Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46755 * 124.35157 * 2 1 4 4 C 1.54482 * 105.47642 * 162.96181 * 3 2 1 5 5 H 1.08994 * 110.99975 * 267.28803 * 4 3 2 6 6 C 1.52992 * 110.97260 * 143.52895 * 4 3 2 7 7 N 1.46499 * 109.47189 * 181.16602 * 6 4 3 8 8 C 1.38827 * 120.00290 * 179.97438 * 7 6 4 9 9 C 1.39797 * 119.58147 * 0.02562 * 8 7 6 10 10 C 1.38597 * 119.49079 * 180.02562 * 9 8 7 11 11 C 1.38394 * 118.67880 * 359.97438 * 10 9 8 12 12 C 1.40556 * 119.14743 * 0.28129 * 11 10 9 13 13 C 1.41311 * 119.78015 * 179.69956 * 12 11 10 14 14 H 1.08007 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.40031 * 120.00128 * 180.02562 * 13 12 11 16 16 N 1.30749 * 119.99480 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00330 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47080 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47349 * 119.99296 * 17 15 13 20 20 H 1.48503 * 109.46723 * 239.99925 * 17 15 13 21 21 N 1.31951 * 119.58747 * 180.02562 * 8 7 6 22 22 C 1.54637 * 101.76039 * 25.41384 * 4 3 2 23 23 C 1.34420 * 124.34308 * 179.97438 * 2 1 3 24 24 O 1.21279 * 124.94655 * 0.39574 * 23 2 1 25 25 H 1.08993 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46926 * 300.00214 * 1 2 3 27 27 H 1.09005 * 109.46538 * 59.99946 * 1 2 3 28 28 H 1.08994 * 110.24908 * 43.96119 * 3 2 1 29 29 H 1.09007 * 110.24587 * 281.95789 * 3 2 1 30 30 H 1.09004 * 109.47124 * 61.17437 * 6 4 3 31 31 H 1.09001 * 109.47722 * 301.17016 * 6 4 3 32 32 H 0.97003 * 120.00079 * 0.02562 * 7 6 4 33 33 H 1.07999 * 120.25577 * 359.97438 * 9 8 7 34 34 H 1.08001 * 120.66258 * 179.97438 * 10 9 8 35 35 H 1.08002 * 120.42156 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99646 * 180.02562 * 16 15 13 37 37 H 1.08991 * 110.48788 * 93.88557 * 22 4 3 38 38 H 1.09007 * 110.48395 * 216.39246 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4362 5 1 3.8271 0.8450 1.5146 6 6 4.7881 1.5237 -0.3109 7 7 6.1066 1.0403 0.1065 8 6 7.2550 1.5971 -0.4399 9 6 7.1431 2.6189 -1.3874 10 6 8.2907 3.1730 -1.9321 11 6 9.5210 2.6939 -1.5172 12 6 9.5678 1.6609 -0.5652 13 6 10.8166 1.1572 -0.1368 14 1 11.7311 1.5657 -0.5411 15 6 10.8686 0.1278 0.8110 16 7 9.7615 -0.3670 1.3000 17 14 12.5195 -0.5376 1.3778 18 1 13.6114 0.1862 0.6786 19 1 12.6551 -0.3423 2.8436 20 1 12.6044 -1.9861 1.0613 21 7 8.4383 1.1552 -0.0585 22 6 3.6897 -0.7380 0.0110 23 6 2.2234 -1.1099 0.0005 24 8 1.7945 -2.2443 -0.0059 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8983 1.9384 0.7098 29 1 2.3311 1.6426 -1.0005 30 1 4.7009 2.5855 -0.0805 31 1 4.6691 1.3737 -1.3839 32 1 6.1773 0.3307 0.7641 33 1 6.1698 2.9733 -1.6932 34 1 8.2263 3.9630 -2.6657 35 1 10.4334 3.1056 -1.9229 36 1 9.7975 -1.0799 1.9568 37 1 4.1197 -0.8534 -0.9839 38 1 4.2344 -1.3456 0.7338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168723957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -14.789275 kcal Electronic energy + Delta-G solvation = -20498.398907 eV Core-core repulsion = 17339.743484 eV Total energy + Delta-G solvation = -3158.655423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51130 -40.04469 -38.06127 -36.55467 -35.21240 -33.68679 -32.20656 -30.77690 -29.01934 -27.85463 -27.17002 -25.62388 -23.38840 -22.36022 -21.61796 -20.60071 -19.22858 -18.06027 -17.86943 -17.31256 -16.52163 -16.44869 -16.29805 -15.91082 -15.63079 -15.05130 -14.71258 -14.65266 -14.45897 -14.28473 -13.77893 -13.47232 -13.31195 -13.21646 -12.93555 -12.77736 -12.69643 -12.52805 -12.34954 -12.12299 -11.91576 -11.67973 -11.27695 -10.94541 -10.59652 -9.78324 -9.75000 -9.40066 -8.23656 -8.20001 -6.44212 1.09331 1.39716 1.43080 1.45901 1.57521 1.59294 2.01848 2.26664 2.68231 2.95806 3.29390 3.51735 3.74135 3.99186 4.10774 4.33214 4.41499 4.44137 4.50122 4.60158 4.68740 4.73416 4.79506 4.82066 4.86552 4.95491 5.04308 5.05335 5.15527 5.20662 5.41207 5.52839 5.76415 6.00730 6.01810 6.12195 6.26757 6.60992 6.87718 7.00021 7.06535 7.26683 8.38982 8.54422 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.003915 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.785310 B = 7151.095993 C = 8130.345842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.621 5.621 3 C 0.115 3.885 4 C -0.097 4.097 5 H 0.104 0.896 6 C 0.152 3.848 7 N -0.733 5.733 8 C 0.394 3.606 9 C -0.363 4.363 10 C -0.031 4.031 11 C -0.347 4.347 12 C 0.260 3.740 13 C -0.473 4.473 14 H 0.083 0.917 15 C 0.028 3.972 16 N -0.751 5.751 17 Si 0.983 3.017 18 H -0.257 1.257 19 H -0.267 1.267 20 H -0.269 1.269 21 N -0.567 5.567 22 C -0.149 4.149 23 C 0.510 3.490 24 O -0.587 6.587 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.393 0.607 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.275 0.725 37 H 0.103 0.897 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 4.312 -0.272 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.007 4.007 4 C -0.116 4.116 5 H 0.122 0.878 6 C 0.028 3.972 7 N -0.369 5.369 8 C 0.153 3.847 9 C -0.389 4.389 10 C -0.055 4.055 11 C -0.370 4.370 12 C 0.133 3.867 13 C -0.505 4.505 14 H 0.102 0.898 15 C -0.194 4.194 16 N -0.373 5.373 17 Si 0.804 3.196 18 H -0.180 1.180 19 H -0.192 1.192 20 H -0.193 1.193 21 N -0.289 5.289 22 C -0.189 4.189 23 C 0.299 3.701 24 O -0.468 6.468 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.227 0.773 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.481 3.082 0.363 15.788 hybrid contribution 0.816 -0.117 -0.189 0.846 sum -14.664 2.964 0.174 14.962 Atomic orbital electron populations 1.21755 0.76683 1.03242 1.03692 1.48338 1.07581 1.07300 1.72160 1.22217 0.87777 0.86457 1.04275 1.22256 0.94497 0.92749 1.02076 0.87756 1.21221 0.79724 0.98127 0.98127 1.44248 1.02051 1.42578 1.48014 1.18969 0.87831 0.88935 0.88941 1.20992 0.98687 1.08387 1.10796 1.21025 0.92016 0.96454 0.95996 1.21687 0.97522 1.07810 1.10016 1.18637 0.91660 0.88381 0.88065 1.19944 0.92623 1.16803 1.21156 0.89842 1.26900 1.01552 0.95814 0.95134 1.70243 1.29871 1.18044 1.19164 0.85153 0.77566 0.78355 0.78548 1.18009 1.19165 1.19344 1.68163 0.96216 1.32776 1.31780 1.22393 0.93067 0.98372 1.05072 1.21272 0.90327 0.84206 0.74297 1.90677 1.79625 1.23239 1.53235 0.91846 0.89747 0.89839 0.86931 0.88708 0.90766 0.92016 0.77279 0.85656 0.85343 0.88330 0.91446 0.87886 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.14 127.77 1.42 2.61 16 2 N -0.62 -11.45 3.33 -842.91 -2.81 -14.26 16 3 C 0.12 1.47 6.91 86.83 0.60 2.07 16 4 C -0.10 -1.74 3.22 -9.74 -0.03 -1.78 16 5 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 6 C 0.15 3.56 4.16 86.38 0.36 3.92 16 7 N -0.73 -26.08 5.57 -344.99 -1.92 -28.00 16 8 C 0.39 18.25 7.65 133.42 1.02 19.27 16 9 C -0.36 -15.27 9.34 22.73 0.21 -15.06 16 10 C -0.03 -1.34 10.15 22.39 0.23 -1.11 16 11 C -0.35 -17.55 9.83 22.87 0.22 -17.32 16 12 C 0.26 14.70 6.55 40.18 0.26 14.97 16 13 C -0.47 -26.33 9.14 23.46 0.21 -26.11 16 14 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 15 C 0.03 1.43 5.50 85.29 0.47 1.90 16 16 N -0.75 -40.52 11.46 21.84 0.25 -40.27 16 17 Si 0.98 38.89 29.56 68.60 2.03 40.92 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 21 N -0.57 -31.27 7.89 -186.59 -1.47 -32.74 16 22 C -0.15 -3.48 6.12 30.59 0.19 -3.29 16 23 C 0.51 13.50 8.02 87.90 0.71 14.20 16 24 O -0.59 -20.83 17.35 -3.03 -0.05 -20.88 16 25 H 0.06 1.12 7.53 -2.39 -0.02 1.10 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.97 7.89 -2.38 -0.02 0.95 16 30 H 0.07 1.58 7.92 -2.39 -0.02 1.56 16 31 H 0.06 1.42 7.86 -2.39 -0.02 1.40 16 32 H 0.39 14.44 8.46 -92.71 -0.78 13.66 16 33 H 0.13 4.29 6.68 -2.91 -0.02 4.27 16 34 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 35 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 36 H 0.27 13.42 8.29 -92.71 -0.77 12.65 16 37 H 0.10 2.55 7.85 -2.39 -0.02 2.53 16 38 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -73.02 321.36 2.19 -70.84 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.29 Total: 30.14 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.88 Total: -5.74 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -5.95 Total: -115.28 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -73.02 2.19 -70.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168723957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.048 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds