Wall clock time and date at job start Mon Mar 30 2020 02:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99688 * 2 1 4 4 C 1.52999 * 109.46932 * 277.32245 * 3 2 1 5 5 H 1.08998 * 112.96752 * 53.37684 * 4 3 2 6 6 C 1.53943 * 113.76674 * 185.05980 * 4 3 2 7 7 C 1.53946 * 86.28768 * 137.90641 * 6 4 3 8 8 N 1.47576 * 86.11959 * 336.39230 * 7 6 4 9 9 C 1.36938 * 134.49213 * 204.64720 * 8 7 6 10 10 H 1.07990 * 120.00611 * 55.07272 * 9 8 7 11 11 C 1.38813 * 119.99528 * 235.07290 * 9 8 7 12 12 N 1.31619 * 120.00126 * 192.05915 * 11 9 8 13 13 Si 1.86809 * 120.00269 * 12.05856 * 11 9 8 14 14 H 1.48500 * 109.46935 * 92.68636 * 13 11 9 15 15 H 1.48496 * 109.47221 * 212.69145 * 13 11 9 16 16 H 1.48504 * 109.46692 * 332.68861 * 13 11 9 17 17 C 1.34771 * 120.00102 * 179.97438 * 2 1 3 18 18 O 1.21516 * 120.00022 * 182.87475 * 17 2 1 19 19 C 1.48172 * 120.00118 * 2.87598 * 17 2 1 20 20 C 1.39306 * 119.72344 * 173.33329 * 19 17 2 21 21 C 1.38590 * 119.05877 * 180.02562 * 20 19 17 22 22 C 1.38621 * 118.49020 * 359.97438 * 21 20 19 23 23 C 1.38565 * 119.35114 * 0.02562 * 22 21 20 24 24 N 1.31522 * 120.90149 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47384 * 264.09523 * 1 2 3 26 26 H 1.08999 * 109.47447 * 24.09916 * 1 2 3 27 27 H 1.08998 * 109.47179 * 144.09916 * 1 2 3 28 28 H 1.08996 * 109.47065 * 37.31953 * 3 2 1 29 29 H 1.08995 * 109.47200 * 157.31958 * 3 2 1 30 30 H 1.08996 * 113.74133 * 252.24688 * 6 4 3 31 31 H 1.08993 * 113.74370 * 23.45599 * 6 4 3 32 32 H 1.09002 * 113.77449 * 90.69636 * 7 6 4 33 33 H 1.09008 * 113.77235 * 221.97509 * 7 6 4 34 34 H 0.97005 * 120.00405 * 180.02562 * 12 11 9 35 35 H 1.08001 * 120.46709 * 359.97438 * 20 19 17 36 36 H 1.07997 * 120.75389 * 179.72877 * 21 20 19 37 37 H 1.07994 * 120.32764 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.55054 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2932 1.8024 -1.4307 5 1 1.3237 1.8740 -1.9237 6 6 3.1519 3.0732 -1.5628 7 6 3.7292 2.4300 -2.8368 8 7 3.3296 1.1385 -2.2450 9 6 3.7513 -0.1560 -2.3923 10 1 4.7913 -0.4055 -2.2432 11 6 2.8417 -1.1476 -2.7334 12 7 3.1857 -2.4150 -2.6446 13 14 1.1294 -0.6834 -3.3184 14 1 1.1207 -0.5916 -4.8005 15 1 0.1591 -1.7189 -2.8807 16 1 0.7474 0.6294 -2.7388 17 6 2.1389 -1.1671 0.0005 18 8 3.3529 -1.1678 0.0533 19 6 1.3995 -2.4496 -0.0633 20 6 2.1009 -3.6451 -0.2029 21 6 1.3954 -4.8365 -0.2616 22 6 0.0125 -4.7909 -0.1782 23 6 -0.6196 -3.5656 -0.0401 24 7 0.0745 -2.4497 0.0130 25 1 -0.3634 -0.1057 1.0222 26 1 -0.3634 0.9381 -0.4196 27 1 -0.3633 -0.8324 -0.6026 28 1 1.6713 1.9920 0.6230 29 1 3.2002 1.1094 0.3962 30 1 2.5723 3.9768 -1.7515 31 1 3.8809 3.1955 -0.7619 32 1 3.1824 2.6853 -3.7445 33 1 4.8073 2.5527 -2.9412 34 1 2.5502 -3.1079 -2.8833 35 1 3.1791 -3.6433 -0.2653 36 1 1.9111 -5.7787 -0.3740 37 1 -0.5668 -5.7014 -0.2212 38 1 -1.6969 -3.5263 0.0249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085444372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:04 Heat of formation + Delta-G solvation = 78.010308 kcal Electronic energy + Delta-G solvation = -22959.018153 eV Core-core repulsion = 19804.386822 eV Total energy + Delta-G solvation = -3154.631331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57002 -40.21302 -39.00629 -36.28343 -34.31551 -33.47743 -32.24024 -30.41592 -29.57109 -27.41424 -25.50074 -24.79364 -24.31241 -23.56955 -21.10750 -20.80321 -18.58495 -18.15520 -17.77202 -17.28636 -16.83352 -16.67994 -16.26621 -15.63597 -15.43163 -15.38235 -14.84863 -14.53301 -14.32664 -14.20028 -13.97267 -13.61956 -13.52011 -13.11481 -13.05171 -12.63175 -12.53944 -12.45083 -11.88327 -11.76224 -11.58349 -11.26057 -10.92076 -10.77846 -10.40234 -9.99809 -9.97247 -9.25741 -8.29531 -8.02202 -5.61765 -0.11516 0.38591 1.27039 1.31618 1.41571 2.07958 2.30353 2.45833 3.07706 3.17264 3.26493 3.37023 3.90741 3.97386 4.03995 4.21474 4.26606 4.28544 4.46840 4.49698 4.52240 4.58799 4.70935 4.82656 4.92076 4.94511 5.01436 5.07713 5.13772 5.20173 5.26021 5.31003 5.63392 5.77668 5.97381 6.04151 6.35528 6.62552 6.73887 6.89451 7.56954 7.61099 8.57280 9.13726 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.008854 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.484295 B = 3161.592593 C = 3422.058541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.607 5.607 3 C 0.124 3.876 4 C 0.099 3.901 5 H 0.058 0.942 6 C -0.115 4.115 7 C 0.093 3.907 8 N -0.634 5.634 9 C -0.212 4.212 10 H 0.011 0.989 11 C 0.022 3.978 12 N -0.910 5.910 13 Si 0.900 3.100 14 H -0.317 1.317 15 H -0.295 1.295 16 H -0.220 1.220 17 C 0.563 3.437 18 O -0.527 6.527 19 C 0.068 3.932 20 C -0.101 4.101 21 C -0.093 4.093 22 C -0.143 4.143 23 C 0.069 3.931 24 N -0.470 5.470 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.252 0.748 35 H 0.114 0.886 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 1.396 6.963 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.341 5.341 3 C 0.001 3.999 4 C -0.006 4.006 5 H 0.075 0.925 6 C -0.154 4.154 7 C -0.031 4.031 8 N -0.363 5.363 9 C -0.342 4.342 10 H 0.029 0.971 11 C -0.177 4.177 12 N -0.552 5.552 13 Si 0.730 3.270 14 H -0.247 1.247 15 H -0.221 1.221 16 H -0.144 1.144 17 C 0.350 3.650 18 O -0.401 6.401 19 C -0.068 4.068 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.162 4.162 23 C -0.090 4.090 24 N -0.183 5.183 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.133 0.867 36 H 0.179 0.821 37 H 0.198 0.802 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.574 1.843 7.070 13.687 hybrid contribution 0.210 -1.162 -1.051 1.581 sum -11.363 0.681 6.018 12.877 Atomic orbital electron populations 1.22400 0.78121 1.03149 1.03011 1.47577 1.07855 1.05317 1.73303 1.21702 0.97048 0.84253 0.96943 1.23412 0.93780 0.91620 0.91813 0.92457 1.23354 0.98703 0.95826 0.97505 1.22948 0.98312 0.86105 0.95689 1.46333 1.41221 1.02240 1.46469 1.17742 0.93012 0.82042 1.41400 0.97136 1.26151 1.00137 0.95011 0.96419 1.70010 1.35718 0.99481 1.49959 0.86587 0.83042 0.80680 0.76716 1.24694 1.22145 1.14380 1.17921 0.86383 0.83677 0.77042 1.90759 1.14422 1.86710 1.48207 1.21130 0.90443 0.94250 1.01012 1.22021 1.01621 0.93059 0.95475 1.21928 0.95363 0.98103 0.96478 1.22707 0.94612 1.00934 0.97987 1.23600 1.02031 0.87671 0.95689 1.68005 1.06312 1.31488 1.12512 0.91502 0.91343 0.89261 0.87493 0.92258 0.88572 0.89635 0.94126 0.93753 0.93897 0.86740 0.82088 0.80185 0.78668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.56 8.42 127.77 1.08 3.64 16 2 N -0.61 -25.54 1.95 -849.84 -1.66 -27.20 16 3 C 0.12 4.80 5.35 86.38 0.46 5.26 16 4 C 0.10 4.00 3.12 45.09 0.14 4.14 16 5 H 0.06 2.34 5.76 -2.39 -0.01 2.33 16 6 C -0.12 -3.71 7.86 31.25 0.25 -3.47 16 7 C 0.09 3.77 8.93 86.48 0.77 4.54 16 8 N -0.63 -31.91 2.60 -694.12 -1.80 -33.71 16 9 C -0.21 -12.96 8.43 84.03 0.71 -12.25 16 10 H 0.01 0.79 8.06 -2.92 -0.02 0.77 16 11 C 0.02 1.34 2.98 84.86 0.25 1.59 16 12 N -0.91 -56.10 11.80 21.65 0.26 -55.85 16 13 Si 0.90 46.82 24.09 68.60 1.65 48.47 16 14 H -0.32 -17.35 7.11 99.48 0.71 -16.64 16 15 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 16 H -0.22 -10.34 4.17 99.48 0.42 -9.92 16 17 C 0.56 27.76 4.14 86.88 0.36 28.12 16 18 O -0.53 -30.65 13.06 -3.77 -0.05 -30.70 16 19 C 0.07 3.01 5.81 41.91 0.24 3.25 16 20 C -0.10 -4.31 7.98 22.61 0.18 -4.13 16 21 C -0.09 -2.90 10.17 22.45 0.23 -2.67 16 22 C -0.14 -3.52 10.11 22.44 0.23 -3.29 16 23 C 0.07 1.90 11.18 84.82 0.95 2.84 16 24 N -0.47 -17.22 6.00 -184.91 -1.11 -18.33 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 2.00 8.03 -2.39 -0.02 1.99 16 27 H 0.09 3.36 4.44 -5.06 -0.02 3.34 16 28 H 0.11 3.10 8.12 -2.39 -0.02 3.08 16 29 H 0.06 2.67 7.18 -2.39 -0.02 2.65 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.09 2.64 8.10 -2.39 -0.02 2.62 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.25 14.93 8.03 -92.70 -0.74 14.19 16 35 H 0.11 5.72 7.55 -2.91 -0.02 5.70 16 36 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.20 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -80.43 294.37 3.91 -76.52 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.78 Total: 13.23 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 5.85 Total: 27.58 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -4.32 Total: -135.09 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.05 Total: -30.70 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.65 Total: 48.47 kcal Total: -80.43 3.91 -76.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085444372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.527 kcal (2) G-P(sol) polarization free energy of solvation -80.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds