615 -1.4924 38 1 2.4317 -2.1045 -1.9907 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032867698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = 34.745310 kcal Electronic energy + Delta-G solvation = -21092.740075 eV Core-core repulsion = 17936.232632 eV Total energy + Delta-G solvation = -3156.507442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82255 -40.32486 -38.88484 -36.37815 -34.26105 -33.34440 -32.36341 -31.08119 -29.18451 -27.91181 -26.67101 -25.22369 -24.38558 -22.23639 -22.13821 -20.47124 -18.98426 -18.66918 -18.06158 -17.09466 -16.78446 -16.69245 -16.57496 -15.92300 -15.67924 -15.26492 -14.69829 -14.60385 -14.32461 -14.17390 -13.96713 -13.76461 -13.38118 -13.05568 -12.96421 -12.72064 -12.69470 -12.44124 -12.23099 -12.01260 -11.83392 -11.43747 -11.35185 -10.89177 -10.77018 -10.23881 -10.18677 -9.65767 -8.93646 -7.78432 -5.24693 -0.33937 0.30030 1.47612 1.50080 1.58762 1.66246 1.82365 2.49907 2.87071 3.06248 3.31737 3.62764 3.73958 3.84694 3.92582 4.01135 4.08969 4.13212 4.18381 4.32999 4.48371 4.59207 4.63987 4.75567 4.82484 4.84630 4.93628 5.02540 5.10224 5.16997 5.20213 5.43712 5.52040 5.55023 5.70923 5.74912 6.26413 6.30080 6.73372 7.03403 7.07527 7.72677 8.37531 9.23496 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042194 B = 0.003764 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.435149 B = 7437.120150 C = 7653.029487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.582 5.582 3 C 0.558 3.442 4 O -0.578 6.578 5 C 0.053 3.947 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.133 4.133 9 C 0.085 3.915 10 N -0.469 5.469 11 C 0.137 3.863 12 H 0.088 0.912 13 C -0.131 4.131 14 C 0.158 3.842 15 N -0.622 5.622 16 C -0.242 4.242 17 H 0.082 0.918 18 C -0.065 4.065 19 N -0.948 5.948 20 Si 0.985 3.015 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.130 3.870 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.139 0.861 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.194 0.806 32 H 0.075 0.925 33 H 0.076 0.924 34 H -0.012 1.012 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.043 0.957 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 24.270 1.134 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.311 5.311 3 C 0.347 3.653 4 O -0.458 6.458 5 C -0.083 4.083 6 C -0.144 4.144 7 C -0.104 4.104 8 C -0.152 4.152 9 C -0.074 4.074 10 N -0.181 5.181 11 C 0.033 3.967 12 H 0.106 0.894 13 C -0.170 4.170 14 C 0.033 3.967 15 N -0.348 5.348 16 C -0.370 4.370 17 H 0.100 0.900 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.813 3.187 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.192 1.192 24 C 0.004 3.996 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.192 0.808 30 H 0.198 0.802 31 H 0.211 0.789 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.006 0.994 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.407 23.209 1.168 24.105 hybrid contribution 0.671 -0.553 -0.489 0.997 sum -5.737 22.656 0.679 23.381 Atomic orbital electron populations 1.22140 0.76656 1.02608 1.03198 1.47760 1.08811 1.04406 1.70148 1.18563 0.86385 0.84043 0.76309 1.90722 1.14964 1.87447 1.52678 1.20777 0.91353 0.92794 1.03366 1.22228 1.02147 0.92319 0.97660 1.22039 0.94863 0.98529 0.94989 1.22869 0.95350 1.00757 0.96235 1.23590 1.01843 0.87332 0.94678 1.67999 1.06262 1.33034 1.10832 1.21904 0.96538 0.82317 0.95959 0.89358 1.23161 1.01848 0.95659 0.96367 1.21711 0.95859 0.93663 0.85512 1.44750 1.77754 1.02233 1.10090 1.19449 1.36775 0.85705 0.95113 0.90049 1.25669 1.02101 1.00346 0.97596 1.70030 1.54756 1.22647 1.12344 0.84986 0.77759 0.78630 0.77359 1.21538 1.21685 1.19243 1.21638 0.98409 0.84959 0.94592 0.91513 0.88094 0.92419 0.84328 0.80812 0.80175 0.78945 0.90627 0.90525 0.99409 0.89927 0.94142 0.93895 0.96447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.75 7.87 127.77 1.01 3.75 16 2 N -0.58 -20.10 2.89 -818.98 -2.36 -22.46 16 3 C 0.56 19.27 7.65 86.89 0.66 19.93 16 4 O -0.58 -23.39 15.72 -3.74 -0.06 -23.45 16 5 C 0.05 1.41 6.56 41.91 0.27 1.68 16 6 C -0.12 -2.55 9.63 22.61 0.22 -2.33 16 7 C -0.08 -0.93 10.17 22.45 0.23 -0.70 16 8 C -0.13 -1.18 10.11 22.44 0.23 -0.95 16 9 C 0.08 1.12 11.18 84.82 0.95 2.07 16 10 N -0.47 -10.28 6.18 -184.92 -1.14 -11.43 16 11 C 0.14 5.54 3.36 46.18 0.16 5.69 16 12 H 0.09 3.84 7.00 -2.38 -0.02 3.83 16 13 C -0.13 -5.36 6.66 31.99 0.21 -5.15 16 14 C 0.16 8.17 5.88 86.86 0.51 8.68 16 15 N -0.62 -33.50 3.40 -691.29 -2.35 -35.85 16 16 C -0.24 -13.89 10.28 84.04 0.86 -13.03 16 17 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 18 C -0.06 -3.71 5.49 84.86 0.47 -3.24 16 19 N -0.95 -57.13 10.09 21.65 0.22 -56.91 16 20 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.13 5.87 6.78 86.68 0.59 6.46 16 25 H 0.07 1.80 7.99 -2.38 -0.02 1.78 16 26 H 0.10 2.59 5.81 -2.39 -0.01 2.58 16 27 H 0.06 1.80 6.17 -2.39 -0.01 1.79 16 28 H 0.14 3.01 7.66 -2.91 -0.02 2.99 16 29 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 30 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 31 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.08 2.94 7.34 -2.39 -0.02 2.92 16 33 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 34 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 35 H 0.08 4.75 5.87 -2.38 -0.01 4.73 16 36 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 37 H 0.04 1.85 6.01 -2.39 -0.01 1.83 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.77 309.36 3.76 -70.01 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.07 Total: 9.11 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 6.36 Total: 22.87 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.64 Total: -126.65 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.45 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.77 3.76 -70.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032867698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.760 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds