Wall clock time and date at job start Mon Mar 30 2020 02:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46764 * 124.34506 * 2 1 4 4 C 1.54485 * 105.54732 * 197.07370 * 3 2 1 5 5 H 1.08994 * 110.96975 * 92.69815 * 4 3 2 6 6 C 1.52999 * 110.96868 * 216.42611 * 4 3 2 7 7 N 1.46504 * 109.46844 * 184.99816 * 6 4 3 8 8 C 1.39087 * 119.99872 * 179.97438 * 7 6 4 9 9 C 1.38742 * 119.65812 * 0.02562 * 8 7 6 10 10 C 1.40773 * 118.67151 * 179.97438 * 9 8 7 11 11 C 1.41551 * 120.99803 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99784 * 336.13253 * 11 10 9 13 13 C 1.40020 * 120.00233 * 156.12376 * 11 10 9 14 14 N 1.30751 * 120.00270 * 343.17964 * 13 11 10 15 15 Si 1.86805 * 120.00346 * 163.17485 * 13 11 10 16 16 H 1.48502 * 109.46871 * 60.00143 * 15 13 11 17 17 H 1.48496 * 109.47548 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46860 * 300.00339 * 15 13 11 19 19 C 1.41189 * 118.01484 * 0.02562 * 10 9 8 20 20 C 1.36562 * 119.14098 * 359.97438 * 19 10 9 21 21 N 1.32091 * 121.26997 * 359.73250 * 20 19 10 22 22 C 1.54634 * 101.76487 * 334.53957 * 4 3 2 23 23 C 1.34615 * 124.46805 * 180.02562 * 2 1 3 24 24 O 1.21278 * 124.91230 * 359.55912 * 23 2 1 25 25 H 1.09008 * 109.46734 * 90.00259 * 1 2 3 26 26 H 1.08998 * 109.47507 * 210.00054 * 1 2 3 27 27 H 1.09001 * 109.47369 * 330.00251 * 1 2 3 28 28 H 1.09007 * 110.24840 * 78.03396 * 3 2 1 29 29 H 1.08998 * 110.25092 * 316.11636 * 3 2 1 30 30 H 1.08997 * 109.47071 * 304.99735 * 6 4 3 31 31 H 1.09002 * 109.47493 * 64.99853 * 6 4 3 32 32 H 0.97000 * 120.00247 * 0.02562 * 7 6 4 33 33 H 1.08001 * 120.66796 * 359.97438 * 9 8 7 34 34 H 0.96994 * 120.00613 * 179.97438 * 14 13 11 35 35 H 1.07996 * 120.43404 * 179.97438 * 19 10 9 36 36 H 1.08002 * 119.36607 * 180.02562 * 20 19 10 37 37 H 1.08999 * 110.48585 * 143.47171 * 22 4 3 38 38 H 1.09000 * 110.48900 * 266.12372 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7013 0.7510 -0.4370 5 1 3.8263 0.8481 -1.5154 6 6 4.7877 1.5277 0.3096 7 7 6.1036 1.1516 -0.2133 8 6 7.2528 1.7313 0.3135 9 6 7.1449 2.6647 1.3344 10 6 8.3216 3.2380 1.8525 11 6 8.2687 4.1954 2.8938 12 1 7.3729 4.7794 3.0454 13 6 9.3776 4.3852 3.7274 14 7 10.3232 3.4834 3.7731 15 14 9.5063 5.9271 4.7741 16 1 8.3465 5.9957 5.6990 17 1 10.7654 5.8879 5.5605 18 1 9.5096 7.1236 3.8946 19 6 9.5561 2.8303 1.3019 20 6 9.5632 1.9045 0.2981 21 7 8.4400 1.3822 -0.1609 22 6 3.6927 -0.7357 -0.0116 23 6 2.2269 -1.1098 -0.0005 24 8 1.7998 -2.2449 0.0066 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 2.3308 1.6429 1.0005 29 1 1.8973 1.9391 -0.7089 30 1 4.6324 2.5972 0.1674 31 1 4.7380 1.2915 1.3725 32 1 6.1732 0.4987 -0.9273 33 1 6.1776 2.9458 1.7237 34 1 11.0916 3.6150 4.3502 35 1 10.4828 3.2453 1.6697 36 1 10.5055 1.5897 -0.1255 37 1 4.2358 -1.3428 -0.7359 38 1 4.1233 -0.8504 0.9831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157908374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:29 Heat of formation + Delta-G solvation = -24.772223 kcal Electronic energy + Delta-G solvation = -20317.216987 eV Core-core repulsion = 17158.128671 eV Total energy + Delta-G solvation = -3159.088316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48829 -40.23407 -38.07283 -36.62720 -35.68704 -33.67356 -32.49881 -30.27860 -28.85265 -27.80721 -27.71416 -25.67570 -23.33348 -22.61606 -21.62914 -20.63733 -19.39811 -17.89707 -17.84007 -17.30079 -16.69953 -16.52118 -16.31186 -15.84684 -15.65255 -15.16059 -14.75526 -14.68240 -14.52919 -14.29207 -14.16461 -13.57584 -13.31863 -13.25654 -13.13885 -12.91263 -12.77726 -12.69809 -12.23354 -11.99913 -11.93735 -11.69665 -11.20905 -10.95184 -10.56363 -9.88476 -9.79254 -9.74607 -8.66698 -8.18000 -6.51246 1.02227 1.23571 1.41604 1.46763 1.53361 1.64813 2.01232 2.21379 2.58034 2.85009 3.28649 3.48558 3.74614 3.87759 4.00568 4.29045 4.32464 4.40589 4.48170 4.60208 4.69399 4.74714 4.78005 4.85519 4.92317 4.96049 5.05186 5.10060 5.15345 5.25492 5.35877 5.52862 5.66058 5.95190 6.01775 6.15893 6.44036 6.60649 6.90483 6.96405 7.06888 7.10491 7.93510 8.30412 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.003553 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.374351 B = 7877.992656 C = 8603.195513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.622 5.622 3 C 0.111 3.889 4 C -0.093 4.093 5 H 0.112 0.888 6 C 0.151 3.849 7 N -0.731 5.731 8 C 0.398 3.602 9 C -0.353 4.353 10 C 0.127 3.873 11 C -0.490 4.490 12 H 0.082 0.918 13 C 0.039 3.961 14 N -0.815 5.815 15 Si 0.986 3.014 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.259 1.259 19 C -0.272 4.272 20 C 0.115 3.885 21 N -0.636 5.636 22 C -0.148 4.148 23 C 0.509 3.491 24 O -0.585 6.585 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.399 0.601 33 H 0.110 0.890 34 H 0.291 0.709 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.120 0.844 -4.684 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.355 5.355 3 C -0.011 4.011 4 C -0.113 4.113 5 H 0.130 0.870 6 C 0.027 3.973 7 N -0.367 5.367 8 C 0.166 3.834 9 C -0.379 4.379 10 C 0.119 3.881 11 C -0.521 4.521 12 H 0.100 0.900 13 C -0.178 4.178 14 N -0.440 5.440 15 Si 0.806 3.194 16 H -0.181 1.181 17 H -0.193 1.193 18 H -0.183 1.183 19 C -0.297 4.297 20 C -0.034 4.034 21 N -0.360 5.360 22 C -0.188 4.188 23 C 0.298 3.702 24 O -0.466 6.466 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.234 0.766 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.334 -0.328 -5.125 15.226 hybrid contribution 0.446 0.659 1.019 1.293 sum -13.888 0.331 -4.106 14.486 Atomic orbital electron populations 1.21725 0.76745 1.03846 1.02797 1.48405 1.07510 1.07331 1.72291 1.22230 0.88211 0.86595 1.04076 1.22233 0.93948 0.92803 1.02271 0.86964 1.21195 0.80083 0.99022 0.97036 1.44105 1.01913 1.48265 1.42465 1.18183 0.86657 0.89299 0.89287 1.21267 0.98429 1.09675 1.08574 1.18004 0.91412 0.88838 0.89817 1.19862 1.00779 1.18977 1.12432 0.89960 1.26854 0.93655 0.99708 0.97629 1.69850 1.08787 1.33126 1.32249 0.85199 0.78901 0.77449 0.77859 1.18108 1.19276 1.18327 1.21755 0.99123 1.06476 1.02363 1.21703 0.94931 0.93248 0.93544 1.66882 0.97586 1.35240 1.36278 1.22441 0.92951 0.98108 1.05287 1.21387 0.90416 0.84118 0.74309 1.90678 1.79779 1.23126 1.53060 0.91513 0.92220 0.88073 0.89267 0.86969 0.91211 0.92783 0.76623 0.87182 0.89865 0.87337 0.84200 0.87605 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 10.97 127.77 1.40 2.62 16 2 N -0.62 -11.22 3.34 -842.57 -2.81 -14.03 16 3 C 0.11 1.44 6.91 86.83 0.60 2.04 16 4 C -0.09 -1.54 3.16 -9.73 -0.03 -1.57 16 5 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 6 C 0.15 3.56 4.19 86.38 0.36 3.92 16 7 N -0.73 -23.46 5.67 -345.24 -1.96 -25.41 16 8 C 0.40 17.55 7.65 132.90 1.02 18.57 16 9 C -0.35 -16.87 9.12 23.01 0.21 -16.66 16 10 C 0.13 6.82 5.60 -21.12 -0.12 6.70 16 11 C -0.49 -25.61 9.12 23.52 0.21 -25.40 16 12 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 13 C 0.04 1.89 5.20 85.29 0.44 2.33 16 14 N -0.81 -41.61 10.92 21.84 0.24 -41.37 16 15 Si 0.99 36.42 29.59 68.60 2.03 38.45 16 16 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 17 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 19 C -0.27 -14.41 8.74 22.60 0.20 -14.21 16 20 C 0.12 5.60 11.10 84.26 0.94 6.53 16 21 N -0.64 -30.08 10.37 -194.47 -2.02 -32.09 16 22 C -0.15 -3.07 6.36 30.59 0.19 -2.87 16 23 C 0.51 12.72 8.03 87.87 0.71 13.43 16 24 O -0.59 -19.89 17.60 -3.02 -0.05 -19.94 16 25 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 1.00 7.93 -2.39 -0.02 0.98 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 1.04 7.89 -2.38 -0.02 1.03 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.60 7.93 -2.39 -0.02 1.58 16 31 H 0.05 1.38 7.72 -2.39 -0.02 1.37 16 32 H 0.40 11.60 8.60 -92.71 -0.80 10.81 16 33 H 0.11 4.80 6.71 -2.91 -0.02 4.78 16 34 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 35 H 0.11 5.92 6.20 -2.91 -0.02 5.91 16 36 H 0.14 5.93 8.06 -2.91 -0.02 5.91 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.10 2.31 7.75 -2.39 -0.02 2.29 16 Total: -1.00 -69.18 320.66 1.84 -67.34 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.28 Total: 31.63 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 6.13 Total: -4.58 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -6.55 Total: -112.91 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -69.18 1.84 -67.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157908374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.571 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds