Wall clock time and date at job start Mon Mar 30 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36020 * 116.99760 * 2 1 4 4 C 1.37848 * 120.66784 * 359.97266 * 3 2 1 5 5 N 1.32531 * 121.16022 * 180.02562 * 4 3 2 6 6 C 1.32153 * 122.49593 * 359.97438 * 5 4 3 7 7 N 1.39327 * 119.81336 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99970 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47185 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47437 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47411 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99446 * 0.02562 * 11 10 9 13 13 C 1.37866 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00221 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00246 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47255 * 90.00363 * 15 13 11 17 17 H 1.48498 * 109.47585 * 210.00488 * 15 13 11 18 18 H 1.48511 * 109.47070 * 330.00608 * 15 13 11 19 19 C 1.39689 * 120.37369 * 0.02562 * 6 5 4 20 20 N 1.37646 * 134.31400 * 180.02562 * 19 6 5 21 21 H 0.97004 * 125.05994 * 359.97438 * 20 19 6 22 22 C 1.36677 * 109.87019 * 179.97438 * 20 19 6 23 23 C 1.34454 * 109.88414 * 359.76348 * 22 20 19 24 24 C 1.40440 * 120.66055 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47008 * 299.99908 * 1 2 3 26 26 H 1.09002 * 109.46848 * 59.99890 * 1 2 3 27 27 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.41665 * 0.02562 * 4 3 2 29 29 H 0.97000 * 120.00122 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.46869 * 299.99960 * 8 7 6 31 31 H 1.08995 * 109.47544 * 59.99641 * 8 7 6 32 32 H 1.09003 * 109.46913 * 299.99601 * 9 8 7 33 33 H 1.08995 * 109.47443 * 59.99247 * 9 8 7 34 34 H 1.09003 * 109.46710 * 299.99684 * 10 9 8 35 35 H 1.08995 * 109.47453 * 59.99211 * 10 9 8 36 36 H 0.96994 * 120.00230 * 179.97438 * 14 13 11 37 37 H 1.07993 * 125.06114 * 179.97438 * 22 20 19 38 38 H 1.08001 * 126.51504 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3092 2.3767 -0.0006 5 7 1.9006 3.5627 -0.0011 6 6 3.2149 3.7006 -0.0006 7 7 3.7777 4.9752 -0.0017 8 6 2.9129 6.1577 -0.0029 9 6 3.7762 7.4209 -0.0046 10 6 2.8731 8.6559 -0.0052 11 6 3.7234 9.9001 -0.0062 12 1 4.8003 9.8181 -0.0069 13 6 3.1267 11.1429 -0.0074 14 7 1.8153 11.2428 -0.0071 15 14 4.1806 12.6852 -0.0080 16 1 4.4606 13.0929 -1.4083 17 1 3.4587 13.7785 0.6909 18 1 5.4608 12.4102 0.6927 19 6 4.0432 2.5758 0.0000 20 7 5.4064 2.3854 0.0010 21 1 6.0681 3.0947 0.0012 22 6 5.6887 1.0481 0.0017 23 6 4.5461 0.3395 0.0064 24 6 3.4480 1.3017 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2305 2.3217 -0.0006 29 1 4.7421 5.0796 -0.0017 30 1 2.2838 6.1469 -0.8929 31 1 2.2836 6.1486 0.8870 32 1 4.4056 7.4320 0.8853 33 1 4.4053 7.4298 -0.8946 34 1 2.2433 8.6451 -0.8948 35 1 2.2443 8.6467 0.8851 36 1 1.3954 12.1171 -0.0076 37 1 6.6818 0.6237 0.0022 38 1 4.4574 -0.7368 0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:54 Heat of formation + Delta-G solvation = 25.049105 kcal Electronic energy + Delta-G solvation = -20080.673702 eV Core-core repulsion = 16923.745800 eV Total energy + Delta-G solvation = -3156.927901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59419 -39.07788 -37.79967 -35.67768 -33.51859 -31.80860 -30.96703 -29.70326 -28.48820 -27.32531 -26.17339 -23.36671 -22.70167 -21.85204 -20.58150 -20.41353 -18.89513 -17.61017 -16.87749 -16.30486 -15.87259 -15.86871 -15.13860 -14.96553 -14.54721 -14.33476 -14.30017 -13.74245 -13.43811 -12.88053 -12.59009 -12.49503 -12.25932 -12.00014 -11.86207 -11.68794 -11.38385 -10.89757 -10.67917 -10.56026 -9.93648 -9.60184 -9.53101 -9.32765 -9.10520 -9.06945 -8.48983 -8.36334 -6.85213 -6.01049 -4.04007 1.26479 1.48644 2.65329 2.87563 3.28140 3.30668 3.36995 3.39644 3.52320 4.03405 4.44493 4.56208 4.73378 4.83599 4.96146 5.09315 5.14792 5.15088 5.34652 5.39612 5.50037 5.64288 5.78574 5.88584 5.89988 6.22939 6.26197 6.45926 6.67734 6.68345 6.81284 6.99821 7.24272 7.33005 7.47502 7.62773 7.65365 7.79159 7.98364 8.39635 8.47353 9.02722 9.60014 11.10259 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.003102 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.825496 B = 9024.451896 C = 9946.226882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.053 3.947 4 C 0.022 3.978 5 N -0.500 5.500 6 C 0.402 3.598 7 N -0.725 5.725 8 C 0.134 3.866 9 C -0.122 4.122 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.018 3.982 20 N -0.576 5.576 21 H 0.417 0.583 22 C 0.054 3.946 23 C -0.195 4.195 24 C -0.064 4.064 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.154 0.846 29 H 0.398 0.602 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.174 0.826 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -23.707 0.024 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.003 3.997 4 C -0.127 4.127 5 N -0.221 5.221 6 C 0.156 3.844 7 N -0.361 5.361 8 C 0.011 3.989 9 C -0.160 4.160 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.094 4.094 20 N -0.179 5.179 21 H 0.254 0.746 22 C -0.075 4.075 23 C -0.221 4.221 24 C -0.076 4.076 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.171 0.829 29 H 0.232 0.768 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.191 0.809 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.326 -22.869 0.029 23.110 hybrid contribution 1.403 0.680 -0.013 1.559 sum 4.728 -22.190 0.016 22.688 Atomic orbital electron populations 1.22998 0.78902 1.03535 1.01356 1.86013 1.20686 1.26317 1.89663 1.18965 0.90094 0.85400 1.05278 1.22062 0.99516 0.85807 1.05325 1.67083 1.07688 1.26261 1.21104 1.17529 0.87581 0.83700 0.95616 1.44734 1.08200 1.02139 1.80985 1.21484 0.93007 0.82765 1.01624 1.21888 0.99088 0.94505 1.00506 1.19010 0.94526 0.90065 0.97638 1.21213 0.92980 0.91004 1.50851 0.92752 1.25023 0.94929 0.99183 0.95317 1.69963 1.08587 1.24100 1.50617 0.86595 0.80388 0.82915 0.78083 1.20670 1.21186 1.19937 1.18478 0.84099 0.94476 1.12372 1.41612 1.04901 1.07540 1.63881 0.74579 1.21888 0.99807 0.82030 1.03801 1.21494 0.89537 0.98657 1.12366 1.18332 0.90621 0.92543 1.06068 0.92779 0.92786 0.88582 0.82898 0.76766 0.92187 0.92180 0.93038 0.93037 0.96278 0.96264 0.92939 0.80918 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.83 101.05 0.99 1.22 16 2 O -0.31 -3.92 10.53 -19.81 -0.21 -4.12 16 3 C 0.05 0.75 6.74 -38.90 -0.26 0.48 16 4 C 0.02 0.32 10.22 -17.39 -0.18 0.14 16 5 N -0.50 -8.46 9.54 -12.19 -0.12 -8.57 16 6 C 0.40 6.34 7.52 -154.70 -1.16 5.18 16 7 N -0.73 -11.02 5.72 -60.24 -0.34 -11.37 16 8 C 0.13 2.42 5.71 -4.04 -0.02 2.40 16 9 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 10 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 11 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 12 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.02 0.25 7.16 -83.81 -0.60 -0.35 16 20 N -0.58 -5.68 6.06 -10.52 -0.06 -5.74 16 21 H 0.42 2.95 8.92 -40.82 -0.36 2.58 16 22 C 0.05 0.46 11.82 -16.73 -0.20 0.27 16 23 C -0.20 -2.14 11.07 -37.81 -0.42 -2.56 16 24 C -0.06 -0.90 6.39 -105.06 -0.67 -1.57 16 25 H 0.05 0.41 7.68 -51.93 -0.40 0.01 16 26 H 0.05 0.41 7.68 -51.93 -0.40 0.01 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.15 1.83 6.30 -52.48 -0.33 1.50 16 29 H 0.40 5.01 8.43 -40.82 -0.34 4.67 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -34.06 325.42 -8.51 -42.57 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.18 Total: 2.31 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -3.21 Total: -10.35 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.21 Total: -51.89 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.21 Total: -4.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.06 -8.51 -42.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.620 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds