Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46755 * 124.35157 * 2 1 4 4 C 1.54482 * 105.47642 * 162.96181 * 3 2 1 5 5 H 1.08994 * 110.99975 * 267.28803 * 4 3 2 6 6 C 1.52992 * 110.97260 * 143.52895 * 4 3 2 7 7 N 1.46499 * 109.47189 * 181.16602 * 6 4 3 8 8 C 1.38827 * 120.00290 * 179.97438 * 7 6 4 9 9 C 1.39797 * 119.58147 * 0.02562 * 8 7 6 10 10 C 1.38597 * 119.49079 * 180.02562 * 9 8 7 11 11 C 1.38394 * 118.67880 * 359.97438 * 10 9 8 12 12 C 1.40556 * 119.14743 * 0.28129 * 11 10 9 13 13 C 1.41311 * 119.78015 * 179.69956 * 12 11 10 14 14 H 1.08007 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.40031 * 120.00128 * 180.02562 * 13 12 11 16 16 N 1.30749 * 119.99480 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00330 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47080 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47349 * 119.99296 * 17 15 13 20 20 H 1.48503 * 109.46723 * 239.99925 * 17 15 13 21 21 N 1.31951 * 119.58747 * 180.02562 * 8 7 6 22 22 C 1.54637 * 101.76039 * 25.41384 * 4 3 2 23 23 C 1.34420 * 124.34308 * 179.97438 * 2 1 3 24 24 O 1.21279 * 124.94655 * 0.39574 * 23 2 1 25 25 H 1.08993 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46926 * 300.00214 * 1 2 3 27 27 H 1.09005 * 109.46538 * 59.99946 * 1 2 3 28 28 H 1.08994 * 110.24908 * 43.96119 * 3 2 1 29 29 H 1.09007 * 110.24587 * 281.95789 * 3 2 1 30 30 H 1.09004 * 109.47124 * 61.17437 * 6 4 3 31 31 H 1.09001 * 109.47722 * 301.17016 * 6 4 3 32 32 H 0.97003 * 120.00079 * 0.02562 * 7 6 4 33 33 H 1.07999 * 120.25577 * 359.97438 * 9 8 7 34 34 H 1.08001 * 120.66258 * 179.97438 * 10 9 8 35 35 H 1.08002 * 120.42156 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99646 * 180.02562 * 16 15 13 37 37 H 1.08991 * 110.48788 * 93.88557 * 22 4 3 38 38 H 1.09007 * 110.48395 * 216.39246 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4362 5 1 3.8271 0.8450 1.5146 6 6 4.7881 1.5237 -0.3109 7 7 6.1066 1.0403 0.1065 8 6 7.2550 1.5971 -0.4399 9 6 7.1431 2.6189 -1.3874 10 6 8.2907 3.1730 -1.9321 11 6 9.5210 2.6939 -1.5172 12 6 9.5678 1.6609 -0.5652 13 6 10.8166 1.1572 -0.1368 14 1 11.7311 1.5657 -0.5411 15 6 10.8686 0.1278 0.8110 16 7 9.7615 -0.3670 1.3000 17 14 12.5195 -0.5376 1.3778 18 1 13.6114 0.1862 0.6786 19 1 12.6551 -0.3423 2.8436 20 1 12.6044 -1.9861 1.0613 21 7 8.4383 1.1552 -0.0585 22 6 3.6897 -0.7380 0.0110 23 6 2.2234 -1.1099 0.0005 24 8 1.7945 -2.2443 -0.0059 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8983 1.9384 0.7098 29 1 2.3311 1.6426 -1.0005 30 1 4.7009 2.5855 -0.0805 31 1 4.6691 1.3737 -1.3839 32 1 6.1773 0.3307 0.7641 33 1 6.1698 2.9733 -1.6932 34 1 8.2263 3.9630 -2.6657 35 1 10.4334 3.1056 -1.9229 36 1 9.7975 -1.0799 1.9568 37 1 4.1197 -0.8534 -0.9839 38 1 4.2344 -1.3456 0.7338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168723957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = 6.000503 kcal Electronic energy + Delta-G solvation = -20497.497395 eV Core-core repulsion = 17339.743484 eV Total energy + Delta-G solvation = -3157.753911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55200 -38.29950 -36.89731 -35.22619 -33.52026 -32.44477 -30.39635 -29.20431 -27.94009 -26.92933 -25.35731 -24.55228 -21.67567 -20.90622 -20.30640 -19.61985 -17.41220 -16.93189 -16.70472 -16.03202 -15.45769 -14.88484 -14.72064 -14.58544 -14.24548 -13.84533 -13.57507 -13.27812 -13.08549 -12.88780 -12.55287 -12.51334 -12.18786 -11.94786 -11.67342 -11.39746 -11.18742 -11.01485 -10.96801 -10.61403 -10.43734 -9.90983 -9.87142 -9.50934 -8.93294 -8.90892 -7.92292 -7.52382 -6.54938 -6.33687 -4.48019 2.49409 2.82920 2.86109 3.12109 3.16245 3.22435 3.29034 3.94588 3.98749 4.22602 4.45527 4.69944 4.82800 4.86065 5.05050 5.11935 5.25040 5.33635 5.43326 5.46955 5.68609 5.76800 5.91648 6.03028 6.13035 6.13955 6.30789 6.54924 6.83687 6.88154 6.90434 6.92643 7.24242 7.57892 7.79340 7.90093 8.04837 8.15946 8.34458 8.65196 8.79442 9.10461 10.23426 10.39382 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.003915 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.785310 B = 7151.095993 C = 8130.345842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.627 5.627 3 C 0.112 3.888 4 C -0.111 4.111 5 H 0.098 0.902 6 C 0.154 3.846 7 N -0.739 5.739 8 C 0.411 3.589 9 C -0.368 4.368 10 C -0.032 4.032 11 C -0.316 4.316 12 C 0.292 3.708 13 C -0.434 4.434 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.715 5.715 17 Si 0.904 3.096 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.274 1.274 21 N -0.531 5.531 22 C -0.150 4.150 23 C 0.519 3.481 24 O -0.537 6.537 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.269 0.731 37 H 0.110 0.890 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 2.772 -0.192 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.362 5.362 3 C -0.012 4.012 4 C -0.130 4.130 5 H 0.116 0.884 6 C 0.028 3.972 7 N -0.376 5.376 8 C 0.171 3.829 9 C -0.394 4.394 10 C -0.057 4.057 11 C -0.339 4.339 12 C 0.165 3.835 13 C -0.466 4.466 14 H 0.101 0.899 15 C -0.154 4.154 16 N -0.337 5.337 17 Si 0.729 3.271 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.199 1.199 21 N -0.252 5.252 22 C -0.190 4.190 23 C 0.307 3.693 24 O -0.414 6.414 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.128 0.872 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.056 1.482 0.454 14.142 hybrid contribution 0.580 0.271 -0.153 0.658 sum -13.476 1.753 0.300 13.593 Atomic orbital electron populations 1.21542 0.78257 1.03646 1.01419 1.48185 1.06452 1.07559 1.74020 1.22048 0.89713 0.87074 1.02350 1.22383 0.93952 0.94587 1.02059 0.88417 1.20971 0.81679 0.97065 0.97497 1.44042 1.01493 1.43248 1.48839 1.18487 0.87414 0.88458 0.88541 1.20589 0.97176 1.09533 1.12088 1.20596 0.92838 0.96207 0.96009 1.21544 0.96039 1.07164 1.09178 1.18194 0.90956 0.87296 0.87032 1.19627 0.92405 1.15117 1.19418 0.89862 1.26049 0.97590 0.96118 0.95617 1.70155 1.27630 1.17402 1.18507 0.86327 0.82608 0.79179 0.79003 1.18461 1.19950 1.19936 1.68197 0.95112 1.31461 1.30473 1.22442 0.93806 0.97051 1.05664 1.21067 0.89558 0.84183 0.74488 1.90709 1.78838 1.21229 1.50608 0.90029 0.92123 0.92099 0.90013 0.90500 0.92370 0.92597 0.76896 0.89223 0.88974 0.88733 0.91983 0.87176 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.14 59.85 0.67 1.42 16 2 N -0.63 -6.57 3.33 -180.29 -0.60 -7.17 16 3 C 0.11 0.94 6.91 -3.13 -0.02 0.92 16 4 C -0.11 -1.14 3.22 -88.99 -0.29 -1.43 16 5 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 6 C 0.15 2.03 4.16 -4.05 -0.02 2.01 16 7 N -0.74 -13.53 5.57 -60.40 -0.34 -13.87 16 8 C 0.41 9.62 7.65 -155.32 -1.19 8.43 16 9 C -0.37 -8.14 9.34 -38.87 -0.36 -8.50 16 10 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 11 C -0.32 -7.90 9.83 -38.65 -0.38 -8.28 16 12 C 0.29 8.03 6.55 -85.00 -0.56 7.47 16 13 C -0.43 -11.65 9.14 -37.74 -0.34 -12.00 16 14 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 15 C 0.07 1.81 5.50 -17.34 -0.10 1.72 16 16 N -0.72 -18.78 11.46 55.55 0.64 -18.14 16 17 Si 0.90 18.62 29.56 -169.99 -5.02 13.59 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 N -0.53 -14.34 7.89 -10.33 -0.08 -14.43 16 22 C -0.15 -1.80 6.12 -26.74 -0.16 -1.96 16 23 C 0.52 7.01 8.02 -10.86 -0.09 6.92 16 24 O -0.54 -9.32 17.35 5.56 0.10 -9.23 16 25 H 0.08 0.76 7.53 -51.93 -0.39 0.37 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 30 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 31 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 32 H 0.40 7.29 8.46 -40.82 -0.35 6.94 16 33 H 0.09 1.72 6.68 -52.49 -0.35 1.37 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 37 H 0.11 1.38 7.85 -51.93 -0.41 0.97 16 38 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -32.21 321.36 -8.93 -41.14 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.23 Total: 7.66 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.24 Total: -4.40 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.38 Total: -53.61 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.10 Total: -9.23 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.21 -8.93 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168723957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.139 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds