Wall clock time and date at job start Mon Mar 30 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.22258 * 2 1 4 4 C 1.52365 * 109.26745 * 240.71108 * 2 1 3 5 5 N 1.47214 * 108.33707 * 192.54689 * 4 2 1 6 6 C 1.34775 * 121.29419 * 244.12136 * 5 4 2 7 7 O 1.21279 * 120.00300 * 359.71097 * 6 5 4 8 8 C 1.50703 * 119.99773 * 179.71497 * 6 5 4 9 9 C 1.53006 * 109.47126 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.46792 * 117.40807 * 63.84229 * 5 4 2 19 19 C 1.50519 * 109.49340 * 315.93285 * 18 5 4 20 20 C 1.38935 * 118.79459 * 191.54570 * 19 18 5 21 21 N 1.32221 * 119.23302 * 180.49556 * 20 19 18 22 22 C 1.31819 * 120.58213 * 0.09672 * 21 20 19 23 23 N 1.31576 * 121.72686 * 359.69599 * 22 21 20 24 24 C 1.32964 * 121.10640 * 359.97049 * 23 22 21 25 25 H 1.08997 * 109.47379 * 300.60149 * 1 2 3 26 26 H 1.09005 * 109.47337 * 60.59886 * 1 2 3 27 27 H 1.09006 * 109.47500 * 180.60183 * 1 2 3 28 28 H 1.08996 * 109.61081 * 72.81765 * 4 2 1 29 29 H 1.09009 * 109.61284 * 312.27362 * 4 2 1 30 30 H 1.09001 * 109.46980 * 59.99839 * 8 6 5 31 31 H 1.09001 * 109.47354 * 299.99360 * 8 6 5 32 32 H 1.08998 * 109.46509 * 60.00247 * 9 8 6 33 33 H 1.08993 * 109.46955 * 299.99807 * 9 8 6 34 34 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 35 35 H 1.09009 * 109.46577 * 75.93901 * 18 5 4 36 36 H 1.09001 * 109.47417 * 195.92642 * 18 5 4 37 37 H 1.07999 * 120.38643 * 0.47355 * 20 19 18 38 38 H 1.07995 * 119.13178 * 179.67682 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0292 0.0000 4 6 2.0327 -0.7036 -1.2544 5 7 3.4732 -0.9621 -1.0947 6 6 4.3824 -0.3818 -1.9028 7 8 4.0192 0.3658 -2.7860 8 6 5.8504 -0.6621 -1.7090 9 6 6.6596 0.1145 -2.7497 10 6 8.1276 -0.1653 -2.5556 11 1 8.4510 -0.8308 -1.7689 12 6 9.0577 0.4276 -3.3828 13 7 8.6639 1.2376 -4.3411 14 14 10.8773 0.0802 -3.1426 15 1 11.6628 0.8341 -4.1526 16 1 11.1291 -1.3744 -3.3041 17 1 11.2868 0.5051 -1.7799 18 6 3.8811 -1.8715 -0.0170 19 6 3.1124 -1.5435 1.2349 20 6 3.5125 -2.1169 2.4354 21 7 2.8374 -1.8426 3.5387 22 6 1.7951 -1.0363 3.5042 23 7 1.3923 -0.4737 2.3850 24 6 2.0252 -0.6972 1.2373 25 1 -0.3634 0.5231 0.8845 26 1 -0.3634 0.5045 -0.8953 27 1 -0.3634 -1.0276 0.0108 28 1 1.8671 -0.0660 -2.1228 29 1 1.5014 -1.6468 -1.3828 30 1 6.0352 -1.7297 -1.8283 31 1 6.1508 -0.3509 -0.7085 32 1 6.4748 1.1821 -2.6307 33 1 6.3592 -0.1971 -3.7500 34 1 7.7190 1.4178 -4.4661 35 1 3.6735 -2.9002 -0.3117 36 1 4.9484 -1.7560 0.1714 37 1 4.3648 -2.7794 2.4671 38 1 1.2575 -0.8326 4.4184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153035560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:47 Heat of formation + Delta-G solvation = -1.529499 kcal Electronic energy + Delta-G solvation = -20942.360773 eV Core-core repulsion = 17784.280337 eV Total energy + Delta-G solvation = -3158.080436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67900 -39.61632 -37.02451 -35.01372 -33.87131 -32.66834 -32.31188 -30.86358 -27.38078 -26.72506 -25.18174 -24.58615 -22.99132 -22.05042 -20.93061 -18.96894 -17.83514 -17.48510 -16.82543 -16.31385 -15.91863 -15.65174 -15.29086 -14.56464 -14.34384 -14.06784 -13.76403 -13.63537 -13.48304 -13.19823 -12.50324 -12.37231 -12.23611 -12.04288 -11.81861 -11.57392 -11.44606 -11.14509 -10.85635 -10.72080 -10.17957 -10.16806 -9.96854 -9.58036 -9.46551 -9.37716 -8.72602 -8.57335 -8.31644 -6.34814 -4.05539 0.60519 0.76712 2.91270 2.97512 3.43456 3.45636 3.45759 3.64562 3.73827 3.92560 4.07787 4.31530 4.48667 4.55374 4.73756 4.81097 4.99896 5.06595 5.11064 5.21086 5.28656 5.40437 5.42945 5.54016 5.59547 5.75642 5.83642 5.95815 5.98117 6.00375 6.13498 6.39689 6.64691 6.69532 7.46223 7.47597 7.51304 7.80714 8.14345 8.44088 8.49714 8.88359 9.68282 11.06119 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.004091 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.868754 B = 6843.024828 C = 7685.015230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 H 0.100 0.900 4 C 0.115 3.885 5 N -0.628 5.628 6 C 0.518 3.482 7 O -0.529 6.529 8 C -0.122 4.122 9 C 0.024 3.976 10 C -0.610 4.610 11 H 0.049 0.951 12 C 0.016 3.984 13 N -0.910 5.910 14 Si 1.070 2.930 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.288 1.288 18 C 0.158 3.842 19 C -0.198 4.198 20 C 0.158 3.842 21 N -0.521 5.521 22 C 0.289 3.711 23 N -0.517 5.517 24 C 0.194 3.806 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.272 0.728 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.173 0.827 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.476 -7.922 13.527 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 H 0.118 0.882 4 C -0.009 4.009 5 N -0.363 5.363 6 C 0.309 3.691 7 O -0.404 6.404 8 C -0.162 4.162 9 C -0.013 4.013 10 C -0.648 4.648 11 H 0.067 0.933 12 C -0.188 4.188 13 N -0.545 5.545 14 Si 0.898 3.102 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.215 1.215 18 C 0.034 3.966 19 C -0.203 4.203 20 C -0.010 4.010 21 N -0.235 5.235 22 C 0.001 3.999 23 N -0.231 5.231 24 C 0.050 3.950 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.190 0.810 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.640 -6.939 13.264 20.938 hybrid contribution -1.136 -0.643 0.209 1.322 sum -15.776 -7.581 13.473 22.088 Atomic orbital electron populations 1.21659 0.92140 1.02329 1.02999 1.20337 0.97620 1.00116 0.90020 0.88229 1.21549 0.80918 1.00782 0.97618 1.48284 1.06535 1.48152 1.33373 1.21586 0.89112 0.78430 0.79998 1.90664 1.81437 1.35727 1.32546 1.21778 0.88304 1.02896 1.03241 1.19031 0.94235 0.95016 0.93061 1.22006 0.91518 1.31944 1.19314 0.93253 1.25842 1.05962 0.93822 0.93218 1.70739 1.19348 1.33705 1.30746 0.83544 0.74692 0.76021 0.75977 1.20746 1.21434 1.21476 1.20338 0.99465 0.93957 0.82862 1.21490 0.99200 1.01232 0.98404 1.23209 0.96797 0.94280 0.86669 1.68467 1.08268 1.15858 1.30876 1.24919 0.90355 0.88503 0.96097 1.68388 1.31414 1.24255 0.99008 1.21183 0.89250 0.90680 0.93922 0.90813 0.91718 0.92725 0.87684 0.90988 0.89837 0.90041 0.96740 0.96632 0.91730 0.89525 0.87397 0.80991 0.78812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.79 37.16 0.33 -0.87 16 2 C -0.06 -0.67 3.07 -92.24 -0.28 -0.96 16 3 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.11 1.36 5.70 -3.98 -0.02 1.34 16 5 N -0.63 -8.70 2.95 -174.73 -0.52 -9.22 16 6 C 0.52 9.61 7.72 -10.98 -0.08 9.53 16 7 O -0.53 -11.90 15.46 5.56 0.09 -11.81 16 8 C -0.12 -2.40 4.06 -27.88 -0.11 -2.52 16 9 C 0.02 0.63 3.57 -27.88 -0.10 0.53 16 10 C -0.61 -17.19 9.11 -34.44 -0.31 -17.50 16 11 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 12 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 13 N -0.91 -28.48 13.65 55.43 0.76 -27.72 16 14 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.16 1.66 6.13 -5.12 -0.03 1.63 16 19 C -0.20 -2.12 5.82 -104.62 -0.61 -2.73 16 20 C 0.16 1.53 10.94 -17.13 -0.19 1.35 16 21 N -0.52 -5.64 10.45 -14.57 -0.15 -5.79 16 22 C 0.29 2.95 12.28 -92.32 -1.13 1.82 16 23 N -0.52 -5.94 9.37 -11.00 -0.10 -6.04 16 24 C 0.19 2.26 6.24 -82.41 -0.51 1.74 16 25 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 1.39 7.07 -51.93 -0.37 1.02 16 29 H 0.07 0.72 8.08 -51.92 -0.42 0.30 16 30 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 31 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 32 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 33 H 0.02 0.44 7.97 -51.93 -0.41 0.02 16 34 H 0.27 8.64 7.22 -40.82 -0.29 8.34 16 35 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.11 1.08 6.20 -51.93 -0.32 0.76 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -35.05 316.31 -8.59 -43.64 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.18 Total: -1.59 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.16 Total: -6.25 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.01 Total: -48.77 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.05 -8.59 -43.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153035560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.114 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds