Wall clock time and date at job start Mon Mar 30 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47242 * 2 1 4 4 C 1.50703 * 109.47189 * 119.99138 * 2 1 3 5 5 H 1.08003 * 120.00170 * 120.00065 * 4 2 1 6 6 C 1.37874 * 120.00460 * 300.00470 * 4 2 1 7 7 N 1.31519 * 119.99532 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00592 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46711 * 59.99625 * 8 6 4 10 10 H 1.48501 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46787 * 300.00072 * 8 6 4 12 12 N 1.46494 * 109.47542 * 239.99205 * 2 1 3 13 13 C 1.46493 * 120.00263 * 300.00304 * 12 2 1 14 14 C 1.34785 * 119.99973 * 119.99859 * 12 2 1 15 15 O 1.21505 * 119.99841 * 4.78934 * 14 12 2 16 16 C 1.48231 * 119.99874 * 184.79166 * 14 12 2 17 17 C 1.36492 * 120.34880 * 279.73689 * 16 14 12 18 18 C 1.51467 * 132.03897 * 359.97438 * 17 16 14 19 19 C 1.54037 * 103.05439 * 179.97438 * 18 17 16 20 20 N 1.46437 * 105.13077 * 0.07859 * 19 18 17 21 21 C 1.31189 * 111.73625 * 359.94397 * 20 19 18 22 22 N 1.38254 * 129.20446 * 180.02562 * 21 20 19 23 23 C 1.36136 * 120.85949 * 179.97438 * 22 21 20 24 24 C 1.34744 * 121.28122 * 0.02765 * 23 22 21 25 25 H 1.08995 * 109.47302 * 300.00475 * 1 2 3 26 26 H 1.09002 * 109.47164 * 60.00680 * 1 2 3 27 27 H 1.09004 * 109.47249 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99863 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47228 * 274.67110 * 13 12 2 30 30 H 1.09004 * 109.47197 * 34.66806 * 13 12 2 31 31 H 1.09002 * 109.47715 * 154.67100 * 13 12 2 32 32 H 1.08994 * 110.71005 * 61.61383 * 18 17 16 33 33 H 1.08995 * 110.75273 * 298.37753 * 18 17 16 34 34 H 1.08995 * 110.32839 * 241.13302 * 19 18 17 35 35 H 1.08996 * 110.32526 * 119.01598 * 19 18 17 36 36 H 0.96999 * 119.57229 * 359.96505 * 22 21 20 37 37 H 1.07999 * 119.35976 * 180.02562 * 23 22 21 38 38 H 1.08004 * 120.06419 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3213 -1.1199 4.0082 9 1 3.8063 -1.1204 4.0083 10 1 1.8258 -0.4200 5.2206 11 1 1.8258 -2.5198 4.0080 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4277 14 6 2.7933 -0.0358 -2.0833 15 8 3.1586 1.0992 -1.8492 16 6 3.1997 -0.7001 -3.3445 17 6 4.2377 -1.5863 -3.3538 18 6 5.1530 -2.0879 -2.2561 19 6 6.0819 -3.0673 -2.9981 20 7 5.6344 -3.0368 -4.3921 21 6 4.6233 -2.2180 -4.5599 22 7 3.9263 -1.9155 -5.7149 23 6 2.8921 -1.0304 -5.6948 24 6 2.5146 -0.4213 -4.5537 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 0.7088 1.1617 3.4843 29 1 2.3691 -2.7375 -0.9017 30 1 0.6562 -2.2795 -1.0579 31 1 1.7049 -2.3066 -2.4959 32 1 4.5826 -2.6071 -1.4860 33 1 5.7251 -1.2665 -1.8248 34 1 5.9773 -4.0721 -2.5887 35 1 7.1175 -2.7355 -2.9255 36 1 4.1774 -2.3392 -6.5505 37 1 2.3640 -0.8121 -6.6113 38 1 1.6915 0.2780 -4.5604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122178626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:39 Heat of formation + Delta-G solvation = 31.025261 kcal Electronic energy + Delta-G solvation = -21602.777166 eV Core-core repulsion = 18446.108410 eV Total energy + Delta-G solvation = -3156.668756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95725 -38.82636 -36.92608 -35.36714 -33.70759 -32.61382 -29.75795 -29.13912 -29.02437 -26.23954 -25.29305 -24.83886 -22.37378 -22.03825 -20.78923 -18.58277 -17.61795 -17.00480 -16.71887 -16.25086 -15.81209 -15.42337 -15.20741 -14.46776 -14.09154 -13.70710 -13.53311 -13.07010 -12.90660 -12.64103 -12.34130 -11.95422 -11.91158 -11.60278 -11.53922 -11.50663 -11.07603 -10.82658 -10.75291 -10.32968 -10.29800 -10.19247 -9.91817 -9.64470 -9.20196 -8.97525 -8.44031 -7.65009 -7.15944 -6.08332 -4.16258 0.84020 1.82434 2.66602 3.20916 3.27918 3.32939 3.35262 3.43229 3.85636 4.34298 4.39813 4.70818 4.81766 4.95408 5.08989 5.22697 5.29517 5.34351 5.63638 5.72813 5.81754 6.01781 6.05041 6.10956 6.12855 6.20727 6.33343 6.41808 6.73075 6.78187 6.82348 7.01684 7.03541 7.37444 7.47281 7.69084 7.85235 7.98176 8.16412 8.45451 8.78475 8.95840 9.50044 10.97034 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.005531 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.949725 B = 5060.967911 C = 5797.496651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.581 5.581 13 C 0.089 3.911 14 C 0.545 3.455 15 O -0.540 6.540 16 C -0.014 4.014 17 C -0.161 4.161 18 C -0.105 4.105 19 C 0.054 3.946 20 N -0.594 5.594 21 C 0.382 3.618 22 N -0.596 5.596 23 C 0.132 3.868 24 C -0.202 4.202 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.416 0.584 37 H 0.169 0.831 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 -6.621 -15.184 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.055 4.055 14 C 0.330 3.670 15 O -0.419 6.419 16 C -0.023 4.023 17 C -0.168 4.168 18 C -0.144 4.144 19 C -0.077 4.077 20 N -0.321 5.321 21 C 0.113 3.887 22 N -0.211 5.211 23 C 0.006 3.994 24 C -0.229 4.229 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.186 0.814 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.428 -6.593 -15.258 16.798 hybrid contribution -0.040 -0.197 1.192 1.208 sum 2.388 -6.790 -14.067 15.801 Atomic orbital electron populations 1.22098 0.98033 0.99482 1.00934 1.18993 0.90916 0.94508 0.79819 0.91827 1.21246 1.31917 1.12990 0.90198 0.92316 1.24881 0.94928 0.94960 0.98935 1.69865 1.36309 1.22554 1.23897 0.86553 0.79277 0.79572 0.81983 1.20219 1.21154 1.20237 1.48216 1.48103 1.11624 1.23147 1.21552 1.01555 0.82983 0.99430 1.18347 0.79438 0.86015 0.83160 1.90763 1.55310 1.18424 1.77362 1.19525 0.94160 0.93428 0.95163 1.21290 0.99701 1.00215 0.95554 1.21496 0.96472 0.99872 0.96528 1.22574 0.98802 0.99024 0.87274 1.73983 1.14539 1.24520 1.19033 1.19573 0.91285 0.92642 0.85191 1.40964 1.29679 1.40812 1.09665 1.21490 0.88261 0.89790 0.99809 1.20348 1.05314 1.06886 0.90357 0.88681 0.96902 0.95006 0.92609 0.93156 0.90964 0.92873 0.89039 0.89329 0.90134 0.90245 0.74832 0.81383 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.94 37.16 0.33 -3.11 16 2 C 0.26 6.51 2.63 -69.09 -0.18 6.33 16 3 H 0.06 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.52 -14.06 8.37 -34.44 -0.29 -14.35 16 5 H 0.06 1.55 7.51 -52.48 -0.39 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.58 -12.38 2.75 -176.24 -0.49 -12.86 16 13 C 0.09 1.54 9.51 59.84 0.57 2.11 16 14 C 0.55 11.54 6.91 -12.15 -0.08 11.46 16 15 O -0.54 -13.69 16.44 5.36 0.09 -13.61 16 16 C -0.01 -0.23 3.75 -105.08 -0.39 -0.62 16 17 C -0.16 -2.57 5.85 -103.63 -0.61 -3.17 16 18 C -0.11 -1.63 6.80 -26.96 -0.18 -1.81 16 19 C 0.05 0.75 7.96 -3.53 -0.03 0.73 16 20 N -0.59 -8.93 11.60 -59.71 -0.69 -9.62 16 21 C 0.38 5.40 8.18 -155.86 -1.28 4.13 16 22 N -0.60 -5.95 5.39 -12.14 -0.07 -6.02 16 23 C 0.13 1.15 11.14 -16.88 -0.19 0.97 16 24 C -0.20 -2.54 9.77 -39.48 -0.39 -2.92 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.68 6.69 -51.93 -0.35 0.34 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 0.86 7.59 -51.93 -0.39 0.47 16 30 H 0.07 1.23 6.45 -51.93 -0.33 0.89 16 31 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 32 H 0.09 1.43 7.74 -51.93 -0.40 1.02 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.42 2.90 8.92 -40.82 -0.36 2.54 16 37 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -33.22 314.93 -8.53 -41.75 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.92 Total: 2.54 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.81 Total: 1.39 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.62 Total: -52.77 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.22 -8.53 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122178626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.779 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds