Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45754 * 117.94336 * 2 1 4 4 C 1.52923 * 110.48433 * 160.92920 * 3 2 1 5 5 H 1.08996 * 109.73375 * 290.91214 * 4 3 2 6 6 N 1.46497 * 109.60221 * 170.50673 * 4 3 2 7 7 C 1.38097 * 120.00101 * 85.81253 * 6 4 3 8 8 N 1.32268 * 119.90313 * 0.02562 * 7 6 4 9 9 C 1.31966 * 121.86404 * 179.68218 * 8 7 6 10 10 C 1.38680 * 121.45019 * 0.58953 * 9 8 7 11 11 C 1.38007 * 119.62097 * 359.42046 * 10 9 8 12 12 C 1.40997 * 118.28451 * 0.27813 * 11 10 9 13 13 C 1.41020 * 120.70589 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00258 * 154.87010 * 13 12 11 15 15 C 1.39944 * 120.00013 * 334.86980 * 13 12 11 16 16 N 1.30868 * 120.00125 * 343.96627 * 15 13 12 17 17 Si 1.86805 * 119.99966 * 163.96706 * 15 13 12 18 18 H 1.48503 * 109.47185 * 59.99668 * 17 15 13 19 19 H 1.48500 * 109.47434 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.46969 * 299.99896 * 17 15 13 21 21 C 1.53347 * 108.67384 * 50.75307 * 4 3 2 22 22 C 1.53075 * 108.42319 * 292.46440 * 21 4 3 23 23 C 1.33351 * 117.94404 * 180.02562 * 2 1 3 24 24 O 1.21282 * 118.25003 * 2.19561 * 23 2 1 25 25 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46868 * 299.99797 * 1 2 3 27 27 H 1.09000 * 109.47487 * 59.99579 * 1 2 3 28 28 H 1.08994 * 109.30233 * 40.61752 * 3 2 1 29 29 H 1.09003 * 109.30140 * 281.23487 * 3 2 1 30 30 H 0.97003 * 120.00023 * 265.81230 * 6 4 3 31 31 H 1.08000 * 119.27695 * 180.28973 * 9 8 7 32 32 H 1.07993 * 120.19255 * 179.69602 * 10 9 8 33 33 H 1.08000 * 120.85800 * 180.25224 * 11 10 9 34 34 H 0.97008 * 119.99773 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.67746 * 52.20413 * 21 4 3 36 36 H 1.09003 * 109.67003 * 172.73634 * 21 4 3 37 37 H 1.08998 * 109.39835 * 169.02991 * 22 21 4 38 38 H 1.08994 * 109.40148 * 288.77923 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5949 1.1259 0.4681 5 1 3.6127 0.8739 1.5283 6 7 4.3254 2.3765 0.2477 7 6 4.2868 3.3757 1.2002 8 7 3.5901 3.2014 2.3109 9 6 3.5316 4.1276 3.2491 10 6 4.1907 5.3399 3.1113 11 6 4.9359 5.5859 1.9760 12 6 4.9941 4.5846 0.9850 13 6 5.7399 4.7822 -0.1954 14 1 6.1203 3.9322 -0.7425 15 6 5.9872 6.0796 -0.6579 16 7 5.2849 7.0834 -0.1975 17 14 7.3196 6.3788 -1.9326 18 1 7.0066 5.6120 -3.1652 19 1 7.3814 7.8273 -2.2536 20 1 8.6297 5.9346 -1.3926 21 6 4.2492 -0.0013 -0.3399 22 6 3.5838 -1.3240 0.0485 23 6 2.0899 -1.1780 -0.0005 24 8 1.4158 -2.1854 -0.0419 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6270 1.9718 0.6697 29 1 2.1398 1.6998 -1.0090 30 1 4.8362 2.5027 -0.5672 31 1 2.9537 3.9393 4.1419 32 1 4.1250 6.0855 3.8897 33 1 5.4606 6.5214 1.8497 34 1 5.4561 7.9827 -0.5185 35 1 4.1087 0.1814 -1.4052 36 1 5.3142 -0.0455 -0.1120 37 1 3.8942 -2.1034 -0.6474 38 1 3.8880 -1.5996 1.0582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167235033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = -19.124962 kcal Electronic energy + Delta-G solvation = -21225.653151 eV Core-core repulsion = 18066.809718 eV Total energy + Delta-G solvation = -3158.843433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55282 -40.27363 -38.02754 -35.87282 -35.79403 -34.14846 -32.26865 -30.97649 -29.03388 -27.89640 -27.12429 -25.20486 -23.80242 -22.81555 -22.10486 -19.76469 -19.10550 -18.20883 -17.79272 -17.42032 -17.21578 -16.79776 -16.19186 -15.65415 -15.41132 -15.07350 -14.90554 -14.56521 -14.33387 -14.23723 -13.80710 -13.60360 -13.21643 -13.20391 -13.13714 -12.83939 -12.70371 -12.63494 -12.34378 -12.18104 -11.77761 -11.56489 -11.10011 -10.91103 -10.64396 -9.96020 -9.78498 -9.76718 -8.62551 -8.32352 -6.12829 0.96194 1.24251 1.44703 1.53591 1.57092 1.58561 1.98414 2.24699 2.72968 2.87523 3.59400 3.75567 3.77085 3.93889 4.04200 4.27162 4.37621 4.43003 4.47274 4.59826 4.64299 4.67939 4.77894 4.86028 4.89682 4.93132 5.02514 5.14471 5.21618 5.28684 5.33399 5.38728 5.81569 5.95551 6.12806 6.36206 6.44767 6.78487 6.86442 6.93574 7.08058 7.16357 7.94024 8.40761 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.005092 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.080445 B = 5497.906542 C = 6261.896341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.600 5.600 3 C 0.111 3.889 4 C 0.158 3.842 5 H 0.073 0.927 6 N -0.712 5.712 7 C 0.299 3.701 8 N -0.538 5.538 9 C -0.002 4.002 10 C -0.196 4.196 11 C -0.152 4.152 12 C 0.004 3.996 13 C -0.477 4.477 14 H 0.087 0.913 15 C 0.035 3.965 16 N -0.831 5.831 17 Si 0.978 3.022 18 H -0.256 1.256 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.123 4.123 22 C -0.120 4.120 23 C 0.509 3.491 24 O -0.601 6.601 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.409 0.591 31 H 0.145 0.855 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.285 0.715 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 -8.085 -2.583 8.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.332 5.332 3 C -0.014 4.014 4 C 0.051 3.949 5 H 0.091 0.909 6 N -0.350 5.350 7 C 0.060 3.940 8 N -0.256 5.256 9 C -0.155 4.155 10 C -0.219 4.219 11 C -0.178 4.178 12 C -0.003 4.003 13 C -0.508 4.508 14 H 0.105 0.895 15 C -0.179 4.179 16 N -0.458 5.458 17 Si 0.800 3.200 18 H -0.180 1.180 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.161 4.161 22 C -0.159 4.159 23 C 0.299 3.701 24 O -0.483 6.483 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.247 0.753 31 H 0.163 0.837 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.994 -9.184 -2.385 9.696 hybrid contribution 0.832 1.749 -0.624 2.035 sum -1.161 -7.435 -3.009 8.104 Atomic orbital electron populations 1.21852 0.79180 1.04014 1.02561 1.47265 1.08174 1.06106 1.71619 1.21845 0.94519 0.83429 1.01577 1.20769 0.89299 0.84679 1.00151 0.90884 1.43648 1.56333 1.14055 1.21003 1.18635 0.95550 0.89895 0.89873 1.66647 1.22564 1.33892 1.02449 1.21851 1.04474 0.90825 0.98365 1.21638 1.02387 0.98786 0.99060 1.21385 1.02581 1.00601 0.93269 1.18255 0.95160 0.91808 0.95035 1.19409 1.30514 0.93493 1.07387 0.89491 1.26639 0.97074 0.95313 0.98869 1.69880 1.34678 1.01495 1.39772 0.85299 0.78596 0.77776 0.78350 1.18039 1.20297 1.18776 1.21928 1.01508 0.91842 1.00795 1.21585 0.88473 0.99653 1.06225 1.20787 0.92346 0.82227 0.74716 1.90651 1.67507 1.36836 1.53350 0.90004 0.91445 0.90841 0.91826 0.91398 0.75310 0.83733 0.86673 0.87452 0.90501 0.89819 0.88481 0.85977 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.62 10.47 127.77 1.34 2.95 16 2 N -0.60 -16.49 3.21 -851.60 -2.73 -19.22 16 3 C 0.11 3.21 6.00 86.49 0.52 3.72 16 4 C 0.16 4.63 2.54 45.08 0.11 4.74 16 5 H 0.07 2.42 7.51 -2.39 -0.02 2.41 16 6 N -0.71 -25.43 5.13 -322.71 -1.66 -27.09 16 7 C 0.30 13.37 7.50 134.05 1.01 14.38 16 8 N -0.54 -23.82 9.17 -191.46 -1.75 -25.57 16 9 C 0.00 -0.09 11.17 84.78 0.95 0.85 16 10 C -0.20 -8.84 10.08 22.32 0.22 -8.61 16 11 C -0.15 -7.66 8.79 22.89 0.20 -7.46 16 12 C 0.00 0.22 5.60 -21.06 -0.12 0.10 16 13 C -0.48 -22.79 8.52 23.37 0.20 -22.59 16 14 H 0.09 3.78 6.69 -2.91 -0.02 3.76 16 15 C 0.04 1.64 5.20 85.25 0.44 2.08 16 16 N -0.83 -41.33 10.93 21.83 0.24 -41.09 16 17 Si 0.98 35.42 29.59 68.60 2.03 37.45 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 19 H -0.28 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 21 C -0.12 -2.62 5.51 30.74 0.17 -2.45 16 22 C -0.12 -2.50 6.03 29.71 0.18 -2.32 16 23 C 0.51 14.40 7.47 87.72 0.66 15.05 16 24 O -0.60 -20.74 15.95 -3.04 -0.05 -20.78 16 25 H 0.08 2.13 6.59 -2.39 -0.02 2.12 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.41 13.87 6.81 -92.71 -0.63 13.24 16 31 H 0.15 5.30 8.06 -2.91 -0.02 5.28 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.11 5.69 6.25 -2.91 -0.02 5.67 16 34 H 0.28 13.02 8.30 -92.70 -0.77 12.25 16 35 H 0.08 1.64 8.13 -2.39 -0.02 1.62 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -60.33 313.52 2.40 -57.93 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.45 Total: 37.94 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.88 Total: 0.45 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -5.91 Total: -112.97 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -60.33 2.40 -57.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167235033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.803 kcal (2) G-P(sol) polarization free energy of solvation -60.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds