Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46752 * 124.35243 * 2 1 4 4 C 1.54479 * 105.55213 * 197.08149 * 3 2 1 5 5 H 1.08996 * 110.97542 * 92.65738 * 4 3 2 6 6 C 1.53003 * 110.97347 * 216.42472 * 4 3 2 7 7 N 1.46496 * 109.47385 * 184.99632 * 6 4 3 8 8 C 1.39722 * 119.99694 * 179.97438 * 7 6 4 9 9 C 1.39328 * 120.36652 * 359.72009 * 8 7 6 10 10 N 1.31986 * 121.20872 * 179.69695 * 9 8 7 11 11 C 1.31499 * 122.05825 * 0.59914 * 10 9 8 12 12 C 1.40760 * 120.56199 * 359.69822 * 11 10 9 13 13 C 1.41427 * 120.62197 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99862 * 330.47695 * 13 12 11 15 15 C 1.39937 * 119.99639 * 150.48053 * 13 12 11 16 16 N 1.30830 * 119.99681 * 161.73270 * 15 13 12 17 17 Si 1.86794 * 120.00167 * 341.72857 * 15 13 12 18 18 H 1.48502 * 109.47089 * 95.41212 * 17 15 13 19 19 H 1.48500 * 109.46810 * 215.40983 * 17 15 13 20 20 H 1.48501 * 109.47361 * 335.40849 * 17 15 13 21 21 C 1.38665 * 120.35913 * 180.02562 * 8 7 6 22 22 C 1.54630 * 101.76247 * 334.53999 * 4 3 2 23 23 C 1.34625 * 124.46176 * 180.02562 * 2 1 3 24 24 O 1.21278 * 124.91297 * 359.55131 * 23 2 1 25 25 H 1.08999 * 109.46850 * 89.99795 * 1 2 3 26 26 H 1.08998 * 109.46822 * 209.99848 * 1 2 3 27 27 H 1.09004 * 109.46539 * 329.99783 * 1 2 3 28 28 H 1.09003 * 110.24678 * 78.03494 * 3 2 1 29 29 H 1.08995 * 110.24859 * 316.12540 * 3 2 1 30 30 H 1.09004 * 109.46624 * 305.00149 * 6 4 3 31 31 H 1.09006 * 109.46847 * 64.99429 * 6 4 3 32 32 H 0.96995 * 120.00072 * 359.97438 * 7 6 4 33 33 H 1.08004 * 119.39987 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.71841 * 179.72057 * 11 10 9 35 35 H 0.96992 * 120.00379 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.92685 * 0.02562 * 21 8 7 37 37 H 1.09001 * 110.48559 * 143.48173 * 22 4 3 38 38 H 1.09000 * 110.48560 * 265.98768 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7013 0.7508 -0.4371 5 1 3.8261 0.8472 -1.5156 6 6 4.7879 1.5274 0.3093 7 7 6.1037 1.1512 -0.2136 8 6 7.2583 1.7335 0.3155 9 6 7.1667 2.6771 1.3366 10 7 8.2467 3.2332 1.8527 11 6 9.4553 2.9380 1.4267 12 6 9.6409 1.9995 0.3942 13 6 10.9401 1.6806 -0.0645 14 1 11.7269 2.4189 -0.0142 15 6 11.2062 0.4086 -0.5836 16 7 12.2672 0.2130 -1.3236 17 14 10.0467 -1.0099 -0.2197 18 1 9.0774 -1.1556 -1.3353 19 1 10.8288 -2.2642 -0.0766 20 1 9.3122 -0.7378 1.0419 21 6 8.5074 1.3834 -0.1741 22 6 3.6926 -0.7359 -0.0119 23 6 2.2268 -1.1100 -0.0005 24 8 1.7997 -2.2450 0.0068 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 2.3310 1.6426 1.0005 29 1 1.8974 1.9389 -0.7087 30 1 4.6326 2.5969 0.1673 31 1 4.7382 1.2910 1.3723 32 1 6.1733 0.4979 -0.9272 33 1 6.1945 2.9546 1.7165 34 1 10.3128 3.4194 1.8732 35 1 12.4520 -0.6687 -1.6831 36 1 8.6090 0.6590 -0.9687 37 1 4.2358 -1.3430 -0.7362 38 1 4.1255 -0.8510 0.9818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168727329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = -7.024051 kcal Electronic energy + Delta-G solvation = -20531.757095 eV Core-core repulsion = 17373.438397 eV Total energy + Delta-G solvation = -3158.318698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68063 -38.75856 -37.09871 -35.51282 -33.91079 -33.02016 -31.15016 -29.34211 -27.93833 -26.87969 -25.69205 -24.43625 -22.49556 -21.02103 -20.57090 -19.78800 -17.51913 -17.04670 -16.85266 -16.21856 -15.73503 -15.51361 -15.05580 -14.79518 -14.61508 -14.05334 -13.91584 -13.55581 -13.32359 -12.95272 -12.71521 -12.68116 -12.41182 -12.26976 -12.08134 -11.72451 -11.54905 -11.32610 -11.14360 -10.84358 -10.38250 -10.05984 -10.00105 -9.70561 -9.45995 -9.03936 -8.15618 -8.04191 -7.05570 -6.73882 -4.61502 2.35248 2.54515 2.69808 2.74723 3.03070 3.16404 3.26936 3.72711 3.90614 4.05152 4.23943 4.47279 4.53648 4.70125 4.89103 5.01054 5.09524 5.16051 5.29555 5.36901 5.44851 5.48189 5.57175 5.72817 5.87476 5.93392 6.17125 6.18489 6.36830 6.44637 6.77197 6.79284 6.94249 7.23294 7.55658 7.65797 7.91116 8.00096 8.11848 8.27224 8.54698 8.67361 9.50987 9.95972 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.004228 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.037919 B = 6621.522987 C = 7515.790759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.627 5.627 3 C 0.111 3.889 4 C -0.112 4.112 5 H 0.098 0.902 6 C 0.144 3.856 7 N -0.755 5.755 8 C 0.200 3.800 9 C -0.103 4.103 10 N -0.436 5.436 11 C -0.033 4.033 12 C 0.079 3.921 13 C -0.434 4.434 14 H 0.096 0.904 15 C 0.085 3.915 16 N -0.801 5.801 17 Si 0.917 3.083 18 H -0.273 1.273 19 H -0.291 1.291 20 H -0.245 1.245 21 C -0.281 4.281 22 C -0.152 4.152 23 C 0.518 3.482 24 O -0.534 6.534 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.287 0.713 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 -0.033 -0.031 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.363 5.363 3 C -0.012 4.012 4 C -0.131 4.131 5 H 0.116 0.884 6 C 0.019 3.981 7 N -0.389 5.389 8 C 0.098 3.902 9 C -0.260 4.260 10 N -0.143 5.143 11 C -0.200 4.200 12 C 0.073 3.927 13 C -0.463 4.463 14 H 0.114 0.886 15 C -0.135 4.135 16 N -0.425 5.425 17 Si 0.744 3.256 18 H -0.199 1.199 19 H -0.218 1.218 20 H -0.169 1.169 21 C -0.311 4.311 22 C -0.192 4.192 23 C 0.306 3.694 24 O -0.411 6.411 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.225 0.775 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.686 -0.067 0.607 18.696 hybrid contribution -0.262 -1.528 -1.074 1.887 sum -18.948 -1.595 -0.467 19.021 Atomic orbital electron populations 1.21532 0.78031 1.03136 1.01856 1.48239 1.06491 1.07454 1.74069 1.22055 0.89562 0.87151 1.02471 1.22388 0.94185 0.94501 1.02013 0.88405 1.21099 0.81749 0.98183 0.97061 1.44364 1.02579 1.48958 1.42998 1.18519 0.85889 0.92619 0.93195 1.21249 0.96255 1.05264 1.03260 1.66874 0.99142 1.22164 1.26098 1.22402 0.93084 1.04805 0.99666 1.18392 0.93049 0.91350 0.89875 1.19479 0.95506 0.98817 1.32538 0.88641 1.26198 0.95388 1.00974 0.90987 1.69695 1.25335 1.25265 1.22160 0.86209 0.79597 0.78397 0.81402 1.19907 1.21843 1.16854 1.20783 0.90873 1.11662 1.07801 1.22476 0.94137 0.97017 1.05529 1.21058 0.89387 0.84228 0.74724 1.90719 1.78884 1.21159 1.50338 0.92616 0.90732 0.90924 0.90370 0.89906 0.91900 0.92158 0.77488 0.86259 0.85136 0.90281 0.87595 0.87839 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.97 59.85 0.66 1.35 16 2 N -0.63 -5.87 3.34 -180.23 -0.60 -6.47 16 3 C 0.11 0.79 6.91 -3.13 -0.02 0.77 16 4 C -0.11 -0.96 3.16 -88.99 -0.28 -1.24 16 5 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 6 C 0.14 1.60 4.22 -4.04 -0.02 1.58 16 7 N -0.76 -11.52 5.68 -58.57 -0.33 -11.85 16 8 C 0.20 4.06 6.66 -83.70 -0.56 3.50 16 9 C -0.10 -2.15 10.49 -17.08 -0.18 -2.33 16 10 N -0.44 -10.12 10.33 -12.37 -0.13 -10.25 16 11 C -0.03 -0.79 10.97 -16.74 -0.18 -0.97 16 12 C 0.08 1.97 5.12 -106.69 -0.55 1.42 16 13 C -0.43 -11.36 9.60 -37.73 -0.36 -11.72 16 14 H 0.10 2.59 8.06 -52.49 -0.42 2.16 16 15 C 0.08 2.15 5.42 -17.34 -0.09 2.06 16 16 N -0.80 -20.68 13.93 55.55 0.77 -19.91 16 17 Si 0.92 20.35 24.53 -169.99 -4.17 16.18 16 18 H -0.27 -5.78 6.70 56.52 0.38 -5.40 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.25 -5.68 6.86 56.52 0.39 -5.29 16 21 C -0.28 -6.50 7.15 -38.39 -0.27 -6.78 16 22 C -0.15 -1.55 6.36 -26.74 -0.17 -1.73 16 23 C 0.52 6.35 8.03 -10.77 -0.09 6.27 16 24 O -0.53 -8.70 17.60 5.56 0.10 -8.61 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 31 H 0.06 0.68 7.76 -51.93 -0.40 0.28 16 32 H 0.39 5.57 8.49 -40.82 -0.35 5.22 16 33 H 0.12 2.15 6.73 -52.48 -0.35 1.80 16 34 H 0.13 2.93 8.06 -52.49 -0.42 2.50 16 35 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 36 H 0.11 2.42 4.79 -52.49 -0.25 2.17 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.11 1.16 7.75 -51.93 -0.40 0.75 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -31.00 315.54 -6.84 -37.84 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.12 Total: 6.13 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.12 Total: -7.82 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.29 Total: -48.47 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.10 Total: -8.61 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.17 Total: 16.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.00 -6.84 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168727329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.816 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds