Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00326 * 2 1 4 4 C 1.52998 * 109.46947 * 94.95760 * 3 2 1 5 5 H 1.08999 * 112.78274 * 44.67048 * 4 3 2 6 6 C 1.53236 * 113.38438 * 273.96180 * 4 3 2 7 7 C 1.53500 * 83.43089 * 219.29682 * 6 4 3 8 8 N 1.47060 * 87.98410 * 25.89697 * 7 6 4 9 9 C 1.36935 * 136.05488 * 152.85287 * 8 7 6 10 10 H 1.08003 * 119.99815 * 175.27515 * 9 8 7 11 11 C 1.38807 * 120.00366 * 354.99127 * 9 8 7 12 12 N 1.31622 * 119.99699 * 0.28003 * 11 9 8 13 13 Si 1.86800 * 120.00407 * 180.28195 * 11 9 8 14 14 H 1.48498 * 109.47023 * 90.00250 * 13 11 9 15 15 H 1.48503 * 109.46997 * 210.00185 * 13 11 9 16 16 H 1.48492 * 109.46901 * 329.99721 * 13 11 9 17 17 C 1.34783 * 119.99657 * 179.97438 * 2 1 3 18 18 O 1.21516 * 119.99814 * 185.06188 * 17 2 1 19 19 C 1.48144 * 120.00049 * 5.06356 * 17 2 1 20 20 C 1.39817 * 120.92349 * 20.22055 * 19 17 2 21 21 C 1.38154 * 119.00254 * 179.79519 * 20 19 17 22 22 N 1.31809 * 120.89248 * 0.49840 * 21 20 19 23 23 C 1.31806 * 122.05167 * 359.73089 * 22 21 20 24 24 C 1.38146 * 120.89820 * 0.02895 * 23 22 21 25 25 H 1.08997 * 109.46998 * 84.62879 * 1 2 3 26 26 H 1.08994 * 109.47579 * 204.63278 * 1 2 3 27 27 H 1.09001 * 109.47070 * 324.63634 * 1 2 3 28 28 H 1.08997 * 109.46725 * 334.95707 * 3 2 1 29 29 H 1.09000 * 109.46965 * 214.95333 * 3 2 1 30 30 H 1.08999 * 114.32481 * 105.66038 * 6 4 3 31 31 H 1.09002 * 114.19357 * 332.91945 * 6 4 3 32 32 H 1.09009 * 113.45959 * 271.11716 * 7 6 4 33 33 H 1.08994 * 113.52435 * 140.68899 * 7 6 4 34 34 H 0.97003 * 120.00302 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.50139 * 0.02562 * 20 19 17 36 36 H 1.08000 * 119.55296 * 180.22957 * 21 20 19 37 37 H 1.08005 * 119.55231 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.50121 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5605 1.6480 1.4371 5 1 2.9511 0.8068 2.0098 6 6 1.4508 2.4170 2.1619 7 6 2.6252 3.2253 2.7310 8 7 3.3922 2.8573 1.5314 9 6 4.4231 3.4032 0.8143 10 1 4.8527 2.8589 -0.0137 11 6 4.9121 4.6588 1.1479 12 7 4.3885 5.3222 2.1569 13 14 6.3133 5.4069 0.1648 14 1 5.7593 6.1964 -0.9644 15 1 7.1153 6.2956 1.0436 16 1 7.1790 4.3236 -0.3662 17 6 2.1388 -1.1673 0.0005 18 8 3.3504 -1.1693 0.0934 19 6 1.4024 -2.4478 -0.1121 20 6 0.1041 -2.4868 -0.6297 21 6 -0.5444 -3.7033 -0.7208 22 7 0.0409 -4.8139 -0.3190 23 6 1.2612 -4.8209 0.1789 24 6 1.9840 -3.6500 0.3016 25 1 -0.3633 0.0962 -1.0231 26 1 -0.3634 -0.9341 0.4283 27 1 -0.3633 0.8381 0.5948 28 1 1.5729 2.0489 -0.4350 29 1 3.1087 1.1621 -0.5888 30 1 0.9100 1.8309 2.9049 31 1 0.7960 2.9850 1.5011 32 1 3.0331 2.8084 3.6519 33 1 2.4223 4.2936 2.8057 34 1 4.7304 6.1994 2.3903 35 1 -0.3831 -1.5801 -0.9568 36 1 -1.5460 -3.7443 -1.1226 37 1 1.7021 -5.7547 0.4954 38 1 2.9834 -3.6631 0.7109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085455468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = 92.619359 kcal Electronic energy + Delta-G solvation = -20995.692444 eV Core-core repulsion = 17841.694608 eV Total energy + Delta-G solvation = -3153.997835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91247 -39.26638 -37.93252 -35.59066 -32.95246 -32.13274 -31.54538 -28.61115 -27.91792 -26.96751 -24.38973 -23.65804 -23.41186 -22.16881 -19.94346 -19.20117 -17.65443 -16.93579 -16.73297 -16.23401 -15.66225 -15.47915 -15.19476 -14.62060 -14.21185 -14.05252 -13.90001 -13.48839 -13.36751 -13.11582 -12.68035 -12.49688 -11.94990 -11.58902 -11.42320 -11.12118 -10.88022 -10.76002 -10.43332 -10.24813 -10.04611 -9.83874 -9.80280 -9.63078 -9.50308 -9.34504 -8.76698 -8.38854 -6.85311 -5.73558 -3.07241 0.57022 0.83470 2.82020 2.97950 3.40970 3.46378 3.48662 3.63689 4.15775 4.24605 4.47807 4.54555 4.68566 4.82192 4.99276 5.17759 5.21341 5.28708 5.43705 5.48922 5.50703 5.54756 5.61933 5.73552 5.86093 5.94930 6.15736 6.24843 6.33312 6.41022 6.49655 6.67233 6.83022 7.24592 7.40957 7.43911 7.60457 7.64616 8.01858 8.16539 9.06823 9.73318 10.66757 11.43029 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.003975 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.019024 B = 7041.642812 C = 7411.471778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.117 3.883 4 C 0.135 3.865 5 H 0.045 0.955 6 C -0.168 4.168 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.215 4.215 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.548 3.452 18 O -0.520 6.520 19 C -0.079 4.079 20 C -0.166 4.166 21 C 0.091 3.909 22 N -0.475 5.475 23 C 0.093 3.907 24 C -0.118 4.118 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 -15.234 -4.296 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.332 5.332 3 C -0.006 4.006 4 C 0.027 3.973 5 H 0.063 0.937 6 C -0.206 4.206 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.343 4.343 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.742 3.258 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.206 1.206 17 C 0.335 3.665 18 O -0.396 6.396 19 C -0.091 4.091 20 C -0.185 4.185 21 C -0.066 4.066 22 N -0.185 5.185 23 C -0.063 4.063 24 C -0.138 4.138 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.657 -15.704 -4.398 20.643 hybrid contribution 1.284 1.227 -0.295 1.800 sum -11.373 -14.477 -4.694 18.999 Atomic orbital electron populations 1.22538 0.80231 1.04128 1.01560 1.47777 1.06827 1.06373 1.72233 1.21970 0.96755 0.82042 0.99788 1.22358 0.90526 0.91538 0.92922 0.93725 1.23690 0.96890 0.99903 1.00104 1.22088 0.86696 0.99699 0.89229 1.45616 1.38826 1.20137 1.27987 1.18923 1.07961 0.98197 1.09189 0.90253 1.24778 1.00084 0.96892 0.98604 1.69828 1.43816 1.13732 1.29344 0.86126 0.81679 0.79001 0.79038 1.21509 1.21650 1.20620 1.18267 0.87175 0.83311 0.77770 1.90835 1.13391 1.86808 1.48557 1.20478 0.94664 0.94610 0.99300 1.23338 0.94590 1.01321 0.99299 1.22797 1.00136 0.87386 0.96305 1.67529 1.10978 1.31166 1.08796 1.22781 0.90083 0.97955 0.95530 1.22352 1.01617 0.91967 0.97910 0.91968 0.89618 0.90391 0.89878 0.90104 0.92906 0.90551 0.96138 0.90495 0.93726 0.81921 0.82221 0.82116 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 8.66 59.85 0.52 1.06 16 2 N -0.60 -8.58 2.88 -182.59 -0.53 -9.11 16 3 C 0.12 2.10 5.28 -4.04 -0.02 2.08 16 4 C 0.13 2.82 4.28 -72.53 -0.31 2.51 16 5 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.17 -3.11 7.87 -26.35 -0.21 -3.32 16 7 C 0.15 3.55 7.52 -8.50 -0.06 3.49 16 8 N -0.60 -15.61 3.65 -177.16 -0.65 -16.26 16 9 C -0.22 -6.14 10.55 -15.06 -0.16 -6.30 16 10 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.55 11.42 55.49 0.63 -26.92 16 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.55 8.64 7.53 -12.19 -0.09 8.55 16 18 O -0.52 -10.49 16.34 5.35 0.09 -10.40 16 19 C -0.08 -0.97 5.62 -104.65 -0.59 -1.56 16 20 C -0.17 -1.52 7.69 -39.02 -0.30 -1.82 16 21 C 0.09 0.79 11.17 -17.59 -0.20 0.59 16 22 N -0.48 -4.98 10.33 -13.31 -0.14 -5.12 16 23 C 0.09 0.91 11.17 -17.60 -0.20 0.72 16 24 C -0.12 -1.34 9.68 -39.02 -0.38 -1.72 16 25 H 0.06 0.44 7.25 -51.93 -0.38 0.06 16 26 H 0.09 0.67 4.89 -51.93 -0.25 0.42 16 27 H 0.08 0.70 7.98 -51.93 -0.41 0.29 16 28 H 0.08 1.39 7.77 -51.93 -0.40 0.99 16 29 H 0.08 1.67 7.65 -51.93 -0.40 1.28 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.34 7.93 -51.93 -0.41 0.92 16 32 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.08 2.02 6.92 -51.93 -0.36 1.66 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.16 1.11 4.16 -52.48 -0.22 0.89 16 36 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.15 1.64 7.87 -52.49 -0.41 1.23 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -34.81 317.16 -7.83 -42.64 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.91 Total: -1.08 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.09 Total: 3.98 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.68 Total: -57.41 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.81 -7.83 -42.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085455468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.257 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds