Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99821 * 2 1 4 4 H 1.08996 * 109.47376 * 329.99768 * 3 2 1 5 5 C 1.52991 * 109.47293 * 90.00048 * 3 2 1 6 6 C 1.53001 * 109.47062 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47243 * 299.99547 * 6 5 3 8 8 C 1.53005 * 109.46637 * 60.00257 * 7 6 5 9 9 H 1.08996 * 109.47190 * 59.99935 * 8 7 6 10 10 N 1.46500 * 109.47076 * 179.97438 * 8 7 6 11 11 C 1.38230 * 119.99971 * 274.68508 * 10 8 7 12 12 C 1.38985 * 119.99963 * 356.03798 * 11 10 8 13 13 H 1.08005 * 119.99843 * 314.45582 * 12 11 10 14 14 C 1.40815 * 120.00057 * 134.44889 * 12 11 10 15 15 N 1.30335 * 120.00092 * 336.70166 * 14 12 11 16 16 Si 1.86805 * 119.99970 * 156.69225 * 14 12 11 17 17 H 1.48502 * 109.47198 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47098 * 240.00387 * 16 14 12 19 19 H 1.48503 * 109.47050 * 120.00475 * 16 14 12 20 20 C 1.41149 * 120.00140 * 176.03989 * 11 10 8 21 21 C 1.43209 * 119.99829 * 354.64129 * 20 11 10 22 22 N 7.67978 * 157.70466 * 304.59912 * 2 1 3 23 23 C 1.43197 * 120.00240 * 174.63603 * 20 11 10 24 24 N 9.52429 * 132.90786 * 326.34659 * 2 1 3 25 25 C 1.53001 * 109.47094 * 299.99835 * 8 7 6 26 26 H 1.09001 * 109.47595 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47083 * 300.00265 * 1 2 3 28 28 H 1.08996 * 109.47016 * 60.00248 * 1 2 3 29 29 H 1.09010 * 109.47190 * 59.99708 * 5 3 2 30 30 H 1.09005 * 109.47489 * 299.99869 * 5 3 2 31 31 H 1.09011 * 109.46876 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47184 * 59.99980 * 6 5 3 33 33 H 1.08996 * 109.47383 * 300.00310 * 7 6 5 34 34 H 1.08996 * 109.47173 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00033 * 94.68137 * 10 8 7 36 36 H 0.96994 * 120.00087 * 354.48296 * 15 14 12 37 37 H 1.08998 * 109.47276 * 180.02562 * 25 8 7 38 38 H 1.08996 * 109.47184 * 300.00104 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4424 6 6 2.8405 3.1689 1.4423 7 6 4.1893 3.1261 0.7214 8 6 3.9818 2.6601 -0.7212 9 1 3.3169 3.3542 -1.2351 10 7 5.2732 2.6197 -1.4118 11 6 5.7782 3.7638 -2.0006 12 6 5.0245 4.9316 -2.0093 13 1 3.9784 4.8971 -2.2755 14 6 5.6249 6.1596 -1.6709 15 7 6.7001 6.1783 -0.9345 16 14 4.8803 7.7618 -2.2776 17 1 3.6713 7.4699 -3.0889 18 1 5.8738 8.4848 -3.1115 19 1 4.5038 8.6045 -1.1142 20 6 7.0592 3.7462 -2.5930 21 6 7.8824 2.5794 -2.4844 22 7 8.5347 1.6544 -2.3983 23 6 7.5357 4.8950 -3.3028 24 7 7.9134 5.8069 -3.8659 25 6 3.3590 1.2626 -0.7211 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.8830 1.0774 1.9563 30 1 1.2568 1.8015 1.9563 31 1 2.9887 3.5007 2.4701 32 1 2.1756 3.8630 0.9284 33 1 4.8542 2.4320 1.2353 34 1 4.6328 4.1217 0.7209 35 1 5.7739 1.7901 -1.4559 36 1 7.0413 5.3542 -0.5533 37 1 3.2116 0.9305 -1.7487 38 1 4.0239 0.5685 -0.2072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172917964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -29.702911 kcal Electronic energy + Delta-G solvation = -21180.456824 eV Core-core repulsion = 18021.154698 eV Total energy + Delta-G solvation = -3159.302127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56003 -39.06956 -37.54787 -36.71645 -36.13971 -34.81560 -32.07597 -31.03507 -29.10760 -28.28411 -27.25921 -23.64465 -23.40581 -22.48400 -21.03021 -20.30740 -19.26194 -18.07841 -17.36969 -16.64139 -16.07623 -15.98701 -15.58431 -15.55388 -15.14130 -14.90863 -14.66310 -14.38466 -14.10852 -14.01477 -13.66523 -13.48621 -13.39971 -13.35222 -12.88043 -12.72646 -12.60554 -12.57247 -12.21182 -12.06571 -11.96394 -11.87350 -11.62586 -11.43438 -11.36556 -11.13080 -10.71277 -10.39244 -9.27849 -8.34483 -6.97269 0.97566 1.54912 1.69147 1.75501 2.00673 2.23186 2.29813 2.33024 2.64273 2.82919 3.02483 3.42523 3.79407 3.83480 3.95905 4.02818 4.21092 4.31195 4.38061 4.48927 4.53150 4.59997 4.60405 4.64597 4.69137 4.89944 4.97994 5.09863 5.12338 5.17394 5.29116 5.35592 5.44093 5.46510 5.62237 5.78816 5.97660 6.32245 6.38679 6.82283 6.95660 7.14037 7.41793 8.04918 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.005856 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.641190 B = 4780.194168 C = 5767.708005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.097 3.903 4 H 0.075 0.925 5 C -0.134 4.134 6 C -0.106 4.106 7 C -0.126 4.126 8 C 0.164 3.836 9 H 0.090 0.910 10 N -0.722 5.722 11 C 0.428 3.572 12 C -0.534 4.534 13 H 0.115 0.885 14 C 0.039 3.961 15 N -0.778 5.778 16 Si 1.085 2.915 17 H -0.246 1.246 18 H -0.294 1.294 19 H -0.257 1.257 20 C -0.337 4.337 21 C 0.310 3.690 22 N -0.552 5.552 23 C 0.334 3.666 24 N -0.552 5.552 25 C -0.120 4.120 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.386 0.614 36 H 0.293 0.707 37 H 0.069 0.931 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.124 -5.339 7.373 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.039 3.961 4 H 0.093 0.907 5 C -0.172 4.172 6 C -0.144 4.144 7 C -0.165 4.165 8 C 0.059 3.941 9 H 0.108 0.892 10 N -0.345 5.345 11 C 0.311 3.689 12 C -0.567 4.567 13 H 0.132 0.868 14 C -0.187 4.187 15 N -0.398 5.398 16 Si 0.904 3.096 17 H -0.169 1.169 18 H -0.220 1.220 19 H -0.182 1.182 20 C -0.357 4.357 21 C 0.005 3.995 22 N -0.236 5.236 23 C 0.026 3.974 24 N -0.235 5.235 25 C -0.158 4.158 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.361 -3.938 6.764 18.137 hybrid contribution 0.192 -1.839 0.038 1.850 sum -16.169 -5.777 6.803 18.469 Atomic orbital electron populations 1.22968 0.79655 1.03653 1.00897 1.87874 1.21329 1.28378 1.95235 1.22011 0.93729 0.84443 0.95871 0.90682 1.22003 1.01813 0.96933 0.96417 1.21396 0.95415 0.96577 1.01061 1.21894 0.98264 1.01307 0.95036 1.20831 0.84122 0.96437 0.92677 0.89246 1.45285 1.22612 1.10706 1.55884 1.17124 0.85920 0.85344 0.80534 1.20306 1.00720 0.91508 1.44189 0.86772 1.27786 0.92953 1.05799 0.92186 1.70250 1.16311 1.34847 1.18432 0.83413 0.76711 0.71771 0.77677 1.16891 1.22041 1.18159 1.12867 0.99750 0.89563 1.33554 1.25377 0.91669 0.91944 0.90551 1.81035 1.11000 1.14014 1.17517 1.24784 0.91054 0.91365 0.90182 1.80981 1.11481 1.12348 1.18701 1.21789 0.96435 0.96300 1.01296 0.88761 0.92905 0.93287 0.91950 0.90270 0.90622 0.90718 0.92827 0.92612 0.78025 0.89393 0.91221 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.41 -8.72 10.35 -148.98 -1.54 -10.26 16 3 C 0.10 1.94 2.61 30.59 0.08 2.02 16 4 H 0.08 1.32 7.79 -2.39 -0.02 1.30 16 5 C -0.13 -2.42 5.54 30.59 0.17 -2.25 16 6 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 7 C -0.13 -3.29 5.51 30.60 0.17 -3.12 16 8 C 0.16 4.43 2.33 44.99 0.10 4.54 16 9 H 0.09 2.43 6.52 -2.39 -0.02 2.42 16 10 N -0.72 -24.37 5.11 -318.17 -1.63 -25.99 16 11 C 0.43 17.40 5.67 39.03 0.22 17.62 16 12 C -0.53 -21.60 7.25 23.08 0.17 -21.43 16 13 H 0.11 4.20 6.98 -2.91 -0.02 4.18 16 14 C 0.04 1.66 3.89 85.55 0.33 2.00 16 15 N -0.78 -36.89 12.26 21.97 0.27 -36.62 16 16 Si 1.08 39.78 30.00 68.60 2.06 41.84 16 17 H -0.25 -7.89 7.11 99.48 0.71 -7.18 16 18 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 20 C -0.34 -15.46 5.06 -20.07 -0.10 -15.56 16 21 C 0.31 14.30 14.10 88.34 1.25 15.55 16 22 N -0.55 -25.96 18.53 19.00 0.35 -25.60 16 23 C 0.33 16.91 12.08 88.33 1.07 17.97 16 24 N -0.55 -29.33 18.54 19.01 0.35 -28.97 16 25 C -0.12 -2.83 5.04 30.60 0.15 -2.68 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.61 7.87 -2.39 -0.02 0.59 16 28 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 1.17 7.87 -2.38 -0.02 1.15 16 31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 35 H 0.39 13.14 7.47 -92.71 -0.69 12.44 16 36 H 0.29 14.24 7.34 -92.71 -0.68 13.56 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -55.66 326.89 5.36 -50.30 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.48 Total: 21.00 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.02 Total: 14.32 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -0.65 Total: -117.19 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.54 Total: -10.26 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.06 Total: 41.84 kcal Total: -55.66 5.36 -50.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172917964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.594 kcal (2) G-P(sol) polarization free energy of solvation -55.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds