Wall clock time and date at job start Mon Mar 30 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36219 * 116.99861 * 2 1 4 4 C 1.40642 * 126.15843 * 0.02841 * 3 2 1 5 5 C 1.36524 * 107.41087 * 179.97438 * 4 3 2 6 6 C 1.47291 * 126.03461 * 179.97438 * 5 4 3 7 7 C 1.36492 * 126.08758 * 180.31732 * 6 5 4 8 8 C 1.40418 * 107.34685 * 180.17751 * 7 6 5 9 9 C 1.35052 * 107.73850 * 359.57310 * 8 7 6 10 10 N 1.36498 * 108.51833 * 0.25908 * 9 8 7 11 11 H 0.96997 * 125.71392 * 180.02562 * 10 9 8 12 12 N 1.37208 * 107.93071 * 0.26245 * 5 4 3 13 13 H 0.96999 * 125.71676 * 179.74066 * 12 5 4 14 14 C 1.35343 * 126.15678 * 180.02562 * 3 2 1 15 15 C 1.50693 * 125.79736 * 0.02562 * 14 3 2 16 16 N 1.46498 * 109.47048 * 80.00374 * 15 14 3 17 17 C 1.46501 * 120.00202 * 270.00162 * 16 15 14 18 18 C 1.36942 * 120.00358 * 90.00013 * 16 15 14 19 19 H 1.08006 * 119.99239 * 20.37085 * 18 16 15 20 20 C 1.38809 * 120.00322 * 200.37414 * 18 16 15 21 21 N 1.31622 * 120.00188 * 14.98270 * 20 18 16 22 22 Si 1.86800 * 120.00013 * 194.97915 * 20 18 16 23 23 H 1.48504 * 109.46693 * 85.00632 * 22 20 18 24 24 H 1.48500 * 109.47403 * 205.00211 * 22 20 18 25 25 H 1.48496 * 109.47364 * 325.00889 * 22 20 18 26 26 H 1.08992 * 109.47393 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47042 * 299.99883 * 1 2 3 28 28 H 1.08996 * 109.47242 * 59.99508 * 1 2 3 29 29 H 1.07994 * 126.29799 * 359.95732 * 4 3 2 30 30 H 1.08000 * 126.32497 * 0.04969 * 7 6 5 31 31 H 1.07997 * 126.13199 * 179.83517 * 8 7 6 32 32 H 1.07999 * 125.74336 * 180.28552 * 9 8 7 33 33 H 1.09001 * 109.47512 * 200.00334 * 15 14 3 34 34 H 1.09000 * 109.47252 * 320.00816 * 15 14 3 35 35 H 1.09001 * 109.47293 * 95.09465 * 17 16 15 36 36 H 1.09004 * 109.47176 * 215.09770 * 17 16 15 37 37 H 1.08994 * 109.47233 * 335.09494 * 17 16 15 38 38 H 0.96994 * 120.00055 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.4123 2.4686 0.0006 5 6 2.3902 3.4213 0.0009 6 6 2.1796 4.8791 0.0010 7 6 3.1563 5.8325 -0.0047 8 6 2.5198 7.0841 0.0019 9 6 1.1867 6.8677 0.0018 10 7 0.9661 5.5207 0.0012 11 1 0.0974 5.0891 0.0007 12 7 3.6037 2.7811 -0.0054 13 1 4.4720 3.2134 -0.0102 14 6 3.3835 1.4291 -0.0005 15 6 4.4483 0.3628 -0.0017 16 7 4.6230 -0.1513 -1.3623 17 6 3.8263 -1.2913 -1.8226 18 6 5.5310 0.4337 -2.2041 19 1 6.3343 1.0320 -1.8000 20 6 5.4190 0.2578 -3.5764 21 7 4.3013 -0.2093 -4.0910 22 14 6.8546 0.6843 -4.6929 23 1 7.7859 -0.4703 -4.7645 24 1 6.3479 0.9965 -6.0534 25 1 7.5714 1.8653 -4.1485 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.3470 2.6460 0.0004 30 1 4.2219 5.6567 -0.0109 31 1 3.0085 8.0471 0.0023 32 1 0.4235 7.6319 0.0018 33 1 5.3886 0.7877 0.3497 34 1 4.1482 -0.4511 0.6584 35 1 2.9459 -0.9287 -2.3534 36 1 4.4264 -1.9072 -2.4925 37 1 3.5137 -1.8863 -0.9646 38 1 4.2229 -0.3319 -5.0500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237883480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:21 Heat of formation + Delta-G solvation = 81.292285 kcal Electronic energy + Delta-G solvation = -21215.784793 eV Core-core repulsion = 18061.295779 eV Total energy + Delta-G solvation = -3154.489014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15971 -40.13776 -37.20840 -35.37912 -31.65923 -31.03161 -30.12845 -29.66344 -27.88065 -26.64578 -25.72755 -24.47138 -21.64019 -20.93116 -20.28381 -19.88418 -19.51144 -18.09306 -16.57697 -15.98926 -15.20271 -15.13863 -14.76774 -14.30119 -14.21341 -13.75242 -13.58562 -13.32755 -13.24414 -13.03051 -12.64517 -12.25581 -12.15477 -11.81366 -11.52201 -11.12809 -10.83938 -10.71604 -10.62825 -10.54079 -10.21403 -9.96150 -9.83966 -8.83630 -8.67301 -8.50094 -7.75841 -6.84597 -6.55675 -5.67570 -3.11276 1.79349 2.85680 3.11229 3.34682 3.41156 3.46858 3.47453 3.71482 3.79641 4.33441 4.54754 5.05655 5.19177 5.46123 5.48741 5.53254 5.60384 5.62636 5.70134 5.82189 5.86091 5.99666 6.04483 6.22271 6.27137 6.49986 6.54439 6.61326 6.97215 6.97611 7.11584 7.15461 7.50415 7.59233 7.66351 7.80716 7.95061 8.11604 8.29764 8.42629 9.27379 9.91138 10.40736 11.36105 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.006098 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.186769 B = 4590.576531 C = 5855.653342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.299 6.299 3 C 0.032 3.968 4 C -0.241 4.241 5 C 0.073 3.927 6 C 0.103 3.897 7 C -0.200 4.200 8 C -0.194 4.194 9 C -0.019 4.019 10 N -0.550 5.550 11 H 0.414 0.586 12 N -0.523 5.523 13 H 0.417 0.583 14 C 0.025 3.975 15 C 0.214 3.786 16 N -0.586 5.586 17 C 0.170 3.830 18 C -0.257 4.257 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.281 1.281 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.164 0.836 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 8.457 10.034 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C -0.017 4.017 4 C -0.268 4.268 5 C -0.041 4.041 6 C -0.010 4.010 7 C -0.225 4.225 8 C -0.219 4.219 9 C -0.149 4.149 10 N -0.146 5.146 11 H 0.250 0.750 12 N -0.121 5.121 13 H 0.255 0.745 14 C -0.092 4.092 15 C 0.085 3.915 16 N -0.307 5.307 17 C 0.025 3.975 18 C -0.387 4.387 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.181 0.819 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.721 8.164 9.824 14.926 hybrid contribution 0.166 0.682 -1.018 1.237 sum -7.554 8.846 8.806 14.590 Atomic orbital electron populations 1.22736 0.80294 1.02394 0.99953 1.86030 1.19251 1.24859 1.91057 1.17436 0.91141 0.83853 1.09290 1.20659 0.97365 0.91748 1.17035 1.17175 0.85734 0.88166 1.13043 1.17722 0.85174 0.89245 1.08864 1.20853 0.98053 0.91933 1.11689 1.20742 0.92957 0.97875 1.10333 1.21806 0.97885 0.83916 1.11337 1.41885 1.07446 1.06282 1.58939 0.74955 1.41639 1.06802 1.05463 1.58178 0.74518 1.21506 0.95224 0.83456 1.08973 1.19477 0.92260 0.90904 0.88870 1.44167 1.44198 1.32551 1.09736 1.20750 0.95169 0.87427 0.94126 1.19186 1.03051 1.29059 0.87382 0.91452 1.24999 0.96644 1.00908 0.96939 1.70119 1.23571 1.49601 1.11035 0.86311 0.82104 0.78114 0.80206 1.21385 1.21833 1.20648 0.89411 0.94270 0.93888 0.85733 0.84959 0.84765 0.81903 0.93249 0.91657 0.95093 0.94241 0.97974 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.18 101.05 1.03 1.64 16 2 O -0.30 -5.89 10.53 -20.44 -0.22 -6.10 16 3 C 0.03 0.65 6.91 -39.71 -0.27 0.37 16 4 C -0.24 -4.33 9.84 -39.29 -0.39 -4.71 16 5 C 0.07 1.30 7.02 -82.40 -0.58 0.72 16 6 C 0.10 1.61 7.02 -82.39 -0.58 1.03 16 7 C -0.20 -2.96 10.79 -39.39 -0.43 -3.39 16 8 C -0.19 -2.47 10.83 -39.89 -0.43 -2.90 16 9 C -0.02 -0.21 11.93 -16.61 -0.20 -0.41 16 10 N -0.55 -6.86 6.11 -9.49 -0.06 -6.92 16 11 H 0.41 4.13 8.96 -40.82 -0.37 3.77 16 12 N -0.52 -9.65 6.12 -5.65 -0.03 -9.68 16 13 H 0.42 6.82 8.96 -40.82 -0.37 6.45 16 14 C 0.03 0.53 6.77 -81.33 -0.55 -0.03 16 15 C 0.21 4.55 6.20 -5.20 -0.03 4.52 16 16 N -0.59 -15.04 2.91 -182.50 -0.53 -15.57 16 17 C 0.17 4.38 9.02 59.85 0.54 4.92 16 18 C -0.26 -7.09 9.68 -15.06 -0.15 -7.23 16 19 H 0.07 1.79 7.86 -52.48 -0.41 1.38 16 20 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 21 N -0.90 -26.90 10.67 55.49 0.59 -26.30 16 22 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.12 1.89 7.74 -52.49 -0.41 1.48 16 30 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 34 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 35 H 0.03 0.88 7.40 -51.93 -0.38 0.50 16 36 H 0.04 1.08 7.21 -51.93 -0.37 0.70 16 37 H 0.00 0.04 7.83 -51.93 -0.41 -0.37 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -33.61 327.18 -7.67 -41.28 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.21 Total: 6.65 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.12 Total: -5.42 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.03 Total: -58.48 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.22 Total: -6.10 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.61 -7.67 -41.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237883480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.572 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds