Wall clock time and date at job start Mon Mar 30 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45754 * 117.94336 * 2 1 4 4 C 1.52923 * 110.48433 * 160.92920 * 3 2 1 5 5 H 1.08996 * 109.73375 * 290.91214 * 4 3 2 6 6 N 1.46497 * 109.60221 * 170.50673 * 4 3 2 7 7 C 1.38097 * 120.00101 * 85.81253 * 6 4 3 8 8 N 1.32268 * 119.90313 * 0.02562 * 7 6 4 9 9 C 1.31966 * 121.86404 * 179.68218 * 8 7 6 10 10 C 1.38680 * 121.45019 * 0.58953 * 9 8 7 11 11 C 1.38007 * 119.62097 * 359.42046 * 10 9 8 12 12 C 1.40997 * 118.28451 * 0.27813 * 11 10 9 13 13 C 1.41020 * 120.70589 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00258 * 154.87010 * 13 12 11 15 15 C 1.39944 * 120.00013 * 334.86980 * 13 12 11 16 16 N 1.30868 * 120.00125 * 343.96627 * 15 13 12 17 17 Si 1.86805 * 119.99966 * 163.96706 * 15 13 12 18 18 H 1.48503 * 109.47185 * 59.99668 * 17 15 13 19 19 H 1.48500 * 109.47434 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.46969 * 299.99896 * 17 15 13 21 21 C 1.53347 * 108.67384 * 50.75307 * 4 3 2 22 22 C 1.53075 * 108.42319 * 292.46440 * 21 4 3 23 23 C 1.33351 * 117.94404 * 180.02562 * 2 1 3 24 24 O 1.21282 * 118.25003 * 2.19561 * 23 2 1 25 25 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46868 * 299.99797 * 1 2 3 27 27 H 1.09000 * 109.47487 * 59.99579 * 1 2 3 28 28 H 1.08994 * 109.30233 * 40.61752 * 3 2 1 29 29 H 1.09003 * 109.30140 * 281.23487 * 3 2 1 30 30 H 0.97003 * 120.00023 * 265.81230 * 6 4 3 31 31 H 1.08000 * 119.27695 * 180.28973 * 9 8 7 32 32 H 1.07993 * 120.19255 * 179.69602 * 10 9 8 33 33 H 1.08000 * 120.85800 * 180.25224 * 11 10 9 34 34 H 0.97008 * 119.99773 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.67746 * 52.20413 * 21 4 3 36 36 H 1.09003 * 109.67003 * 172.73634 * 21 4 3 37 37 H 1.08998 * 109.39835 * 169.02991 * 22 21 4 38 38 H 1.08994 * 109.40148 * 288.77923 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5949 1.1259 0.4681 5 1 3.6127 0.8739 1.5283 6 7 4.3254 2.3765 0.2477 7 6 4.2868 3.3757 1.2002 8 7 3.5901 3.2014 2.3109 9 6 3.5316 4.1276 3.2491 10 6 4.1907 5.3399 3.1113 11 6 4.9359 5.5859 1.9760 12 6 4.9941 4.5846 0.9850 13 6 5.7399 4.7822 -0.1954 14 1 6.1203 3.9322 -0.7425 15 6 5.9872 6.0796 -0.6579 16 7 5.2849 7.0834 -0.1975 17 14 7.3196 6.3788 -1.9326 18 1 7.0066 5.6120 -3.1652 19 1 7.3814 7.8273 -2.2536 20 1 8.6297 5.9346 -1.3926 21 6 4.2492 -0.0013 -0.3399 22 6 3.5838 -1.3240 0.0485 23 6 2.0899 -1.1780 -0.0005 24 8 1.4158 -2.1854 -0.0419 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6270 1.9718 0.6697 29 1 2.1398 1.6998 -1.0090 30 1 4.8362 2.5027 -0.5672 31 1 2.9537 3.9393 4.1419 32 1 4.1250 6.0855 3.8897 33 1 5.4606 6.5214 1.8497 34 1 5.4561 7.9827 -0.5185 35 1 4.1087 0.1814 -1.4052 36 1 5.3142 -0.0455 -0.1120 37 1 3.8942 -2.1034 -0.6474 38 1 3.8880 -1.5996 1.0582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167235033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:17 Heat of formation + Delta-G solvation = -3.086068 kcal Electronic energy + Delta-G solvation = -21224.957652 eV Core-core repulsion = 18066.809718 eV Total energy + Delta-G solvation = -3158.147934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36015 -38.60125 -36.68704 -34.59438 -34.03953 -32.87253 -30.48714 -29.49322 -27.68184 -26.67457 -25.41436 -24.05400 -22.31715 -21.22512 -20.53151 -18.57569 -17.32691 -16.69161 -16.51539 -16.19065 -15.93536 -15.25216 -14.71274 -14.26564 -14.04308 -13.74662 -13.41777 -13.12541 -12.97605 -12.73584 -12.52361 -12.26152 -12.03213 -11.69964 -11.50334 -11.49211 -11.38962 -11.19961 -11.00993 -10.67932 -10.57308 -9.86200 -9.61202 -9.37421 -9.16901 -8.57967 -8.17460 -7.99412 -6.89707 -6.63872 -4.33151 2.67607 2.72826 2.99617 3.01278 3.03206 3.13796 3.17873 3.85495 4.11933 4.61715 4.70617 4.84550 4.98464 5.16538 5.39881 5.45865 5.50159 5.62670 5.68608 5.74257 5.80066 5.87392 5.91103 5.99373 6.22942 6.35255 6.39601 6.51183 6.68846 6.79360 7.04011 7.09183 7.51576 7.59584 7.72674 7.91101 8.16801 8.24141 8.39234 8.56132 8.70518 8.88930 9.66935 10.12526 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.005092 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.080445 B = 5497.906542 C = 6261.896341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.599 5.599 3 C 0.100 3.900 4 C 0.158 3.842 5 H 0.090 0.910 6 N -0.720 5.720 7 C 0.297 3.703 8 N -0.530 5.530 9 C 0.001 3.999 10 C -0.188 4.188 11 C -0.125 4.125 12 C 0.036 3.964 13 C -0.457 4.457 14 H 0.075 0.925 15 C 0.076 3.924 16 N -0.797 5.797 17 Si 0.907 3.093 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.135 4.135 22 C -0.127 4.127 23 C 0.516 3.484 24 O -0.569 6.569 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.405 0.595 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.281 0.719 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 -7.030 -1.655 7.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C -0.025 4.025 4 C 0.050 3.950 5 H 0.108 0.892 6 N -0.359 5.359 7 C 0.061 3.939 8 N -0.247 5.247 9 C -0.153 4.153 10 C -0.210 4.210 11 C -0.151 4.151 12 C 0.029 3.971 13 C -0.488 4.488 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.423 5.423 17 Si 0.732 3.268 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.173 4.173 22 C -0.167 4.167 23 C 0.305 3.695 24 O -0.449 6.449 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.242 0.758 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.605 -8.112 -1.453 8.643 hybrid contribution 1.119 1.452 -0.981 2.079 sum -1.486 -6.661 -2.434 7.245 Atomic orbital electron populations 1.21756 0.79987 1.04169 1.01410 1.47195 1.07449 1.06408 1.72064 1.22073 0.94957 0.83506 1.01947 1.20673 0.88997 0.84996 1.00319 0.89244 1.43603 1.56517 1.13979 1.21818 1.18426 0.96530 0.89627 0.89366 1.66516 1.22219 1.33719 1.02227 1.21348 1.05000 0.91251 0.97685 1.21429 1.02643 0.97853 0.99085 1.21373 1.01172 1.00701 0.91885 1.17900 0.94023 0.90774 0.94421 1.19111 1.29954 0.92557 1.07196 0.90691 1.25813 0.95484 0.95814 0.97018 1.69796 1.33225 1.00982 1.38284 0.86378 0.81714 0.77960 0.80735 1.19098 1.20400 1.18918 1.22006 1.01127 0.93365 1.00804 1.21556 0.90939 0.99330 1.04899 1.20203 0.91082 0.82748 0.75515 1.90661 1.66531 1.35964 1.51770 0.89277 0.92129 0.92392 0.89848 0.91862 0.75763 0.86499 0.88724 0.85703 0.90820 0.91014 0.89846 0.88150 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.47 59.85 0.63 1.51 16 2 N -0.60 -8.65 3.21 -182.85 -0.59 -9.23 16 3 C 0.10 1.50 6.00 -4.48 -0.03 1.48 16 4 C 0.16 2.44 2.54 -67.79 -0.17 2.27 16 5 H 0.09 1.54 7.51 -51.93 -0.39 1.15 16 6 N -0.72 -13.28 5.13 -53.35 -0.27 -13.56 16 7 C 0.30 6.70 7.50 -155.02 -1.16 5.54 16 8 N -0.53 -11.89 9.17 -11.87 -0.11 -12.00 16 9 C 0.00 0.02 11.17 -17.33 -0.19 -0.17 16 10 C -0.19 -4.22 10.08 -39.50 -0.40 -4.62 16 11 C -0.12 -3.08 8.79 -38.62 -0.34 -3.42 16 12 C 0.04 0.88 5.60 -106.48 -0.60 0.28 16 13 C -0.46 -10.92 8.52 -37.89 -0.32 -11.24 16 14 H 0.08 1.66 6.69 -52.48 -0.35 1.31 16 15 C 0.08 1.77 5.20 -17.32 -0.09 1.68 16 16 N -0.80 -19.48 10.93 55.55 0.61 -18.87 16 17 Si 0.91 17.50 29.59 -169.99 -5.03 12.47 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.13 -1.64 5.51 -26.51 -0.15 -1.78 16 22 C -0.13 -1.51 6.03 -28.09 -0.17 -1.68 16 23 C 0.52 7.74 7.47 -11.87 -0.09 7.65 16 24 O -0.57 -10.16 15.95 5.56 0.09 -10.07 16 25 H 0.09 1.19 6.59 -51.93 -0.34 0.85 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.41 7.17 6.81 -40.82 -0.28 6.89 16 31 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 33 H 0.13 3.18 6.25 -52.49 -0.33 2.85 16 34 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 35 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -28.03 313.52 -8.71 -36.74 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.05 Total: 12.30 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.08 Total: -2.50 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.36 Total: -53.66 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.03 -8.71 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167235033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.655 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds