Wall clock time and date at job start Mon Mar 30 2020 02:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46764 * 124.34506 * 2 1 4 4 C 1.54485 * 105.54732 * 197.07370 * 3 2 1 5 5 H 1.08994 * 110.96975 * 92.69815 * 4 3 2 6 6 C 1.52999 * 110.96868 * 216.42611 * 4 3 2 7 7 N 1.46504 * 109.46844 * 184.99816 * 6 4 3 8 8 C 1.39087 * 119.99872 * 179.97438 * 7 6 4 9 9 C 1.38742 * 119.65812 * 0.02562 * 8 7 6 10 10 C 1.40773 * 118.67151 * 179.97438 * 9 8 7 11 11 C 1.41551 * 120.99803 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99784 * 336.13253 * 11 10 9 13 13 C 1.40020 * 120.00233 * 156.12376 * 11 10 9 14 14 N 1.30751 * 120.00270 * 343.17964 * 13 11 10 15 15 Si 1.86805 * 120.00346 * 163.17485 * 13 11 10 16 16 H 1.48502 * 109.46871 * 60.00143 * 15 13 11 17 17 H 1.48496 * 109.47548 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46860 * 300.00339 * 15 13 11 19 19 C 1.41189 * 118.01484 * 0.02562 * 10 9 8 20 20 C 1.36562 * 119.14098 * 359.97438 * 19 10 9 21 21 N 1.32091 * 121.26997 * 359.73250 * 20 19 10 22 22 C 1.54634 * 101.76487 * 334.53957 * 4 3 2 23 23 C 1.34615 * 124.46805 * 180.02562 * 2 1 3 24 24 O 1.21278 * 124.91230 * 359.55912 * 23 2 1 25 25 H 1.09008 * 109.46734 * 90.00259 * 1 2 3 26 26 H 1.08998 * 109.47507 * 210.00054 * 1 2 3 27 27 H 1.09001 * 109.47369 * 330.00251 * 1 2 3 28 28 H 1.09007 * 110.24840 * 78.03396 * 3 2 1 29 29 H 1.08998 * 110.25092 * 316.11636 * 3 2 1 30 30 H 1.08997 * 109.47071 * 304.99735 * 6 4 3 31 31 H 1.09002 * 109.47493 * 64.99853 * 6 4 3 32 32 H 0.97000 * 120.00247 * 0.02562 * 7 6 4 33 33 H 1.08001 * 120.66796 * 359.97438 * 9 8 7 34 34 H 0.96994 * 120.00613 * 179.97438 * 14 13 11 35 35 H 1.07996 * 120.43404 * 179.97438 * 19 10 9 36 36 H 1.08002 * 119.36607 * 180.02562 * 20 19 10 37 37 H 1.08999 * 110.48585 * 143.47171 * 22 4 3 38 38 H 1.09000 * 110.48900 * 266.12372 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7013 0.7510 -0.4370 5 1 3.8263 0.8481 -1.5154 6 6 4.7877 1.5277 0.3096 7 7 6.1036 1.1516 -0.2133 8 6 7.2528 1.7313 0.3135 9 6 7.1449 2.6647 1.3344 10 6 8.3216 3.2380 1.8525 11 6 8.2687 4.1954 2.8938 12 1 7.3729 4.7794 3.0454 13 6 9.3776 4.3852 3.7274 14 7 10.3232 3.4834 3.7731 15 14 9.5063 5.9271 4.7741 16 1 8.3465 5.9957 5.6990 17 1 10.7654 5.8879 5.5605 18 1 9.5096 7.1236 3.8946 19 6 9.5561 2.8303 1.3019 20 6 9.5632 1.9045 0.2981 21 7 8.4400 1.3822 -0.1609 22 6 3.6927 -0.7357 -0.0116 23 6 2.2269 -1.1098 -0.0005 24 8 1.7998 -2.2449 0.0066 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 2.3308 1.6429 1.0005 29 1 1.8973 1.9391 -0.7089 30 1 4.6324 2.5972 0.1674 31 1 4.7380 1.2915 1.3725 32 1 6.1732 0.4987 -0.9273 33 1 6.1776 2.9458 1.7237 34 1 11.0916 3.6150 4.3502 35 1 10.4828 3.2453 1.6697 36 1 10.5055 1.5897 -0.1255 37 1 4.2358 -1.3428 -0.7359 38 1 4.1233 -0.8504 0.9831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157908374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:29 Heat of formation + Delta-G solvation = -4.666389 kcal Electronic energy + Delta-G solvation = -20316.345132 eV Core-core repulsion = 17158.128671 eV Total energy + Delta-G solvation = -3158.216462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56870 -38.48642 -36.95222 -35.29488 -34.00507 -32.54637 -30.62735 -28.89631 -27.78388 -26.79438 -25.90151 -24.58154 -21.73199 -20.91832 -20.47799 -19.70812 -17.65409 -16.97691 -16.64272 -15.83402 -15.44252 -15.12579 -14.89219 -14.61880 -14.09444 -13.85580 -13.69190 -13.38120 -13.19840 -12.98032 -12.61142 -12.55713 -12.43052 -12.13980 -11.81646 -11.47234 -11.33240 -11.19575 -11.06594 -10.85150 -10.32979 -9.90985 -9.83474 -9.43098 -8.97571 -8.93892 -7.98447 -7.91793 -6.85120 -6.50085 -4.57628 2.45161 2.79750 2.79813 3.01844 3.03712 3.05810 3.34279 3.83088 3.88064 4.17168 4.36783 4.63187 4.69721 4.82111 4.98931 5.10303 5.23395 5.28808 5.41187 5.44805 5.63646 5.68880 5.77962 5.91166 6.03962 6.13881 6.28110 6.73098 6.86925 6.88080 6.92232 6.99217 7.25312 7.53627 7.80763 8.00742 8.02259 8.06696 8.41890 8.67444 8.81518 8.88378 9.75767 10.09989 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.003553 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.374351 B = 7877.992656 C = 8603.195513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.627 5.627 3 C 0.110 3.890 4 C -0.110 4.110 5 H 0.097 0.903 6 C 0.153 3.847 7 N -0.744 5.744 8 C 0.397 3.603 9 C -0.336 4.336 10 C 0.156 3.844 11 C -0.458 4.458 12 H 0.079 0.921 13 C 0.079 3.921 14 N -0.784 5.784 15 Si 0.910 3.090 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.263 1.263 19 C -0.245 4.245 20 C 0.116 3.884 21 N -0.624 5.624 22 C -0.150 4.150 23 C 0.518 3.482 24 O -0.537 6.537 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.390 0.610 33 H 0.097 0.903 34 H 0.283 0.717 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.820 -0.545 -4.522 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.362 5.362 3 C -0.013 4.013 4 C -0.129 4.129 5 H 0.115 0.885 6 C 0.027 3.973 7 N -0.382 5.382 8 C 0.166 3.834 9 C -0.363 4.363 10 C 0.148 3.852 11 C -0.489 4.489 12 H 0.097 0.903 13 C -0.140 4.140 14 N -0.409 5.409 15 Si 0.734 3.266 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.269 4.269 20 C -0.033 4.033 21 N -0.347 5.347 22 C -0.190 4.190 23 C 0.306 3.694 24 O -0.413 6.413 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.224 0.776 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.977 -1.731 -4.941 13.993 hybrid contribution 0.105 1.145 1.015 1.534 sum -12.871 -0.586 -3.925 13.469 Atomic orbital electron populations 1.21523 0.78135 1.03114 1.01781 1.48245 1.06452 1.07526 1.74023 1.22074 0.89621 0.87077 1.02558 1.22377 0.94112 0.94499 1.01925 0.88487 1.21015 0.81226 0.98031 0.97007 1.43999 1.02038 1.49158 1.42974 1.17903 0.85613 0.89916 0.89927 1.21116 0.98473 1.08954 1.07709 1.17589 0.90397 0.88130 0.89084 1.19550 0.99626 1.18118 1.11595 0.90306 1.25959 0.94584 0.96791 0.96709 1.69793 1.08190 1.31402 1.31498 0.86338 0.78491 0.82027 0.79705 1.18926 1.20242 1.18715 1.21785 0.99546 1.04746 1.00827 1.21355 0.93684 0.94074 0.94224 1.66732 0.97130 1.34936 1.35918 1.22466 0.93924 0.97017 1.05546 1.21099 0.89476 0.84190 0.74636 1.90709 1.78947 1.21180 1.50501 0.92671 0.90776 0.90945 0.90304 0.89941 0.92062 0.92178 0.77624 0.88502 0.90632 0.85975 0.86452 0.87808 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 10.97 59.85 0.66 1.42 16 2 N -0.63 -6.38 3.34 -180.22 -0.60 -6.98 16 3 C 0.11 0.91 6.91 -3.12 -0.02 0.88 16 4 C -0.11 -1.06 3.16 -88.98 -0.28 -1.34 16 5 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 6 C 0.15 1.98 4.19 -4.04 -0.02 1.96 16 7 N -0.74 -12.58 5.67 -60.47 -0.34 -12.92 16 8 C 0.40 8.89 7.65 -154.97 -1.19 7.71 16 9 C -0.34 -8.03 9.12 -38.44 -0.35 -8.38 16 10 C 0.16 4.11 5.60 -106.56 -0.60 3.51 16 11 C -0.46 -11.81 9.12 -37.65 -0.34 -12.16 16 12 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 13 C 0.08 1.93 5.20 -17.34 -0.09 1.84 16 14 N -0.78 -19.74 10.92 55.55 0.61 -19.13 16 15 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 16 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 17 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 C -0.24 -6.32 8.74 -39.07 -0.34 -6.66 16 20 C 0.12 2.79 11.10 -18.05 -0.20 2.59 16 21 N -0.62 -14.91 10.37 -12.82 -0.13 -15.04 16 22 C -0.15 -1.65 6.36 -26.73 -0.17 -1.82 16 23 C 0.52 6.70 8.03 -10.77 -0.09 6.61 16 24 O -0.54 -9.02 17.60 5.56 0.10 -8.92 16 25 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.07 0.65 7.93 -51.93 -0.41 0.24 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.79 7.93 -51.93 -0.41 0.38 16 31 H 0.06 0.82 7.72 -51.93 -0.40 0.42 16 32 H 0.39 6.07 8.60 -40.82 -0.35 5.72 16 33 H 0.10 2.13 6.71 -52.49 -0.35 1.78 16 34 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 35 H 0.12 3.21 6.20 -52.49 -0.33 2.89 16 36 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.11 1.28 7.75 -51.93 -0.40 0.87 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -31.31 320.66 -8.75 -40.06 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.15 Total: 8.99 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.03 Total: -3.83 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.47 Total: -54.07 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.10 Total: -8.92 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.31 -8.75 -40.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157908374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.393 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds