Wall clock time and date at job start Mon Mar 30 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36020 * 116.99760 * 2 1 4 4 C 1.37848 * 120.66784 * 359.97266 * 3 2 1 5 5 N 1.32531 * 121.16022 * 180.02562 * 4 3 2 6 6 C 1.32153 * 122.49593 * 359.97438 * 5 4 3 7 7 N 1.39327 * 119.81336 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99970 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47185 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47437 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47411 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99446 * 0.02562 * 11 10 9 13 13 C 1.37866 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00221 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00246 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47255 * 90.00363 * 15 13 11 17 17 H 1.48498 * 109.47585 * 210.00488 * 15 13 11 18 18 H 1.48511 * 109.47070 * 330.00608 * 15 13 11 19 19 C 1.39689 * 120.37369 * 0.02562 * 6 5 4 20 20 N 1.37646 * 134.31400 * 180.02562 * 19 6 5 21 21 H 0.97004 * 125.05994 * 359.97438 * 20 19 6 22 22 C 1.36677 * 109.87019 * 179.97438 * 20 19 6 23 23 C 1.34454 * 109.88414 * 359.76348 * 22 20 19 24 24 C 1.40440 * 120.66055 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47008 * 299.99908 * 1 2 3 26 26 H 1.09002 * 109.46848 * 59.99890 * 1 2 3 27 27 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.41665 * 0.02562 * 4 3 2 29 29 H 0.97000 * 120.00122 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.46869 * 299.99960 * 8 7 6 31 31 H 1.08995 * 109.47544 * 59.99641 * 8 7 6 32 32 H 1.09003 * 109.46913 * 299.99601 * 9 8 7 33 33 H 1.08995 * 109.47443 * 59.99247 * 9 8 7 34 34 H 1.09003 * 109.46710 * 299.99684 * 10 9 8 35 35 H 1.08995 * 109.47453 * 59.99211 * 10 9 8 36 36 H 0.96994 * 120.00230 * 179.97438 * 14 13 11 37 37 H 1.07993 * 125.06114 * 179.97438 * 22 20 19 38 38 H 1.08001 * 126.51504 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3092 2.3767 -0.0006 5 7 1.9006 3.5627 -0.0011 6 6 3.2149 3.7006 -0.0006 7 7 3.7777 4.9752 -0.0017 8 6 2.9129 6.1577 -0.0029 9 6 3.7762 7.4209 -0.0046 10 6 2.8731 8.6559 -0.0052 11 6 3.7234 9.9001 -0.0062 12 1 4.8003 9.8181 -0.0069 13 6 3.1267 11.1429 -0.0074 14 7 1.8153 11.2428 -0.0071 15 14 4.1806 12.6852 -0.0080 16 1 4.4606 13.0929 -1.4083 17 1 3.4587 13.7785 0.6909 18 1 5.4608 12.4102 0.6927 19 6 4.0432 2.5758 0.0000 20 7 5.4064 2.3854 0.0010 21 1 6.0681 3.0947 0.0012 22 6 5.6887 1.0481 0.0017 23 6 4.5461 0.3395 0.0064 24 6 3.4480 1.3017 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2305 2.3217 -0.0006 29 1 4.7421 5.0796 -0.0017 30 1 2.2838 6.1469 -0.8929 31 1 2.2836 6.1486 0.8870 32 1 4.4056 7.4320 0.8853 33 1 4.4053 7.4298 -0.8946 34 1 2.2433 8.6451 -0.8948 35 1 2.2443 8.6467 0.8851 36 1 1.3954 12.1171 -0.0076 37 1 6.6818 0.6237 0.0022 38 1 4.4574 -0.7368 0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:54 Heat of formation + Delta-G solvation = 1.929631 kcal Electronic energy + Delta-G solvation = -20081.676237 eV Core-core repulsion = 16923.745800 eV Total energy + Delta-G solvation = -3157.930437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.52866 -39.98731 -38.89554 -37.06859 -35.35761 -33.40488 -32.11414 -30.71706 -29.67743 -28.22043 -27.78299 -25.04080 -23.70135 -23.05746 -22.10653 -21.45414 -19.86773 -18.63146 -18.48386 -17.90884 -16.81606 -16.81173 -16.51122 -16.29047 -16.13183 -15.48216 -15.45355 -14.80868 -14.27154 -14.25702 -14.13609 -13.79961 -13.38529 -13.37679 -13.25679 -12.79614 -12.66913 -12.51553 -12.41892 -12.32107 -11.67486 -11.48350 -11.18555 -10.75401 -10.55718 -10.48870 -10.08067 -9.39844 -8.19784 -7.93415 -6.31499 0.27138 0.45107 1.40640 1.42243 1.53135 1.82609 2.06511 2.23372 2.41873 2.52983 2.94496 3.13650 3.66761 3.73183 3.92814 4.20198 4.26240 4.27594 4.34467 4.36944 4.45216 4.60100 4.61814 4.74205 4.79280 5.00598 5.00768 5.09194 5.17421 5.35476 5.50461 5.61001 5.71665 5.82491 5.84031 6.11101 6.24143 6.42664 6.52477 6.62170 6.85751 7.37202 7.38764 8.92398 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.003102 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.825496 B = 9024.451896 C = 9946.226882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.324 6.324 3 C 0.054 3.946 4 C 0.000 4.000 5 N -0.536 5.536 6 C 0.383 3.617 7 N -0.721 5.721 8 C 0.154 3.846 9 C -0.102 4.102 10 C 0.026 3.974 11 C -0.542 4.542 12 H 0.065 0.935 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.261 1.261 19 C 0.008 3.992 20 N -0.565 5.565 21 H 0.432 0.568 22 C 0.084 3.916 23 C -0.220 4.220 24 C -0.092 4.092 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.168 0.832 29 H 0.411 0.589 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.063 0.937 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.224 0.776 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 -24.933 0.023 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C 0.004 3.996 4 C -0.148 4.148 5 N -0.257 5.257 6 C 0.137 3.863 7 N -0.358 5.358 8 C 0.030 3.970 9 C -0.140 4.140 10 C -0.011 4.011 11 C -0.580 4.580 12 H 0.083 0.917 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.105 4.105 20 N -0.169 5.169 21 H 0.271 0.729 22 C -0.046 4.046 23 C -0.244 4.244 24 C -0.104 4.104 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.185 0.815 29 H 0.248 0.752 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.241 0.759 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.046 -24.131 0.027 24.877 hybrid contribution 0.542 0.898 -0.014 1.049 sum 6.587 -23.233 0.014 24.149 Atomic orbital electron populations 1.23294 0.76895 1.05511 1.01874 1.85998 1.22809 1.25558 1.89345 1.19124 0.90676 0.85743 1.04042 1.22275 1.00337 0.85633 1.06579 1.67000 1.08844 1.27700 1.22206 1.17639 0.87853 0.84109 0.96677 1.44386 1.08395 1.01203 1.81854 1.20982 0.92647 0.83354 1.00031 1.21590 0.98200 0.92706 1.01518 1.18910 0.94680 0.92525 0.95012 1.21680 0.93745 0.92038 1.50556 0.91720 1.26023 0.96245 1.03056 0.94751 1.70111 1.10633 1.25097 1.51626 0.85415 0.78781 0.78162 0.78477 1.19782 1.20919 1.18491 1.18361 0.85787 0.93610 1.12755 1.41730 1.03690 1.08816 1.62661 0.72857 1.22667 1.01244 0.80857 0.99818 1.21799 0.89271 0.99336 1.14012 1.18849 0.91363 0.93750 1.06399 0.92268 0.92277 0.85877 0.81525 0.75223 0.93913 0.93906 0.91898 0.91875 0.98992 0.98976 0.92777 0.75911 0.81929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.83 113.37 1.11 1.41 16 2 O -0.32 -7.92 10.53 -93.78 -0.99 -8.91 16 3 C 0.05 1.55 6.74 22.71 0.15 1.70 16 4 C 0.00 -0.01 10.22 84.49 0.86 0.86 16 5 N -0.54 -18.84 9.54 -192.48 -1.84 -20.67 16 6 C 0.38 12.22 7.52 133.16 1.00 13.22 16 7 N -0.72 -21.88 5.72 -344.50 -1.97 -23.85 16 8 C 0.15 5.74 5.71 86.38 0.49 6.24 16 9 C -0.10 -4.11 5.27 30.59 0.16 -3.95 16 10 C 0.03 1.41 4.97 29.85 0.15 1.56 16 11 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 12 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 14 N -0.93 -57.61 13.29 21.44 0.28 -57.33 16 15 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 C 0.01 0.22 7.16 39.16 0.28 0.50 16 20 N -0.57 -9.57 6.06 -187.21 -1.13 -10.70 16 21 H 0.43 4.72 8.92 -92.71 -0.83 3.89 16 22 C 0.08 1.11 11.82 83.07 0.98 2.09 16 23 C -0.22 -4.29 11.07 23.42 0.26 -4.03 16 24 C -0.09 -2.50 6.39 -20.15 -0.13 -2.63 16 25 H 0.06 0.87 7.68 -2.39 -0.02 0.86 16 26 H 0.06 0.87 7.68 -2.39 -0.02 0.85 16 27 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.17 4.18 6.30 -2.91 -0.02 4.16 16 29 H 0.41 9.88 8.43 -92.71 -0.78 9.10 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.22 0.62 8.06 -2.91 -0.02 0.60 16 38 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -76.00 325.42 1.89 -74.12 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -0.52 Total: 14.44 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 6.02 Total: -13.29 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.66 Total: -112.55 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.99 Total: -8.91 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -76.00 1.89 -74.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.045 kcal (2) G-P(sol) polarization free energy of solvation -76.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds