Wall clock time and date at job start Mon Mar 30 2020 01:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.64226 * 2 1 4 4 C 1.54322 * 110.71964 * 123.14491 * 2 1 3 5 5 N 1.47026 * 107.26952 * 140.73380 * 4 2 1 6 6 C 1.34779 * 125.64586 * 181.01884 * 5 4 2 7 7 O 1.21553 * 120.00075 * 5.92527 * 6 5 4 8 8 C 1.47838 * 119.99668 * 185.64704 * 6 5 4 9 9 C 1.40029 * 120.56235 * 24.37309 * 8 6 5 10 10 C 1.38354 * 118.28786 * 179.97438 * 9 8 6 11 11 C 1.38351 * 119.30673 * 359.97438 * 10 9 8 12 12 N 1.31925 * 121.07886 * 0.02562 * 11 10 9 13 13 C 1.31699 * 121.87716 * 359.72337 * 12 11 10 14 14 C 1.47423 * 108.70314 * 1.28810 * 5 4 2 15 15 C 1.55124 * 104.72428 * 335.55108 * 14 5 4 16 16 H 1.09001 * 111.22524 * 279.18107 * 15 14 5 17 17 N 1.46501 * 110.91143 * 155.27810 * 15 14 5 18 18 C 1.36933 * 119.99968 * 92.97184 * 17 15 14 19 19 H 1.08004 * 120.00070 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99885 * 180.02562 * 18 17 15 21 21 N 1.31611 * 119.99976 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99873 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46958 * 90.00100 * 22 20 18 24 24 H 1.48499 * 109.47051 * 210.00022 * 22 20 18 25 25 H 1.48495 * 109.47154 * 330.00264 * 22 20 18 26 26 H 1.09001 * 109.47100 * 298.30945 * 1 2 3 27 27 H 1.09006 * 109.47054 * 58.30986 * 1 2 3 28 28 H 1.08998 * 109.47080 * 178.31090 * 1 2 3 29 29 H 1.08989 * 109.88187 * 21.31451 * 4 2 1 30 30 H 1.09005 * 110.00769 * 260.21758 * 4 2 1 31 31 H 1.08000 * 120.85307 * 359.94835 * 9 8 6 32 32 H 1.07999 * 120.34504 * 180.02562 * 10 9 8 33 33 H 1.07993 * 119.46410 * 179.97438 * 11 10 9 34 34 H 1.08010 * 119.71146 * 180.28969 * 13 12 11 35 35 H 1.09000 * 110.36806 * 94.48489 * 14 5 4 36 36 H 1.09003 * 110.36156 * 216.80922 * 14 5 4 37 37 H 0.97003 * 119.99584 * 272.97926 * 17 15 14 38 38 H 0.97000 * 119.99970 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2471 -1.5462 0.7425 6 6 3.9958 -2.3768 1.4950 7 8 3.6596 -2.6337 2.6345 8 6 5.2225 -2.9801 0.9322 9 6 5.9007 -2.3604 -0.1245 10 6 7.0441 -2.9658 -0.6146 11 6 7.4772 -4.1524 -0.0501 12 7 6.8177 -4.7136 0.9451 13 6 5.7274 -4.1737 1.4491 14 6 3.4707 -1.2412 -0.6824 15 6 2.0829 -0.7948 -1.2125 16 1 1.4511 -1.6542 -1.4372 17 7 2.2250 0.0700 -2.3865 18 6 2.1937 -0.4718 -3.6437 19 1 2.0637 -1.5365 -3.7699 20 6 2.3289 0.3475 -4.7561 21 7 2.4878 1.6449 -4.6024 22 14 2.2854 -0.3915 -6.4712 23 1 0.8854 -0.4125 -6.9658 24 1 3.1209 0.4286 -7.3849 25 1 2.8154 -1.7779 -6.4264 26 1 -0.3633 0.4874 0.9048 27 1 -0.3633 0.5399 -0.8745 28 1 -0.3633 -1.0272 -0.0303 29 1 1.3141 -1.4754 1.5780 30 1 2.3707 -0.1011 2.0010 31 1 5.5401 -1.4339 -0.5464 32 1 7.5933 -2.5164 -1.4287 33 1 8.3692 -4.6273 -0.4310 34 1 5.2176 -4.6610 2.2672 35 1 4.1970 -0.4354 -0.7885 36 1 3.8102 -2.1313 -1.2120 37 1 2.3415 1.0263 -2.2732 38 1 2.5826 2.2174 -5.3797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054328406.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:15 Heat of formation + Delta-G solvation = 21.347646 kcal Electronic energy + Delta-G solvation = -21096.754206 eV Core-core repulsion = 17939.665798 eV Total energy + Delta-G solvation = -3157.088409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70951 -39.28202 -37.55659 -34.25252 -33.28743 -32.05213 -31.37117 -30.76658 -27.73457 -26.59831 -24.60026 -23.71528 -23.46952 -21.59418 -20.16016 -19.67739 -17.32890 -17.17714 -17.04016 -16.35826 -16.05553 -15.45102 -14.60029 -14.40014 -14.12774 -13.82238 -13.66638 -13.54556 -13.12016 -12.95184 -12.81142 -12.64716 -12.19105 -11.94813 -11.69725 -11.19150 -11.07530 -10.78631 -10.69677 -10.34120 -10.15160 -10.10505 -9.91891 -9.84024 -9.53209 -9.28085 -9.09362 -8.46706 -7.18638 -5.94337 -3.25601 0.62960 1.13043 2.84244 3.05241 3.33231 3.39614 3.40514 3.77772 4.24891 4.42835 4.55278 4.72122 4.77716 4.88159 4.98101 5.04264 5.14779 5.32783 5.46111 5.54231 5.59913 5.62401 5.75247 5.79549 5.92721 5.95547 5.97655 6.11666 6.12276 6.25956 6.35469 6.38439 6.50528 6.55994 6.75304 7.54807 7.60403 7.78044 8.18111 8.23274 9.35305 9.87503 10.22760 11.27325 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.005621 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.112020 B = 4980.398931 C = 6479.959033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.574 3.426 7 O -0.546 6.546 8 C -0.180 4.180 9 C -0.048 4.048 10 C -0.178 4.178 11 C 0.115 3.885 12 N -0.492 5.492 13 C 0.153 3.847 14 C 0.065 3.935 15 C 0.177 3.823 16 H 0.071 0.929 17 N -0.708 5.708 18 C -0.251 4.251 19 H 0.072 0.928 20 C -0.005 4.005 21 N -0.928 5.928 22 Si 0.907 3.093 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.387 0.613 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -5.963 8.823 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.363 3.637 7 O -0.425 6.425 8 C -0.185 4.185 9 C -0.074 4.074 10 C -0.198 4.198 11 C -0.042 4.042 12 N -0.200 5.200 13 C -0.005 4.005 14 C -0.060 4.060 15 C 0.064 3.936 16 H 0.089 0.911 17 N -0.348 5.348 18 C -0.382 4.382 19 H 0.090 0.910 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.737 3.263 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.182 0.818 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.222 0.778 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.904 -7.001 9.614 12.865 hybrid contribution -0.118 0.853 -1.457 1.693 sum 4.786 -6.148 8.157 11.280 Atomic orbital electron populations 1.21650 0.93789 1.01828 1.01840 1.22542 0.96652 0.99816 0.94512 0.89709 1.22025 0.87240 0.94348 0.96996 1.48390 1.29400 1.43685 1.12390 1.17746 0.82596 0.78504 0.84876 1.90757 1.71847 1.61613 1.18302 1.20947 0.98349 0.99197 0.99966 1.22472 0.93115 0.99748 0.92038 1.22191 0.97822 0.97587 1.02181 1.23001 0.97934 0.92135 0.91089 1.67788 1.07598 1.33392 1.11265 1.22933 0.90720 0.90628 0.96252 1.23871 1.02881 1.00505 0.78776 1.21443 0.91523 0.93882 0.86736 0.91126 1.42298 1.86150 1.06212 1.00113 1.19239 1.43193 0.92688 0.83082 0.90974 1.24753 1.02066 0.95406 0.97987 1.69650 1.55696 1.02735 1.29435 0.86207 0.77598 0.78080 0.84377 1.21526 1.21661 1.20640 0.93154 0.91345 0.92826 0.91321 0.91770 0.82776 0.83957 0.82377 0.81777 0.90890 0.90835 0.77810 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.14 37.16 0.34 -1.47 16 2 C -0.12 -1.71 3.18 -88.78 -0.28 -1.99 16 3 H 0.08 1.28 8.00 -51.93 -0.42 0.86 16 4 C 0.12 1.67 6.47 -3.06 -0.02 1.65 16 5 N -0.61 -9.34 3.32 -171.50 -0.57 -9.91 16 6 C 0.57 9.31 7.66 -12.33 -0.09 9.21 16 7 O -0.55 -10.13 16.95 5.32 0.09 -10.04 16 8 C -0.18 -2.57 5.68 -104.82 -0.60 -3.17 16 9 C -0.05 -0.62 8.19 -38.87 -0.32 -0.93 16 10 C -0.18 -1.95 10.10 -39.50 -0.40 -2.35 16 11 C 0.11 1.26 11.17 -17.47 -0.20 1.07 16 12 N -0.49 -6.51 10.35 -12.91 -0.13 -6.65 16 13 C 0.15 2.10 10.76 -17.13 -0.18 1.92 16 14 C 0.07 1.04 4.70 -2.41 -0.01 1.02 16 15 C 0.18 3.12 3.18 -65.66 -0.21 2.91 16 16 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 17 N -0.71 -15.68 5.24 -51.23 -0.27 -15.94 16 18 C -0.25 -6.32 9.96 -15.06 -0.15 -6.47 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 21 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 22 Si 0.91 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.07 0.97 7.82 -51.94 -0.41 0.56 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.15 1.98 4.69 -52.49 -0.25 1.73 16 32 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.17 2.11 7.84 -52.48 -0.41 1.70 16 35 H 0.07 1.16 6.87 -51.93 -0.36 0.81 16 36 H 0.07 1.17 6.80 -51.93 -0.35 0.82 16 37 H 0.39 9.17 7.76 -40.82 -0.32 8.86 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -29.57 318.09 -7.61 -37.18 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.00 Total: 8.75 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.22 Total: 1.16 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.25 Total: -57.78 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.57 -7.61 -37.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054328406.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.523 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds