Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00326 * 2 1 4 4 C 1.52998 * 109.46947 * 94.95760 * 3 2 1 5 5 H 1.08999 * 112.78274 * 44.67048 * 4 3 2 6 6 C 1.53236 * 113.38438 * 273.96180 * 4 3 2 7 7 C 1.53500 * 83.43089 * 219.29682 * 6 4 3 8 8 N 1.47060 * 87.98410 * 25.89697 * 7 6 4 9 9 C 1.36935 * 136.05488 * 152.85287 * 8 7 6 10 10 H 1.08003 * 119.99815 * 175.27515 * 9 8 7 11 11 C 1.38807 * 120.00366 * 354.99127 * 9 8 7 12 12 N 1.31622 * 119.99699 * 0.28003 * 11 9 8 13 13 Si 1.86800 * 120.00407 * 180.28195 * 11 9 8 14 14 H 1.48498 * 109.47023 * 90.00250 * 13 11 9 15 15 H 1.48503 * 109.46997 * 210.00185 * 13 11 9 16 16 H 1.48492 * 109.46901 * 329.99721 * 13 11 9 17 17 C 1.34783 * 119.99657 * 179.97438 * 2 1 3 18 18 O 1.21516 * 119.99814 * 185.06188 * 17 2 1 19 19 C 1.48144 * 120.00049 * 5.06356 * 17 2 1 20 20 C 1.39817 * 120.92349 * 20.22055 * 19 17 2 21 21 C 1.38154 * 119.00254 * 179.79519 * 20 19 17 22 22 N 1.31809 * 120.89248 * 0.49840 * 21 20 19 23 23 C 1.31806 * 122.05167 * 359.73089 * 22 21 20 24 24 C 1.38146 * 120.89820 * 0.02895 * 23 22 21 25 25 H 1.08997 * 109.46998 * 84.62879 * 1 2 3 26 26 H 1.08994 * 109.47579 * 204.63278 * 1 2 3 27 27 H 1.09001 * 109.47070 * 324.63634 * 1 2 3 28 28 H 1.08997 * 109.46725 * 334.95707 * 3 2 1 29 29 H 1.09000 * 109.46965 * 214.95333 * 3 2 1 30 30 H 1.08999 * 114.32481 * 105.66038 * 6 4 3 31 31 H 1.09002 * 114.19357 * 332.91945 * 6 4 3 32 32 H 1.09009 * 113.45959 * 271.11716 * 7 6 4 33 33 H 1.08994 * 113.52435 * 140.68899 * 7 6 4 34 34 H 0.97003 * 120.00302 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.50139 * 0.02562 * 20 19 17 36 36 H 1.08000 * 119.55296 * 180.22957 * 21 20 19 37 37 H 1.08005 * 119.55231 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.50121 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5605 1.6480 1.4371 5 1 2.9511 0.8068 2.0098 6 6 1.4508 2.4170 2.1619 7 6 2.6252 3.2253 2.7310 8 7 3.3922 2.8573 1.5314 9 6 4.4231 3.4032 0.8143 10 1 4.8527 2.8589 -0.0137 11 6 4.9121 4.6588 1.1479 12 7 4.3885 5.3222 2.1569 13 14 6.3133 5.4069 0.1648 14 1 5.7593 6.1964 -0.9644 15 1 7.1153 6.2956 1.0436 16 1 7.1790 4.3236 -0.3662 17 6 2.1388 -1.1673 0.0005 18 8 3.3504 -1.1693 0.0934 19 6 1.4024 -2.4478 -0.1121 20 6 0.1041 -2.4868 -0.6297 21 6 -0.5444 -3.7033 -0.7208 22 7 0.0409 -4.8139 -0.3190 23 6 1.2612 -4.8209 0.1789 24 6 1.9840 -3.6500 0.3016 25 1 -0.3633 0.0962 -1.0231 26 1 -0.3634 -0.9341 0.4283 27 1 -0.3633 0.8381 0.5948 28 1 1.5729 2.0489 -0.4350 29 1 3.1087 1.1621 -0.5888 30 1 0.9100 1.8309 2.9049 31 1 0.7960 2.9850 1.5011 32 1 3.0331 2.8084 3.6519 33 1 2.4223 4.2936 2.8057 34 1 4.7304 6.1994 2.3903 35 1 -0.3831 -1.5801 -0.9568 36 1 -1.5460 -3.7443 -1.1226 37 1 1.7021 -5.7547 0.4954 38 1 2.9834 -3.6631 0.7109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085455468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = 68.606510 kcal Electronic energy + Delta-G solvation = -20996.733719 eV Core-core repulsion = 17841.694608 eV Total energy + Delta-G solvation = -3155.039110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.88178 -40.44809 -39.52762 -36.81543 -34.37948 -33.74099 -32.33037 -29.96440 -29.86581 -27.97667 -25.54699 -25.40474 -24.38195 -23.58352 -21.20981 -20.86722 -18.89325 -18.45935 -17.93213 -17.12792 -17.04081 -16.82738 -16.22337 -16.15888 -15.72578 -15.41652 -14.84211 -14.70138 -14.59906 -14.29179 -14.05003 -13.73825 -13.47230 -13.18375 -12.97181 -12.68413 -12.54549 -12.26536 -12.21298 -11.81972 -11.66183 -11.45519 -11.24461 -10.91208 -10.86061 -10.41479 -10.10031 -9.69650 -8.93357 -7.91983 -5.26974 -0.30744 0.11230 1.42389 1.44727 1.53327 1.70950 1.86028 2.45773 2.83544 3.27385 3.27991 3.45128 3.54532 3.78222 3.86496 3.94672 4.05480 4.16709 4.26298 4.27578 4.48586 4.55917 4.60647 4.74264 4.79852 4.83243 4.88840 4.90131 4.97601 5.04902 5.08103 5.21146 5.38602 5.52895 5.63475 5.70975 5.93930 6.28498 6.89867 6.92136 6.98883 7.58011 8.59033 9.24276 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.003975 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.019024 B = 7041.642812 C = 7411.471778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.595 5.595 3 C 0.132 3.868 4 C 0.134 3.866 5 H 0.021 0.979 6 C -0.126 4.126 7 C 0.137 3.863 8 N -0.630 5.630 9 C -0.227 4.227 10 H 0.073 0.927 11 C -0.062 4.062 12 N -0.950 5.950 13 Si 0.977 3.023 14 H -0.278 1.278 15 H -0.292 1.292 16 H -0.277 1.277 17 C 0.542 3.458 18 O -0.581 6.581 19 C -0.098 4.098 20 C -0.152 4.152 21 C 0.097 3.903 22 N -0.490 5.490 23 C 0.095 3.905 24 C -0.134 4.134 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.007 0.993 33 H 0.050 0.950 34 H 0.249 0.751 35 H 0.192 0.808 36 H 0.199 0.801 37 H 0.185 0.815 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 -16.286 -5.556 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.326 5.326 3 C 0.008 3.992 4 C 0.027 3.973 5 H 0.039 0.961 6 C -0.164 4.164 7 C 0.012 3.988 8 N -0.356 5.356 9 C -0.356 4.356 10 H 0.091 0.909 11 C -0.255 4.255 12 N -0.598 5.598 13 Si 0.805 3.195 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.331 3.669 18 O -0.462 6.462 19 C -0.109 4.109 20 C -0.171 4.171 21 C -0.060 4.060 22 N -0.200 5.200 23 C -0.060 4.060 24 C -0.155 4.155 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.209 0.791 36 H 0.216 0.784 37 H 0.202 0.798 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.737 -16.789 -5.667 23.699 hybrid contribution 2.167 1.466 0.122 2.619 sum -13.570 -15.323 -5.545 21.206 Atomic orbital electron populations 1.22968 0.76539 1.05728 1.04168 1.47801 1.08915 1.04568 1.71273 1.21533 0.96310 0.84322 0.96991 1.22406 0.90408 0.89577 0.94942 0.96103 1.23456 0.95102 0.97994 0.99867 1.22143 0.89233 0.98867 0.88594 1.46017 1.38893 1.22081 1.28621 1.19186 1.08697 0.98459 1.09210 0.90871 1.25584 1.02683 0.97421 0.99853 1.70005 1.45156 1.13816 1.30851 0.85113 0.78703 0.77999 0.77726 1.20416 1.21830 1.20206 1.18896 0.86733 0.84754 0.76524 1.90798 1.16156 1.87760 1.51441 1.20301 0.96125 0.92800 1.01717 1.23600 0.92890 1.02837 0.97797 1.23451 1.01327 0.86453 0.94790 1.67625 1.11061 1.32185 1.09093 1.23084 0.89900 0.98149 0.94901 1.22390 1.01582 0.92664 0.98834 0.88631 0.87693 0.89321 0.87960 0.93799 0.89208 0.88455 0.97556 0.93184 0.94176 0.79139 0.78411 0.79838 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 8.66 127.77 1.11 1.77 16 2 N -0.59 -16.11 2.88 -849.86 -2.45 -18.56 16 3 C 0.13 4.70 5.28 86.38 0.46 5.16 16 4 C 0.13 5.63 4.28 41.70 0.18 5.81 16 5 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 6 C -0.13 -4.44 7.87 30.84 0.24 -4.20 16 7 C 0.14 6.68 7.52 83.18 0.63 7.30 16 8 N -0.63 -33.60 3.65 -714.40 -2.61 -36.21 16 9 C -0.23 -13.34 10.55 84.03 0.89 -12.45 16 10 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 11 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 12 N -0.95 -58.35 11.42 21.65 0.25 -58.10 16 13 Si 0.98 47.23 29.55 68.60 2.03 49.25 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 C 0.54 17.13 7.53 86.87 0.65 17.78 16 18 O -0.58 -24.79 16.34 -3.77 -0.06 -24.85 16 19 C -0.10 -2.29 5.62 -19.88 -0.11 -2.40 16 20 C -0.15 -2.22 7.69 22.63 0.17 -2.05 16 21 C 0.10 1.27 11.17 84.68 0.95 2.22 16 22 N -0.49 -8.81 10.33 -196.01 -2.03 -10.84 16 23 C 0.10 1.71 11.17 84.67 0.95 2.66 16 24 C -0.13 -3.01 9.68 22.63 0.22 -2.79 16 25 H 0.10 0.81 7.25 -2.39 -0.02 0.79 16 26 H 0.11 1.15 4.89 -2.39 -0.01 1.13 16 27 H 0.09 1.15 7.98 -2.39 -0.02 1.13 16 28 H 0.10 3.22 7.77 -2.39 -0.02 3.20 16 29 H 0.04 1.88 7.65 -2.39 -0.02 1.87 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.10 3.07 7.93 -2.39 -0.02 3.05 16 32 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.05 2.69 6.92 -2.39 -0.02 2.67 16 34 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.19 1.60 4.16 -2.91 -0.01 1.59 16 36 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.13 3.23 7.87 -2.91 -0.02 3.21 16 Total: -1.00 -80.62 317.16 2.99 -77.63 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.07 Total: 6.06 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.79 Total: 15.62 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -6.84 Total: -123.71 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -80.62 2.99 -77.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085455468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.238 kcal (2) G-P(sol) polarization free energy of solvation -80.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds