Wall clock time and date at job start Mon Mar 30 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.22258 * 2 1 4 4 C 1.52365 * 109.26745 * 240.71108 * 2 1 3 5 5 N 1.47214 * 108.33707 * 192.54689 * 4 2 1 6 6 C 1.34775 * 121.29419 * 244.12136 * 5 4 2 7 7 O 1.21279 * 120.00300 * 359.71097 * 6 5 4 8 8 C 1.50703 * 119.99773 * 179.71497 * 6 5 4 9 9 C 1.53006 * 109.47126 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.46792 * 117.40807 * 63.84229 * 5 4 2 19 19 C 1.50519 * 109.49340 * 315.93285 * 18 5 4 20 20 C 1.38935 * 118.79459 * 191.54570 * 19 18 5 21 21 N 1.32221 * 119.23302 * 180.49556 * 20 19 18 22 22 C 1.31819 * 120.58213 * 0.09672 * 21 20 19 23 23 N 1.31576 * 121.72686 * 359.69599 * 22 21 20 24 24 C 1.32964 * 121.10640 * 359.97049 * 23 22 21 25 25 H 1.08997 * 109.47379 * 300.60149 * 1 2 3 26 26 H 1.09005 * 109.47337 * 60.59886 * 1 2 3 27 27 H 1.09006 * 109.47500 * 180.60183 * 1 2 3 28 28 H 1.08996 * 109.61081 * 72.81765 * 4 2 1 29 29 H 1.09009 * 109.61284 * 312.27362 * 4 2 1 30 30 H 1.09001 * 109.46980 * 59.99839 * 8 6 5 31 31 H 1.09001 * 109.47354 * 299.99360 * 8 6 5 32 32 H 1.08998 * 109.46509 * 60.00247 * 9 8 6 33 33 H 1.08993 * 109.46955 * 299.99807 * 9 8 6 34 34 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 35 35 H 1.09009 * 109.46577 * 75.93901 * 18 5 4 36 36 H 1.09001 * 109.47417 * 195.92642 * 18 5 4 37 37 H 1.07999 * 120.38643 * 0.47355 * 20 19 18 38 38 H 1.07995 * 119.13178 * 179.67682 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0292 0.0000 4 6 2.0327 -0.7036 -1.2544 5 7 3.4732 -0.9621 -1.0947 6 6 4.3824 -0.3818 -1.9028 7 8 4.0192 0.3658 -2.7860 8 6 5.8504 -0.6621 -1.7090 9 6 6.6596 0.1145 -2.7497 10 6 8.1276 -0.1653 -2.5556 11 1 8.4510 -0.8308 -1.7689 12 6 9.0577 0.4276 -3.3828 13 7 8.6639 1.2376 -4.3411 14 14 10.8773 0.0802 -3.1426 15 1 11.6628 0.8341 -4.1526 16 1 11.1291 -1.3744 -3.3041 17 1 11.2868 0.5051 -1.7799 18 6 3.8811 -1.8715 -0.0170 19 6 3.1124 -1.5435 1.2349 20 6 3.5125 -2.1169 2.4354 21 7 2.8374 -1.8426 3.5387 22 6 1.7951 -1.0363 3.5042 23 7 1.3923 -0.4737 2.3850 24 6 2.0252 -0.6972 1.2373 25 1 -0.3634 0.5231 0.8845 26 1 -0.3634 0.5045 -0.8953 27 1 -0.3634 -1.0276 0.0108 28 1 1.8671 -0.0660 -2.1228 29 1 1.5014 -1.6468 -1.3828 30 1 6.0352 -1.7297 -1.8283 31 1 6.1508 -0.3509 -0.7085 32 1 6.4748 1.1821 -2.6307 33 1 6.3592 -0.1971 -3.7500 34 1 7.7190 1.4178 -4.4661 35 1 3.6735 -2.9002 -0.3117 36 1 4.9484 -1.7560 0.1714 37 1 4.3648 -2.7794 2.4671 38 1 1.2575 -0.8326 4.4184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153035560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:46 Heat of formation + Delta-G solvation = -24.009089 kcal Electronic energy + Delta-G solvation = -20943.335561 eV Core-core repulsion = 17784.280337 eV Total energy + Delta-G solvation = -3159.055224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.52055 -40.91017 -38.15747 -36.03608 -35.85800 -33.66460 -33.21957 -32.67177 -28.46502 -27.87762 -26.51020 -25.78975 -24.05264 -23.64580 -22.02499 -20.15307 -19.18637 -18.65449 -18.22412 -17.42053 -17.23618 -16.86803 -16.25522 -15.60967 -15.55569 -15.43867 -15.22782 -14.79145 -14.51729 -14.14170 -14.09435 -13.90624 -13.61695 -13.14398 -13.03474 -12.66807 -12.60084 -12.39387 -12.04785 -12.03519 -12.01964 -11.84355 -11.55156 -11.01274 -10.66878 -10.53963 -10.35411 -10.26841 -9.84898 -8.67648 -6.39840 -0.17771 -0.01642 1.51324 1.55881 1.65599 1.78926 1.83735 2.61025 2.67709 2.93397 3.18725 3.22324 3.29683 3.47612 3.56820 3.80801 3.89731 3.96539 4.25136 4.27390 4.33220 4.38880 4.40299 4.52156 4.53387 4.67867 4.76274 4.88394 4.94376 5.01711 5.19549 5.27925 5.34765 5.36960 5.42007 5.90494 5.94230 6.15498 6.25149 6.52784 7.03402 7.07482 7.46358 8.72333 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.004091 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.868754 B = 6843.024828 C = 7685.015230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.056 4.056 3 H 0.079 0.921 4 C 0.114 3.886 5 N -0.617 5.617 6 C 0.518 3.482 7 O -0.583 6.583 8 C -0.111 4.111 9 C 0.026 3.974 10 C -0.617 4.617 11 H 0.070 0.930 12 C -0.045 4.045 13 N -0.941 5.941 14 Si 1.123 2.877 15 H -0.290 1.290 16 H -0.262 1.262 17 H -0.265 1.265 18 C 0.154 3.846 19 C -0.204 4.204 20 C 0.163 3.837 21 N -0.535 5.535 22 C 0.285 3.715 23 N -0.532 5.532 24 C 0.176 3.824 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.102 0.898 32 H -0.024 1.024 33 H -0.019 1.019 34 H 0.251 0.749 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.205 0.795 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 -10.360 15.911 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 H 0.097 0.903 4 C -0.008 4.008 5 N -0.350 5.350 6 C 0.309 3.691 7 O -0.462 6.462 8 C -0.150 4.150 9 C -0.011 4.011 10 C -0.655 4.655 11 H 0.088 0.912 12 C -0.242 4.242 13 N -0.579 5.579 14 Si 0.943 3.057 15 H -0.216 1.216 16 H -0.187 1.187 17 H -0.190 1.190 18 C 0.031 3.969 19 C -0.209 4.209 20 C -0.004 4.004 21 N -0.248 5.248 22 C -0.003 4.003 23 N -0.245 5.245 24 C 0.032 3.968 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.120 0.880 32 H -0.006 1.006 33 H -0.001 1.001 34 H 0.061 0.939 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.222 0.778 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.252 -9.421 15.711 23.210 hybrid contribution -1.361 0.094 -0.451 1.437 sum -15.613 -9.327 15.260 23.741 Atomic orbital electron populations 1.21596 0.90520 1.02924 1.03236 1.20236 0.98928 0.98779 0.89685 0.90340 1.21682 0.79819 1.01890 0.97428 1.48181 1.06742 1.47207 1.32848 1.21304 0.89383 0.78291 0.80153 1.90649 1.82087 1.38333 1.35151 1.21552 0.88383 1.03329 1.01761 1.18873 0.95063 0.93665 0.93538 1.22491 0.92322 1.31409 1.19233 0.91202 1.27627 1.11166 0.92929 0.92441 1.70899 1.17923 1.36132 1.32913 0.82887 0.68779 0.77256 0.76774 1.21580 1.18655 1.18980 1.20665 1.00019 0.94553 0.81658 1.21507 0.98975 1.01531 0.98845 1.23722 0.97081 0.93847 0.85787 1.68560 1.08658 1.16248 1.31330 1.25494 0.90318 0.87839 0.96612 1.68407 1.31923 1.24881 0.99330 1.21285 0.90040 0.91389 0.94079 0.91168 0.90902 0.91854 0.89581 0.88267 0.87077 0.88012 1.00559 1.00066 0.93941 0.86328 0.86441 0.77816 0.76255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.79 71.98 0.63 -1.47 16 2 C -0.06 -1.21 3.07 -11.84 -0.04 -1.24 16 3 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.11 2.63 5.70 86.03 0.49 3.12 16 5 N -0.62 -16.25 2.95 -825.11 -2.43 -18.68 16 6 C 0.52 19.29 7.72 87.66 0.68 19.97 16 7 O -0.58 -27.51 15.46 -3.03 -0.05 -27.55 16 8 C -0.11 -4.25 4.06 29.85 0.12 -4.13 16 9 C 0.03 1.42 3.57 29.85 0.11 1.52 16 10 C -0.62 -34.65 9.11 25.60 0.23 -34.42 16 11 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 12 C -0.05 -2.63 5.46 84.65 0.46 -2.17 16 13 N -0.94 -60.87 13.65 21.45 0.29 -60.58 16 14 Si 1.12 49.46 29.90 68.60 2.05 51.51 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 18 C 0.15 2.73 6.13 85.52 0.52 3.25 16 19 C -0.20 -3.78 5.82 -19.86 -0.12 -3.90 16 20 C 0.16 2.61 10.94 84.80 0.93 3.54 16 21 N -0.53 -10.06 10.45 -200.00 -2.09 -12.15 16 22 C 0.28 5.18 12.28 180.94 2.22 7.40 16 23 N -0.53 -11.33 9.37 -188.73 -1.77 -13.10 16 24 C 0.18 3.80 6.24 42.18 0.26 4.06 16 25 H 0.07 1.25 7.69 -2.39 -0.02 1.23 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 2.34 7.07 -2.39 -0.02 2.32 16 29 H 0.10 1.77 8.08 -2.38 -0.02 1.75 16 30 H 0.11 3.64 8.11 -2.39 -0.02 3.62 16 31 H 0.10 3.48 7.58 -2.39 -0.02 3.46 16 32 H -0.02 -1.46 7.97 -2.39 -0.02 -1.48 16 33 H -0.02 -1.15 7.97 -2.39 -0.02 -1.17 16 34 H 0.25 16.91 7.22 -92.71 -0.67 16.24 16 35 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.12 1.89 6.20 -2.39 -0.01 1.88 16 37 H 0.21 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.22 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -79.59 316.31 3.68 -75.91 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.16 Total: 9.11 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 6.51 Total: -4.46 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -6.00 Total: -104.51 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.51 kcal Total: -79.59 3.68 -75.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153035560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.902 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds