Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36219 * 116.99861 * 2 1 4 4 C 1.40642 * 126.15843 * 0.02841 * 3 2 1 5 5 C 1.36524 * 107.41087 * 179.97438 * 4 3 2 6 6 C 1.47291 * 126.03461 * 179.97438 * 5 4 3 7 7 C 1.36492 * 126.08758 * 180.31732 * 6 5 4 8 8 C 1.40418 * 107.34685 * 180.17751 * 7 6 5 9 9 C 1.35052 * 107.73850 * 359.57310 * 8 7 6 10 10 N 1.36498 * 108.51833 * 0.25908 * 9 8 7 11 11 H 0.96997 * 125.71392 * 180.02562 * 10 9 8 12 12 N 1.37208 * 107.93071 * 0.26245 * 5 4 3 13 13 H 0.96999 * 125.71676 * 179.74066 * 12 5 4 14 14 C 1.35343 * 126.15678 * 180.02562 * 3 2 1 15 15 C 1.50693 * 125.79736 * 0.02562 * 14 3 2 16 16 N 1.46498 * 109.47048 * 80.00374 * 15 14 3 17 17 C 1.46501 * 120.00202 * 270.00162 * 16 15 14 18 18 C 1.36942 * 120.00358 * 90.00013 * 16 15 14 19 19 H 1.08006 * 119.99239 * 20.37085 * 18 16 15 20 20 C 1.38809 * 120.00322 * 200.37414 * 18 16 15 21 21 N 1.31622 * 120.00188 * 14.98270 * 20 18 16 22 22 Si 1.86800 * 120.00013 * 194.97915 * 20 18 16 23 23 H 1.48504 * 109.46693 * 85.00632 * 22 20 18 24 24 H 1.48500 * 109.47403 * 205.00211 * 22 20 18 25 25 H 1.48496 * 109.47364 * 325.00889 * 22 20 18 26 26 H 1.08992 * 109.47393 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47042 * 299.99883 * 1 2 3 28 28 H 1.08996 * 109.47242 * 59.99508 * 1 2 3 29 29 H 1.07994 * 126.29799 * 359.95732 * 4 3 2 30 30 H 1.08000 * 126.32497 * 0.04969 * 7 6 5 31 31 H 1.07997 * 126.13199 * 179.83517 * 8 7 6 32 32 H 1.07999 * 125.74336 * 180.28552 * 9 8 7 33 33 H 1.09001 * 109.47512 * 200.00334 * 15 14 3 34 34 H 1.09000 * 109.47252 * 320.00816 * 15 14 3 35 35 H 1.09001 * 109.47293 * 95.09465 * 17 16 15 36 36 H 1.09004 * 109.47176 * 215.09770 * 17 16 15 37 37 H 1.08994 * 109.47233 * 335.09494 * 17 16 15 38 38 H 0.96994 * 120.00055 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.4123 2.4686 0.0006 5 6 2.3902 3.4213 0.0009 6 6 2.1796 4.8791 0.0010 7 6 3.1563 5.8325 -0.0047 8 6 2.5198 7.0841 0.0019 9 6 1.1867 6.8677 0.0018 10 7 0.9661 5.5207 0.0012 11 1 0.0974 5.0891 0.0007 12 7 3.6037 2.7811 -0.0054 13 1 4.4720 3.2134 -0.0102 14 6 3.3835 1.4291 -0.0005 15 6 4.4483 0.3628 -0.0017 16 7 4.6230 -0.1513 -1.3623 17 6 3.8263 -1.2913 -1.8226 18 6 5.5310 0.4337 -2.2041 19 1 6.3343 1.0320 -1.8000 20 6 5.4190 0.2578 -3.5764 21 7 4.3013 -0.2093 -4.0910 22 14 6.8546 0.6843 -4.6929 23 1 7.7859 -0.4703 -4.7645 24 1 6.3479 0.9965 -6.0534 25 1 7.5714 1.8653 -4.1485 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.3470 2.6460 0.0004 30 1 4.2219 5.6567 -0.0109 31 1 3.0085 8.0471 0.0023 32 1 0.4235 7.6319 0.0018 33 1 5.3886 0.7877 0.3497 34 1 4.1482 -0.4511 0.6584 35 1 2.9459 -0.9287 -2.3534 36 1 4.4264 -1.9072 -2.4925 37 1 3.5137 -1.8863 -0.9646 38 1 4.2229 -0.3319 -5.0500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237883480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = 59.268175 kcal Electronic energy + Delta-G solvation = -21216.739830 eV Core-core repulsion = 18061.295779 eV Total energy + Delta-G solvation = -3155.444051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.38158 -41.34977 -38.60331 -37.33263 -33.56210 -32.13208 -31.58030 -31.00300 -29.26315 -28.10707 -27.73671 -25.95079 -23.36724 -22.26016 -21.59941 -21.06703 -20.74836 -19.39099 -18.60259 -17.29493 -16.83907 -16.56731 -16.45970 -15.65811 -15.45419 -15.29557 -15.09882 -14.94245 -14.57757 -14.13617 -14.11985 -13.86376 -13.40123 -13.16475 -12.95187 -12.80133 -12.76546 -12.51303 -12.21270 -12.02943 -11.99473 -11.97209 -11.78974 -10.62694 -9.95157 -9.80045 -9.08903 -8.84513 -8.00321 -7.79506 -5.26108 0.58295 1.45223 1.46938 1.54553 1.74975 1.96273 2.03747 2.42971 2.53039 2.58817 3.05380 3.34638 3.83498 3.89683 4.28977 4.39019 4.43252 4.46652 4.50063 4.51081 4.57410 4.65516 4.78603 4.91528 4.93856 4.99850 5.04996 5.31456 5.34949 5.37932 5.64437 5.68282 5.79641 5.91902 6.08536 6.25854 6.32087 6.69291 6.76753 6.89522 7.15844 7.87934 8.33997 9.23214 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.006098 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.186769 B = 4590.576531 C = 5855.653342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.326 6.326 3 C 0.023 3.977 4 C -0.257 4.257 5 C 0.090 3.910 6 C 0.062 3.938 7 C -0.206 4.206 8 C -0.217 4.217 9 C 0.008 3.992 10 N -0.543 5.543 11 H 0.425 0.575 12 N -0.525 5.525 13 H 0.423 0.577 14 C -0.013 4.013 15 C 0.216 3.784 16 N -0.602 5.602 17 C 0.192 3.808 18 C -0.258 4.258 19 H 0.076 0.924 20 C -0.054 4.054 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.283 1.283 24 H -0.300 1.300 25 H -0.268 1.268 26 H 0.109 0.891 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.207 0.793 33 H 0.063 0.937 34 H 0.074 0.926 35 H -0.003 1.003 36 H 0.014 0.986 37 H 0.025 0.975 38 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 10.726 10.968 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.240 6.240 3 C -0.027 4.027 4 C -0.284 4.284 5 C -0.026 4.026 6 C -0.051 4.051 7 C -0.232 4.232 8 C -0.241 4.241 9 C -0.124 4.124 10 N -0.139 5.139 11 H 0.264 0.736 12 N -0.123 5.123 13 H 0.261 0.739 14 C -0.129 4.129 15 C 0.089 3.911 16 N -0.323 5.323 17 C 0.047 3.953 18 C -0.388 4.388 19 H 0.093 0.907 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.210 1.210 24 H -0.227 1.227 25 H -0.193 1.193 26 H 0.127 0.873 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.167 0.833 30 H 0.150 0.850 31 H 0.173 0.827 32 H 0.224 0.776 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.015 0.985 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.427 10.428 10.807 17.221 hybrid contribution 0.281 0.139 -1.165 1.207 sum -8.145 10.568 9.642 16.462 Atomic orbital electron populations 1.23009 0.77889 1.04210 1.00804 1.85975 1.21895 1.25071 1.91032 1.17773 0.91511 0.84839 1.08576 1.20917 0.98739 0.90831 1.17895 1.17581 0.85211 0.89482 1.10291 1.17622 0.86827 0.88231 1.12386 1.21155 0.98310 0.93048 1.10672 1.21095 0.93752 0.97957 1.11293 1.22563 0.98531 0.83904 1.07423 1.41968 1.07161 1.06750 1.58052 0.73594 1.41583 1.07535 1.04920 1.58309 0.73861 1.21135 0.95272 0.84227 1.12256 1.19475 0.93320 0.91648 0.86631 1.44324 1.44200 1.32960 1.10850 1.20377 0.93355 0.87494 0.94086 1.19550 1.03459 1.27950 0.87839 0.90664 1.25763 0.98937 1.01819 0.98427 1.70304 1.25525 1.51812 1.10656 0.85294 0.79199 0.78226 0.77791 1.21000 1.22697 1.19262 0.87252 0.92107 0.94178 0.83286 0.85002 0.82712 0.77601 0.91848 0.90790 0.98459 0.96731 0.95624 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 10.18 113.37 1.15 2.16 16 2 O -0.33 -12.86 10.53 -96.05 -1.01 -13.87 16 3 C 0.02 0.93 6.91 22.19 0.15 1.08 16 4 C -0.26 -9.05 9.84 22.46 0.22 -8.83 16 5 C 0.09 3.12 7.02 40.28 0.28 3.40 16 6 C 0.06 1.84 7.02 40.27 0.28 2.12 16 7 C -0.21 -5.75 10.79 22.39 0.24 -5.51 16 8 C -0.22 -4.83 10.83 22.07 0.24 -4.59 16 9 C 0.01 0.14 11.93 83.23 0.99 1.14 16 10 N -0.54 -11.94 6.11 -183.93 -1.12 -13.07 16 11 H 0.43 7.18 8.96 -92.71 -0.83 6.35 16 12 N -0.52 -19.36 6.12 -171.77 -1.05 -20.41 16 13 H 0.42 13.89 8.96 -92.71 -0.83 13.06 16 14 C -0.01 -0.56 6.77 41.08 0.28 -0.28 16 15 C 0.22 9.26 6.20 85.63 0.53 9.79 16 16 N -0.60 -31.35 2.91 -731.32 -2.13 -33.48 16 17 C 0.19 10.20 9.02 127.77 1.15 11.35 16 18 C -0.26 -14.34 9.68 84.03 0.81 -13.52 16 19 H 0.08 3.97 7.86 -2.91 -0.02 3.95 16 20 C -0.05 -3.13 5.06 84.86 0.43 -2.70 16 21 N -0.94 -57.75 10.67 21.65 0.23 -57.51 16 22 Si 0.97 46.17 29.58 68.60 2.03 48.20 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 28 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.15 4.27 7.74 -2.91 -0.02 4.25 16 30 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.06 2.47 8.03 -2.39 -0.02 2.45 16 34 H 0.07 2.96 7.86 -2.39 -0.02 2.95 16 35 H 0.00 -0.18 7.40 -2.39 -0.02 -0.19 16 36 H 0.01 0.80 7.21 -2.39 -0.02 0.78 16 37 H 0.03 1.20 7.83 -2.39 -0.02 1.18 16 38 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -73.62 327.18 3.14 -70.48 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.58 Total: 24.05 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 6.77 Total: -4.39 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -4.07 Total: -124.47 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.01 Total: -13.87 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -73.62 3.14 -70.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237883480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.749 kcal (2) G-P(sol) polarization free energy of solvation -73.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds