Wall clock time and date at job start Mon Mar 30 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35913 * 116.99658 * 2 1 4 4 C 1.38747 * 120.48119 * 359.97438 * 3 2 1 5 5 N 1.31811 * 120.68782 * 180.02562 * 4 3 2 6 6 C 1.31880 * 121.77862 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.88652 * 0.02562 * 6 5 4 8 8 C 1.38580 * 119.22319 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.80871 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.46833 * 259.99810 * 9 8 7 11 11 C 1.46900 * 110.99702 * 190.00432 * 10 9 8 12 12 C 1.50701 * 109.46937 * 169.54202 * 11 10 9 13 13 H 1.07999 * 120.00094 * 354.95956 * 12 11 10 14 14 C 1.37884 * 119.99844 * 174.96210 * 12 11 10 15 15 N 1.31517 * 120.00125 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99884 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46874 * 90.00037 * 16 14 12 18 18 H 1.48498 * 109.47185 * 210.00046 * 16 14 12 19 19 H 1.48502 * 109.47240 * 330.00209 * 16 14 12 20 20 C 1.46897 * 110.99996 * 66.04897 * 10 9 8 21 21 C 1.52999 * 109.47076 * 63.09526 * 20 10 9 22 22 C 1.47203 * 109.47061 * 180.41231 * 21 20 10 23 23 N 7.53583 * 147.90900 * 303.54648 * 2 1 3 24 24 H 1.09004 * 109.46781 * 299.99591 * 1 2 3 25 25 H 1.08995 * 109.47282 * 59.99404 * 1 2 3 26 26 H 1.08995 * 109.47316 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.65214 * 0.04058 * 4 3 2 28 28 H 1.07994 * 119.55596 * 180.28500 * 6 5 4 29 29 H 1.08001 * 120.38477 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47519 * 19.99740 * 9 8 7 31 31 H 1.08999 * 109.46827 * 140.00293 * 9 8 7 32 32 H 1.09000 * 109.46925 * 289.53636 * 11 10 9 33 33 H 1.09001 * 109.47387 * 49.53877 * 11 10 9 34 34 H 0.96999 * 119.99860 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46765 * 183.08865 * 20 10 9 36 36 H 1.08998 * 109.47256 * 303.09400 * 20 10 9 37 37 H 1.09004 * 109.47165 * 300.40555 * 21 20 10 38 38 H 1.08994 * 109.47785 * 60.40969 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3001 2.3809 -0.0005 5 7 1.8942 3.5575 -0.0010 6 6 3.2080 3.6722 -0.0006 7 6 4.0179 2.5523 0.0000 8 6 3.4344 1.2953 -0.0005 9 6 4.2834 0.0502 0.0006 10 7 4.3621 -0.4900 -1.3633 11 6 4.9779 -1.8237 -1.3664 12 6 4.8111 -2.4507 -2.7267 13 1 4.2294 -1.9482 -3.4852 14 6 5.4013 -3.6659 -3.0026 15 7 6.1101 -4.2776 -2.0790 16 14 5.1940 -4.4434 -4.6885 17 1 6.2903 -3.9891 -5.5812 18 1 5.2404 -5.9222 -4.5607 19 1 3.8866 -4.0370 -5.2637 20 6 5.0882 0.4273 -2.2517 21 6 6.5318 0.5716 -1.7661 22 6 7.2567 1.4985 -2.6507 23 7 7.8134 2.2124 -3.3367 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2214 2.3268 -0.0003 28 1 3.6570 4.6544 0.0037 29 1 5.0930 2.6556 -0.0001 30 1 5.2856 0.2941 0.3531 31 1 3.8369 -0.6934 0.6607 32 1 6.0393 -1.7343 -1.1352 33 1 4.4940 -2.4491 -0.6162 34 1 6.5249 -5.1327 -2.2731 35 1 5.0843 0.0292 -3.2665 36 1 4.6023 1.4029 -2.2422 37 1 6.5356 0.9628 -0.7487 38 1 7.0199 -0.4028 -1.7825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206479968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:57 Heat of formation + Delta-G solvation = 33.164002 kcal Electronic energy + Delta-G solvation = -21160.577990 eV Core-core repulsion = 18004.001977 eV Total energy + Delta-G solvation = -3156.576013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.64298 -38.05691 -37.71426 -35.98327 -33.19962 -32.32653 -30.57964 -30.07511 -27.64275 -27.34500 -25.52390 -23.75598 -22.78813 -21.94407 -19.87040 -17.85063 -17.51489 -16.86387 -16.41624 -15.95486 -15.80656 -15.25195 -14.64111 -14.40686 -14.21129 -13.97775 -13.85044 -13.55265 -13.31608 -12.84783 -12.44813 -12.17826 -11.99103 -11.88364 -11.79409 -11.51994 -11.44378 -11.15962 -11.13454 -10.77995 -10.64605 -10.25893 -9.95704 -9.47853 -9.37236 -9.22979 -8.50118 -8.28595 -7.39665 -6.09687 -4.10819 1.19012 1.38988 3.07288 3.10306 3.28785 3.32983 3.35994 3.39763 3.84572 4.30973 4.39544 4.51585 4.68752 4.82144 4.92842 5.08847 5.15551 5.21089 5.26711 5.38156 5.42818 5.51472 5.52133 5.61800 5.70276 5.78501 6.01459 6.14465 6.25391 6.32534 6.58620 6.62308 7.14344 7.19160 7.36721 7.71539 7.84725 7.97052 8.00688 8.04275 8.41284 8.97038 9.54208 11.00561 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.006062 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.314730 B = 4617.871575 C = 5956.602980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.288 6.288 3 C 0.102 3.898 4 C 0.007 3.993 5 N -0.457 5.457 6 C 0.053 3.947 7 C -0.132 4.132 8 C -0.057 4.057 9 C 0.091 3.909 10 N -0.516 5.516 11 C 0.188 3.812 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.071 3.929 21 C -0.075 4.075 22 C 0.224 3.776 23 N -0.460 5.460 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.005 0.995 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 9.827 7.324 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.199 6.199 3 C 0.053 3.947 4 C -0.151 4.151 5 N -0.167 5.167 6 C -0.104 4.104 7 C -0.152 4.152 8 C -0.066 4.066 9 C -0.037 4.037 10 N -0.238 5.238 11 C 0.063 3.937 12 C -0.546 4.546 13 H 0.082 0.918 14 C -0.143 4.143 15 N -0.537 5.537 16 Si 0.722 3.278 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.060 4.060 21 C -0.117 4.117 22 C -0.094 4.094 23 N -0.138 5.138 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.154 0.846 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.023 0.977 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.468 11.166 6.161 14.779 hybrid contribution 0.849 -1.396 -0.331 1.667 sum -6.619 9.770 5.829 13.162 Atomic orbital electron populations 1.23090 0.78772 1.04318 1.00867 1.86270 1.20744 1.25297 1.87592 1.19892 0.92653 0.85784 0.96370 1.22833 1.00289 0.87336 1.04594 1.67454 1.12289 1.26619 1.10370 1.22503 0.88948 0.98715 1.00251 1.21964 1.01361 0.91922 0.99995 1.19823 0.91182 0.96051 0.99556 1.20972 0.96257 0.92944 0.93507 1.62398 1.52111 1.04025 1.05283 1.19874 0.92811 0.82639 0.98344 1.21113 1.31427 1.04250 0.97818 0.91811 1.24941 0.95222 0.97087 0.97067 1.69936 1.33910 1.16523 1.33286 0.86561 0.78608 0.78396 0.84278 1.20761 1.21279 1.19779 1.22075 0.87302 0.96847 0.99727 1.20259 0.98239 0.97188 0.95970 1.29271 0.92990 0.93342 0.93756 1.81140 1.10593 1.11631 1.10448 0.93016 0.92641 0.87937 0.82921 0.83005 0.84601 0.93946 0.89415 0.97719 0.95012 0.92868 0.88983 0.92010 0.88428 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 101.05 0.99 1.24 16 2 O -0.29 -4.17 9.86 -19.47 -0.19 -4.36 16 3 C 0.10 1.45 6.68 -39.07 -0.26 1.18 16 4 C 0.01 0.09 10.22 -17.37 -0.18 -0.08 16 5 N -0.46 -6.27 10.36 -13.12 -0.14 -6.40 16 6 C 0.05 0.65 11.18 -17.54 -0.20 0.45 16 7 C -0.13 -1.60 8.80 -39.46 -0.35 -1.95 16 8 C -0.06 -0.80 4.61 -104.18 -0.48 -1.28 16 9 C 0.09 1.39 4.64 -4.97 -0.02 1.37 16 10 N -0.52 -9.49 4.69 -237.52 -1.11 -10.61 16 11 C 0.19 4.23 4.50 -4.98 -0.02 4.21 16 12 C -0.51 -12.98 8.41 -34.44 -0.29 -13.27 16 13 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -24.85 13.29 55.43 0.74 -24.11 16 16 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.07 1.18 4.88 -3.83 -0.02 1.16 16 21 C -0.07 -1.09 5.04 -29.52 -0.15 -1.24 16 22 C 0.22 3.56 15.43 -20.76 -0.32 3.24 16 23 N -0.46 -8.25 18.54 42.15 0.78 -7.47 16 24 H 0.05 0.40 7.68 -51.93 -0.40 0.00 16 25 H 0.05 0.49 7.68 -51.93 -0.40 0.10 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.15 1.60 6.32 -52.48 -0.33 1.26 16 28 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.14 1.35 7.86 -52.49 -0.41 0.94 16 30 H 0.04 0.57 5.99 -51.93 -0.31 0.26 16 31 H 0.09 1.42 7.71 -51.93 -0.40 1.02 16 32 H 0.01 0.12 6.01 -51.93 -0.31 -0.19 16 33 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.09 1.73 6.97 -51.93 -0.36 1.37 16 36 H 0.06 0.95 6.49 -51.93 -0.34 0.62 16 37 H 0.10 1.16 6.13 -51.93 -0.32 0.84 16 38 H 0.12 2.03 6.31 -51.93 -0.33 1.71 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -30.36 322.17 -6.17 -36.53 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.69 Total: -0.65 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.39 Total: -3.52 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.27 Total: -48.60 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.19 Total: -4.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.36 -6.17 -36.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206479968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.692 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds