Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99821 * 2 1 4 4 H 1.08996 * 109.47376 * 329.99768 * 3 2 1 5 5 C 1.52991 * 109.47293 * 90.00048 * 3 2 1 6 6 C 1.53001 * 109.47062 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47243 * 299.99547 * 6 5 3 8 8 C 1.53005 * 109.46637 * 60.00257 * 7 6 5 9 9 H 1.08996 * 109.47190 * 59.99935 * 8 7 6 10 10 N 1.46500 * 109.47076 * 179.97438 * 8 7 6 11 11 C 1.38230 * 119.99971 * 274.68508 * 10 8 7 12 12 C 1.38985 * 119.99963 * 356.03798 * 11 10 8 13 13 H 1.08005 * 119.99843 * 314.45582 * 12 11 10 14 14 C 1.40815 * 120.00057 * 134.44889 * 12 11 10 15 15 N 1.30335 * 120.00092 * 336.70166 * 14 12 11 16 16 Si 1.86805 * 119.99970 * 156.69225 * 14 12 11 17 17 H 1.48502 * 109.47198 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47098 * 240.00387 * 16 14 12 19 19 H 1.48503 * 109.47050 * 120.00475 * 16 14 12 20 20 C 1.41149 * 120.00140 * 176.03989 * 11 10 8 21 21 C 1.43209 * 119.99829 * 354.64129 * 20 11 10 22 22 N 7.67978 * 157.70466 * 304.59912 * 2 1 3 23 23 C 1.43197 * 120.00240 * 174.63603 * 20 11 10 24 24 N 9.52429 * 132.90786 * 326.34659 * 2 1 3 25 25 C 1.53001 * 109.47094 * 299.99835 * 8 7 6 26 26 H 1.09001 * 109.47595 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47083 * 300.00265 * 1 2 3 28 28 H 1.08996 * 109.47016 * 60.00248 * 1 2 3 29 29 H 1.09010 * 109.47190 * 59.99708 * 5 3 2 30 30 H 1.09005 * 109.47489 * 299.99869 * 5 3 2 31 31 H 1.09011 * 109.46876 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47184 * 59.99980 * 6 5 3 33 33 H 1.08996 * 109.47383 * 300.00310 * 7 6 5 34 34 H 1.08996 * 109.47173 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00033 * 94.68137 * 10 8 7 36 36 H 0.96994 * 120.00087 * 354.48296 * 15 14 12 37 37 H 1.08998 * 109.47276 * 180.02562 * 25 8 7 38 38 H 1.08996 * 109.47184 * 300.00104 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4424 6 6 2.8405 3.1689 1.4423 7 6 4.1893 3.1261 0.7214 8 6 3.9818 2.6601 -0.7212 9 1 3.3169 3.3542 -1.2351 10 7 5.2732 2.6197 -1.4118 11 6 5.7782 3.7638 -2.0006 12 6 5.0245 4.9316 -2.0093 13 1 3.9784 4.8971 -2.2755 14 6 5.6249 6.1596 -1.6709 15 7 6.7001 6.1783 -0.9345 16 14 4.8803 7.7618 -2.2776 17 1 3.6713 7.4699 -3.0889 18 1 5.8738 8.4848 -3.1115 19 1 4.5038 8.6045 -1.1142 20 6 7.0592 3.7462 -2.5930 21 6 7.8824 2.5794 -2.4844 22 7 8.5347 1.6544 -2.3983 23 6 7.5357 4.8950 -3.3028 24 7 7.9134 5.8069 -3.8659 25 6 3.3590 1.2626 -0.7211 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.8830 1.0774 1.9563 30 1 1.2568 1.8015 1.9563 31 1 2.9887 3.5007 2.4701 32 1 2.1756 3.8630 0.9284 33 1 4.8542 2.4320 1.2353 34 1 4.6328 4.1217 0.7209 35 1 5.7739 1.7901 -1.4559 36 1 7.0413 5.3542 -0.5533 37 1 3.2116 0.9305 -1.7487 38 1 4.0239 0.5685 -0.2072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172917964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -15.149158 kcal Electronic energy + Delta-G solvation = -21179.825726 eV Core-core repulsion = 18021.154698 eV Total energy + Delta-G solvation = -3158.671029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.49585 -37.71448 -36.21877 -34.87624 -34.44654 -33.26589 -30.72914 -29.97226 -27.74534 -26.63273 -26.48554 -22.44225 -22.32660 -21.02375 -20.00825 -18.53529 -17.61455 -16.78955 -16.15124 -15.73176 -15.18619 -14.67967 -14.33254 -14.11881 -13.98297 -13.68547 -13.16238 -12.93815 -12.53578 -12.50739 -12.38683 -12.20882 -11.84891 -11.78016 -11.45956 -11.20841 -11.12350 -11.05544 -10.89444 -10.86196 -10.74941 -10.55229 -10.49849 -10.30613 -9.94639 -9.74196 -9.52718 -9.07048 -7.54002 -6.66837 -5.22251 2.66746 3.09893 3.23455 3.26841 3.50592 3.87341 3.88690 4.05463 4.16196 4.49262 4.59911 4.71137 4.85752 5.04604 5.09289 5.15505 5.24372 5.27815 5.31093 5.38218 5.49269 5.53542 5.57138 5.67920 5.70188 5.95936 6.00294 6.07192 6.16492 6.29792 6.41507 6.53313 6.60946 6.93691 7.10047 7.21054 7.48515 7.66145 8.04058 8.44367 8.55262 8.96690 9.35670 9.80315 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.005856 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.641190 B = 4780.194168 C = 5767.708005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.095 3.905 4 H 0.063 0.937 5 C -0.140 4.140 6 C -0.113 4.113 7 C -0.131 4.131 8 C 0.165 3.835 9 H 0.088 0.912 10 N -0.732 5.732 11 C 0.421 3.579 12 C -0.535 4.535 13 H 0.097 0.903 14 C 0.060 3.940 15 N -0.753 5.753 16 Si 1.060 2.940 17 H -0.273 1.273 18 H -0.265 1.265 19 H -0.275 1.275 20 C -0.320 4.320 21 C 0.304 3.696 22 N -0.539 5.539 23 C 0.332 3.668 24 N -0.522 5.522 25 C -0.127 4.127 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.385 0.615 36 H 0.303 0.697 37 H 0.072 0.928 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.504 -4.991 6.655 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.037 3.963 4 H 0.081 0.919 5 C -0.178 4.178 6 C -0.151 4.151 7 C -0.170 4.170 8 C 0.059 3.941 9 H 0.106 0.894 10 N -0.357 5.357 11 C 0.307 3.693 12 C -0.567 4.567 13 H 0.115 0.885 14 C -0.170 4.170 15 N -0.373 5.373 16 Si 0.882 3.118 17 H -0.198 1.198 18 H -0.189 1.189 19 H -0.201 1.201 20 C -0.340 4.340 21 C -0.002 4.002 22 N -0.222 5.222 23 C 0.023 3.977 24 N -0.203 5.203 25 C -0.165 4.165 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.219 0.781 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.696 -3.549 6.020 15.375 hybrid contribution -0.582 -1.878 0.244 1.981 sum -14.277 -5.426 6.264 16.508 Atomic orbital electron populations 1.22761 0.81410 1.02457 0.99902 1.87908 1.19367 1.28213 1.95088 1.22054 0.94567 0.84116 0.95554 0.91875 1.22061 1.01105 0.97810 0.96814 1.21440 0.97098 0.95790 1.00817 1.21982 0.96654 1.03130 0.95250 1.20642 0.85668 0.95117 0.92679 0.89413 1.45189 1.21658 1.11668 1.57148 1.17146 0.86780 0.84238 0.81183 1.20130 0.99990 0.91803 1.44811 0.88499 1.26961 0.93469 1.03562 0.92975 1.70166 1.14991 1.35384 1.16717 0.83679 0.76851 0.73815 0.77436 1.19804 1.18947 1.20075 1.12702 0.98729 0.90110 1.32434 1.25377 0.91887 0.92060 0.90865 1.81041 1.10786 1.13576 1.16792 1.24410 0.91559 0.91259 0.90501 1.81001 1.10660 1.11419 1.17236 1.21885 0.95484 0.97907 1.01200 0.89907 0.94182 0.94045 0.91201 0.92160 0.91617 0.91646 0.92253 0.90089 0.78073 0.88293 0.90887 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.39 -4.60 10.35 -35.23 -0.36 -4.97 16 3 C 0.10 1.07 2.61 -26.73 -0.07 1.00 16 4 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 5 C -0.14 -1.46 5.54 -26.73 -0.15 -1.61 16 6 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 7 C -0.13 -1.80 5.51 -26.73 -0.15 -1.95 16 8 C 0.16 2.36 2.33 -67.93 -0.16 2.20 16 9 H 0.09 1.30 6.52 -51.93 -0.34 0.96 16 10 N -0.73 -12.67 5.11 -51.92 -0.27 -12.93 16 11 C 0.42 8.69 5.67 -83.60 -0.47 8.21 16 12 C -0.53 -11.15 7.25 -38.33 -0.28 -11.43 16 13 H 0.10 1.90 6.98 -52.48 -0.37 1.54 16 14 C 0.06 1.32 3.89 -17.21 -0.07 1.25 16 15 N -0.75 -17.78 12.26 55.59 0.68 -17.10 16 16 Si 1.06 20.40 30.00 -169.99 -5.10 15.30 16 17 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.01 7.11 56.52 0.40 -4.60 16 20 C -0.32 -7.34 5.06 -104.94 -0.53 -7.87 16 21 C 0.30 7.02 14.10 -22.50 -0.32 6.70 16 22 N -0.54 -12.72 18.53 41.80 0.77 -11.94 16 23 C 0.33 8.35 12.08 -22.46 -0.27 8.08 16 24 N -0.52 -13.70 18.54 41.85 0.78 -12.93 16 25 C -0.13 -1.60 5.04 -26.73 -0.13 -1.74 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 28 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 35 H 0.39 6.68 7.47 -40.82 -0.30 6.38 16 36 H 0.30 7.26 7.34 -40.82 -0.30 6.96 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -26.31 326.89 -5.36 -31.66 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.12 Total: 5.18 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.66 Total: 2.80 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 1.97 Total: -54.90 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.36 Total: -4.97 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.10 Total: 15.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.31 -5.36 -31.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172917964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.514 kcal (2) G-P(sol) polarization free energy of solvation -26.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds