Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46747 * 125.62519 * 2 1 4 4 C 1.50718 * 106.19430 * 180.02562 * 3 2 1 5 5 C 1.37696 * 133.41070 * 179.97438 * 4 3 2 6 6 C 1.39573 * 118.21545 * 180.02562 * 5 4 3 7 7 N 1.39078 * 120.52071 * 180.02562 * 6 5 4 8 8 C 1.46496 * 119.99850 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46995 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99685 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46879 * 60.00177 * 15 13 11 17 17 H 1.48494 * 109.47196 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47151 * 300.00589 * 15 13 11 19 19 C 1.39510 * 118.96250 * 0.26711 * 6 5 4 20 20 N 1.31228 * 121.05880 * 359.43275 * 19 6 5 21 21 C 1.33107 * 121.79824 * 0.58759 * 20 19 6 22 22 C 1.34388 * 125.62937 * 180.02562 * 2 1 3 23 23 O 1.21555 * 124.81993 * 359.97438 * 22 2 1 24 24 H 1.09005 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47258 * 300.00042 * 1 2 3 26 26 H 1.08998 * 109.46967 * 60.00192 * 1 2 3 27 27 H 1.09002 * 110.10984 * 60.83662 * 3 2 1 28 28 H 1.08994 * 110.10660 * 299.19774 * 3 2 1 29 29 H 1.08001 * 120.89251 * 0.02562 * 5 4 3 30 30 H 0.96998 * 119.99958 * 359.97438 * 7 6 5 31 31 H 1.09001 * 109.47464 * 60.00435 * 8 7 6 32 32 H 1.09001 * 109.47459 * 300.00150 * 8 7 6 33 33 H 1.09001 * 109.47002 * 299.99701 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00138 * 9 8 7 35 35 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 36 36 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 37 37 H 0.96999 * 119.99910 * 179.97438 * 14 13 11 38 38 H 1.08004 * 119.47517 * 179.72565 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3198 1.1928 0.0000 4 6 3.7411 0.6914 -0.0006 5 6 4.9663 1.3199 -0.0014 6 6 6.1148 0.5269 -0.0024 7 7 7.3768 1.1114 -0.0026 8 6 8.5746 0.2680 -0.0031 9 6 9.8221 1.1540 -0.0026 10 6 11.0731 0.2732 -0.0038 11 6 12.3017 1.1458 -0.0040 12 1 12.2005 2.2210 -0.0029 13 6 13.5553 0.5714 -0.0044 14 7 13.6786 -0.7380 -0.0052 15 14 15.0783 1.6530 -0.0039 16 1 15.0766 2.5096 1.2092 17 1 16.2925 0.7982 -0.0051 18 1 15.0764 2.5112 -1.2158 19 6 5.9771 -0.8614 -0.0083 20 7 4.7917 -1.4242 -0.0018 21 6 3.6729 -0.7031 -0.0009 22 6 2.2479 -1.0923 -0.0005 23 8 1.8411 -2.2378 -0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.1327 1.7880 0.8938 28 1 2.1322 1.7882 -0.8935 29 1 5.0366 2.3977 -0.0012 30 1 7.4638 2.0775 -0.0024 31 1 8.5757 -0.3611 -0.8932 32 1 8.5762 -0.3615 0.8867 33 1 9.8208 1.7837 -0.8923 34 1 9.8208 1.7827 0.8877 35 1 11.0747 -0.3570 0.8856 36 1 11.0742 -0.3554 -0.8944 37 1 14.5604 -1.1420 -0.0059 38 1 6.8603 -1.4830 -0.0136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = -15.078661 kcal Electronic energy + Delta-G solvation = -19739.836938 eV Core-core repulsion = 16581.168966 eV Total energy + Delta-G solvation = -3158.667972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35431 -40.19582 -37.93323 -37.21146 -35.60840 -33.81361 -33.32738 -31.22718 -28.56875 -28.35398 -27.28016 -25.13318 -24.47784 -22.58765 -22.06475 -21.06132 -18.72408 -18.53321 -17.95971 -17.76192 -17.26371 -16.63118 -16.39345 -16.36508 -15.99601 -14.97548 -14.95738 -14.70505 -14.46114 -14.27768 -14.16294 -13.90188 -13.77890 -13.55037 -13.46334 -13.15340 -12.77771 -12.52311 -12.39679 -11.98475 -11.48322 -11.44639 -11.41196 -11.20232 -10.54545 -10.52832 -10.29317 -9.82053 -8.63912 -8.19506 -6.30252 -0.24292 0.23252 1.42052 1.44047 1.51992 1.64189 1.73012 2.15256 2.42498 2.85468 3.02144 3.14689 3.31139 3.74382 3.87949 3.96847 4.10812 4.23640 4.29068 4.42220 4.47570 4.52227 4.58882 4.70943 4.87037 4.90182 4.96321 4.96394 5.02105 5.18639 5.35906 5.50075 5.52304 5.73375 5.80347 5.85715 5.99098 6.24381 6.61296 6.85596 6.87868 7.10551 7.39330 8.91964 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.058629 B = 0.002536 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.463205 B =11040.042002 C =11481.106973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.611 5.611 3 C 0.149 3.851 4 C -0.071 4.071 5 C -0.137 4.137 6 C 0.209 3.791 7 N -0.706 5.706 8 C 0.123 3.877 9 C -0.103 4.103 10 C 0.023 3.977 11 C -0.542 4.542 12 H 0.064 0.936 13 C -0.002 4.002 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.266 1.266 17 H -0.288 1.288 18 H -0.266 1.266 19 C 0.009 3.991 20 N -0.428 5.428 21 C -0.061 4.061 22 C 0.560 3.440 23 O -0.576 6.576 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.185 0.815 30 H 0.417 0.583 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.065 0.935 35 H -0.005 1.005 36 H -0.005 1.005 37 H 0.263 0.737 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.402 11.859 0.002 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.344 5.344 3 C 0.027 3.973 4 C -0.075 4.075 5 C -0.167 4.167 6 C 0.096 3.904 7 N -0.331 5.331 8 C -0.001 4.001 9 C -0.140 4.140 10 C -0.015 4.015 11 C -0.580 4.580 12 H 0.082 0.918 13 C -0.200 4.200 14 N -0.574 5.574 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.159 4.159 20 N -0.137 5.137 21 C -0.200 4.200 22 C 0.349 3.651 23 O -0.456 6.456 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.202 0.798 30 H 0.255 0.745 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.546 10.124 0.005 26.552 hybrid contribution 1.476 0.665 0.003 1.619 sum -23.070 10.789 0.008 25.468 Atomic orbital electron populations 1.21840 0.73822 1.03816 1.04560 1.47828 1.07665 1.06261 1.72687 1.20762 0.82349 0.87044 1.07140 1.21217 0.96937 0.94036 0.95293 1.20378 0.87459 1.01839 1.06990 1.19086 0.87138 0.93271 0.90875 1.44692 1.01362 1.09714 1.77361 1.21490 0.83409 0.93811 1.01352 1.21555 0.92436 0.98110 1.01943 1.18945 0.92426 0.94816 0.95290 1.21668 0.92082 0.93816 1.50425 0.91751 1.25982 1.02852 0.96280 0.94909 1.70086 1.24436 1.11187 1.51662 0.85530 0.77984 0.78507 0.79212 1.19107 1.21316 1.19113 1.22508 0.94412 0.91898 1.07035 1.66646 0.98062 1.42250 1.06758 1.21061 0.93076 0.92791 1.13101 1.18140 0.86011 0.84812 0.76158 1.90719 1.80058 1.22164 1.52697 0.91596 0.88767 0.88766 0.84664 0.84669 0.79802 0.74452 0.92051 0.92071 0.91652 0.91652 0.98677 0.98672 0.92852 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 11.25 127.77 1.44 2.44 16 2 N -0.61 -10.60 3.37 -854.64 -2.88 -13.47 16 3 C 0.15 1.45 7.38 85.59 0.63 2.08 16 4 C -0.07 -1.29 6.38 -19.65 -0.13 -1.42 16 5 C -0.14 -2.19 10.03 22.46 0.23 -1.96 16 6 C 0.21 4.65 6.69 38.62 0.26 4.90 16 7 N -0.71 -14.81 5.71 -338.84 -1.94 -16.75 16 8 C 0.12 3.44 4.92 86.38 0.42 3.86 16 9 C -0.10 -3.49 5.27 30.60 0.16 -3.33 16 10 C 0.02 1.11 4.97 29.85 0.15 1.26 16 11 C -0.54 -29.03 9.11 25.60 0.23 -28.80 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 14 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 15 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 C 0.01 0.27 10.47 85.09 0.89 1.16 16 20 N -0.43 -14.46 10.38 -184.28 -1.91 -16.37 16 21 C -0.06 -1.77 7.41 41.79 0.31 -1.46 16 22 C 0.56 16.63 7.97 86.81 0.69 17.33 16 23 O -0.58 -22.40 17.47 -3.89 -0.07 -22.46 16 24 H 0.07 0.98 7.63 -2.38 -0.02 0.96 16 25 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.42 6.62 8.49 -92.71 -0.79 5.83 16 31 H 0.06 1.78 7.95 -2.39 -0.02 1.77 16 32 H 0.06 1.78 7.97 -2.39 -0.02 1.76 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.16 4.47 6.74 -2.91 -0.02 4.45 16 Total: -1.00 -79.19 326.42 1.55 -77.64 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.29 Total: 5.56 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.75 Total: -3.61 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -6.44 Total: -101.84 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.07 Total: -22.46 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -79.19 1.55 -77.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.559 kcal (2) G-P(sol) polarization free energy of solvation -79.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds