Wall clock time and date at job start Mon Mar 30 2020 02:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99688 * 2 1 4 4 C 1.52999 * 109.46932 * 277.32245 * 3 2 1 5 5 H 1.08998 * 112.96752 * 53.37684 * 4 3 2 6 6 C 1.53943 * 113.76674 * 185.05980 * 4 3 2 7 7 C 1.53946 * 86.28768 * 137.90641 * 6 4 3 8 8 N 1.47576 * 86.11959 * 336.39230 * 7 6 4 9 9 C 1.36938 * 134.49213 * 204.64720 * 8 7 6 10 10 H 1.07990 * 120.00611 * 55.07272 * 9 8 7 11 11 C 1.38813 * 119.99528 * 235.07290 * 9 8 7 12 12 N 1.31619 * 120.00126 * 192.05915 * 11 9 8 13 13 Si 1.86809 * 120.00269 * 12.05856 * 11 9 8 14 14 H 1.48500 * 109.46935 * 92.68636 * 13 11 9 15 15 H 1.48496 * 109.47221 * 212.69145 * 13 11 9 16 16 H 1.48504 * 109.46692 * 332.68861 * 13 11 9 17 17 C 1.34771 * 120.00102 * 179.97438 * 2 1 3 18 18 O 1.21516 * 120.00022 * 182.87475 * 17 2 1 19 19 C 1.48172 * 120.00118 * 2.87598 * 17 2 1 20 20 C 1.39306 * 119.72344 * 173.33329 * 19 17 2 21 21 C 1.38590 * 119.05877 * 180.02562 * 20 19 17 22 22 C 1.38621 * 118.49020 * 359.97438 * 21 20 19 23 23 C 1.38565 * 119.35114 * 0.02562 * 22 21 20 24 24 N 1.31522 * 120.90149 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47384 * 264.09523 * 1 2 3 26 26 H 1.08999 * 109.47447 * 24.09916 * 1 2 3 27 27 H 1.08998 * 109.47179 * 144.09916 * 1 2 3 28 28 H 1.08996 * 109.47065 * 37.31953 * 3 2 1 29 29 H 1.08995 * 109.47200 * 157.31958 * 3 2 1 30 30 H 1.08996 * 113.74133 * 252.24688 * 6 4 3 31 31 H 1.08993 * 113.74370 * 23.45599 * 6 4 3 32 32 H 1.09002 * 113.77449 * 90.69636 * 7 6 4 33 33 H 1.09008 * 113.77235 * 221.97509 * 7 6 4 34 34 H 0.97005 * 120.00405 * 180.02562 * 12 11 9 35 35 H 1.08001 * 120.46709 * 359.97438 * 20 19 17 36 36 H 1.07997 * 120.75389 * 179.72877 * 21 20 19 37 37 H 1.07994 * 120.32764 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.55054 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2932 1.8024 -1.4307 5 1 1.3237 1.8740 -1.9237 6 6 3.1519 3.0732 -1.5628 7 6 3.7292 2.4300 -2.8368 8 7 3.3296 1.1385 -2.2450 9 6 3.7513 -0.1560 -2.3923 10 1 4.7913 -0.4055 -2.2432 11 6 2.8417 -1.1476 -2.7334 12 7 3.1857 -2.4150 -2.6446 13 14 1.1294 -0.6834 -3.3184 14 1 1.1207 -0.5916 -4.8005 15 1 0.1591 -1.7189 -2.8807 16 1 0.7474 0.6294 -2.7388 17 6 2.1389 -1.1671 0.0005 18 8 3.3529 -1.1678 0.0533 19 6 1.3995 -2.4496 -0.0633 20 6 2.1009 -3.6451 -0.2029 21 6 1.3954 -4.8365 -0.2616 22 6 0.0125 -4.7909 -0.1782 23 6 -0.6196 -3.5656 -0.0401 24 7 0.0745 -2.4497 0.0130 25 1 -0.3634 -0.1057 1.0222 26 1 -0.3634 0.9381 -0.4196 27 1 -0.3633 -0.8324 -0.6026 28 1 1.6713 1.9920 0.6230 29 1 3.2002 1.1094 0.3962 30 1 2.5723 3.9768 -1.7515 31 1 3.8809 3.1955 -0.7619 32 1 3.1824 2.6853 -3.7445 33 1 4.8073 2.5527 -2.9412 34 1 2.5502 -3.1079 -2.8833 35 1 3.1791 -3.6433 -0.2653 36 1 1.9111 -5.7787 -0.3740 37 1 -0.5668 -5.7014 -0.2212 38 1 -1.6969 -3.5263 0.0249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085444372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:04 Heat of formation + Delta-G solvation = 100.906919 kcal Electronic energy + Delta-G solvation = -22958.025281 eV Core-core repulsion = 19804.386822 eV Total energy + Delta-G solvation = -3153.638460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08620 -38.62266 -37.31656 -34.59881 -32.20267 -32.11308 -30.83160 -28.57912 -27.89905 -25.88051 -23.97890 -23.05294 -22.80225 -22.04806 -19.36711 -19.19604 -16.80548 -16.41860 -16.31854 -15.57742 -15.27232 -15.07287 -14.66094 -14.16318 -13.88249 -13.44400 -13.07866 -12.98700 -12.89968 -12.57352 -12.08319 -12.01316 -11.78278 -11.64041 -11.31334 -11.23506 -10.80421 -10.63764 -10.13605 -10.01278 -9.70519 -9.51036 -9.34575 -9.18060 -8.60563 -8.51440 -8.24714 -7.60397 -6.32305 -5.86278 -3.44383 1.27670 1.71350 3.38832 3.49043 3.52587 3.65305 3.82266 4.56893 4.63894 4.69631 4.95418 5.14463 5.29996 5.36720 5.40109 5.56064 5.62383 5.79415 5.86224 5.89837 6.02185 6.10740 6.21497 6.24310 6.32304 6.41529 6.50904 6.54460 6.59529 6.66981 6.72916 6.80221 7.13451 7.22173 7.50452 8.01535 8.17020 8.36100 8.43212 8.95640 9.28098 9.77279 10.63459 11.27187 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.008854 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.484295 B = 3161.592593 C = 3422.058541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.604 5.604 3 C 0.126 3.874 4 C 0.104 3.896 5 H 0.058 0.942 6 C -0.146 4.146 7 C 0.102 3.898 8 N -0.605 5.605 9 C -0.211 4.211 10 H 0.073 0.927 11 C 0.053 3.947 12 N -0.884 5.884 13 Si 0.849 3.151 14 H -0.299 1.299 15 H -0.295 1.295 16 H -0.246 1.246 17 C 0.571 3.429 18 O -0.471 6.471 19 C 0.101 3.899 20 C -0.074 4.074 21 C -0.094 4.094 22 C -0.165 4.165 23 C 0.072 3.928 24 N -0.461 5.461 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.254 0.746 35 H 0.155 0.845 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 0.537 6.452 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.338 5.338 3 C 0.002 3.998 4 C -0.003 4.003 5 H 0.075 0.925 6 C -0.185 4.185 7 C -0.023 4.023 8 N -0.333 5.333 9 C -0.340 4.340 10 H 0.091 0.909 11 C -0.149 4.149 12 N -0.524 5.524 13 Si 0.679 3.321 14 H -0.227 1.227 15 H -0.222 1.222 16 H -0.171 1.171 17 C 0.356 3.644 18 O -0.340 6.340 19 C -0.037 4.037 20 C -0.094 4.094 21 C -0.120 4.120 22 C -0.185 4.185 23 C -0.086 4.086 24 N -0.174 5.174 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.622 0.930 6.543 10.088 hybrid contribution -1.006 -0.819 -0.944 1.604 sum -8.628 0.111 5.599 10.286 Atomic orbital electron populations 1.22274 0.80169 1.02585 1.01614 1.47367 1.06466 1.05614 1.74378 1.21630 0.97716 0.83644 0.96807 1.23278 0.94436 0.90478 0.92076 0.92509 1.23552 0.99520 0.95920 0.99520 1.22746 0.97921 0.87950 0.93643 1.46119 1.39981 1.02619 1.44602 1.18285 0.95300 0.79415 1.40990 0.90922 1.25845 0.97508 0.95372 0.96190 1.69881 1.34877 0.98772 1.48907 0.87377 0.86336 0.79709 0.78677 1.22714 1.22151 1.17096 1.17428 0.86670 0.82201 0.78125 1.90799 1.12093 1.85753 1.45394 1.21413 0.89215 0.95145 0.97919 1.22195 1.03159 0.91097 0.92952 1.21562 0.94054 0.98690 0.97671 1.22157 0.95557 0.99269 1.01554 1.22713 1.00068 0.88125 0.97685 1.68027 1.07779 1.29608 1.12019 0.93729 0.93467 0.87962 0.92187 0.89252 0.92999 0.90463 0.95236 0.93518 0.93552 0.82724 0.84844 0.85341 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 8.42 59.85 0.50 1.92 16 2 N -0.60 -12.91 1.95 -182.58 -0.36 -13.26 16 3 C 0.13 2.52 5.35 -4.04 -0.02 2.49 16 4 C 0.10 2.19 3.12 -66.86 -0.21 1.98 16 5 H 0.06 1.27 5.76 -51.93 -0.30 0.97 16 6 C -0.15 -2.59 7.86 -25.81 -0.20 -2.80 16 7 C 0.10 2.12 8.93 -2.98 -0.03 2.09 16 8 N -0.60 -15.08 2.60 -170.75 -0.44 -15.52 16 9 C -0.21 -6.11 8.43 -15.06 -0.13 -6.24 16 10 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 11 C 0.05 1.51 2.98 -17.43 -0.05 1.46 16 12 N -0.88 -25.79 11.80 55.49 0.65 -25.14 16 13 Si 0.85 22.46 24.09 -169.99 -4.10 18.36 16 14 H -0.30 -8.30 7.11 56.52 0.40 -7.90 16 15 H -0.29 -7.84 7.11 56.52 0.40 -7.43 16 16 H -0.25 -6.13 4.17 56.52 0.24 -5.90 16 17 C 0.57 13.60 4.14 -12.18 -0.05 13.55 16 18 O -0.47 -12.71 13.06 5.35 0.07 -12.64 16 19 C 0.10 2.20 5.81 -83.01 -0.48 1.72 16 20 C -0.07 -1.51 7.98 -39.05 -0.31 -1.82 16 21 C -0.09 -1.52 10.17 -39.31 -0.40 -1.92 16 22 C -0.17 -2.38 10.11 -39.32 -0.40 -2.78 16 23 C 0.07 1.13 11.18 -17.56 -0.20 0.94 16 24 N -0.46 -8.88 6.00 -9.80 -0.06 -8.94 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.79 8.03 -51.93 -0.42 0.37 16 27 H 0.10 2.06 4.44 -53.28 -0.24 1.82 16 28 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 29 H 0.09 1.97 7.18 -51.93 -0.37 1.60 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.25 7.22 8.03 -40.82 -0.33 6.89 16 35 H 0.16 3.49 7.55 -52.49 -0.40 3.10 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 294.37 15.07 4.44 4.44 Total: -1.00 -33.20 294.37 -7.00 -40.20 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.24 Total: 1.92 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -1.97 Total: 10.59 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.20 Total: -62.87 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.10 Total: 18.36 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.20 -7.00 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085444372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.105 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds