Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.38391 * 2 1 4 4 C 1.50257 * 109.38632 * 240.30611 * 2 1 3 5 5 O 1.21281 * 118.62481 * 42.64496 * 4 2 1 6 6 N 1.33717 * 122.74721 * 222.61776 * 4 2 1 7 7 C 1.46502 * 118.53194 * 181.73306 * 6 4 2 8 8 C 1.46003 * 122.92821 * 1.71670 * 6 4 2 9 9 C 1.52968 * 110.04596 * 341.83073 * 8 6 4 10 10 N 1.46901 * 109.38669 * 119.78978 * 2 1 3 11 11 C 1.38830 * 110.99959 * 293.82437 * 10 2 1 12 12 C 1.39795 * 119.58728 * 179.97438 * 11 10 2 13 13 C 1.38588 * 119.49266 * 180.02562 * 12 11 10 14 14 C 1.38395 * 118.68193 * 0.02562 * 13 12 11 15 15 C 1.40553 * 119.14557 * 359.97438 * 14 13 12 16 16 C 1.41312 * 119.78224 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00320 * 0.02562 * 16 15 14 18 18 C 1.40030 * 120.00012 * 180.02562 * 16 15 14 19 19 N 1.30738 * 120.00095 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99783 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47479 * 90.00050 * 20 18 16 22 22 H 1.48503 * 109.46907 * 209.99720 * 20 18 16 23 23 H 1.48502 * 109.47393 * 329.99609 * 20 18 16 24 24 N 1.31955 * 119.58087 * 0.02562 * 11 10 2 25 25 H 1.09000 * 109.47435 * 300.21174 * 1 2 3 26 26 H 1.09005 * 109.47116 * 60.21078 * 1 2 3 27 27 H 1.08996 * 109.47036 * 180.20841 * 1 2 3 28 28 H 1.09002 * 109.47216 * 0.02562 * 7 6 4 29 29 H 1.08994 * 109.47043 * 120.00772 * 7 6 4 30 30 H 1.09002 * 109.47156 * 240.00751 * 7 6 4 31 31 H 1.09002 * 109.37691 * 102.01362 * 8 6 4 32 32 H 1.09003 * 109.37198 * 221.65792 * 8 6 4 33 33 H 1.08998 * 109.57485 * 290.51052 * 9 8 6 34 34 H 1.08998 * 109.59772 * 170.06760 * 9 8 6 35 35 H 1.08003 * 120.25274 * 0.02562 * 12 11 10 36 36 H 1.08005 * 120.66233 * 179.97438 * 13 12 11 37 37 H 1.08000 * 120.42574 * 179.72632 * 14 13 12 38 38 H 0.96999 * 120.00157 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0287 -0.7021 -1.2313 5 8 1.4829 -0.4759 -2.2904 6 7 3.0495 -1.5655 -1.2081 7 6 3.4847 -2.1686 -2.4703 8 6 3.7499 -1.9337 0.0189 9 6 3.4712 -0.9005 1.1119 10 7 2.0176 -0.6885 1.2026 11 6 1.6889 0.0210 2.3498 12 6 2.0677 -0.4752 3.6005 13 6 1.7381 0.2343 4.7445 14 6 1.0383 1.4209 4.6115 15 6 0.6859 1.8675 3.3263 16 6 -0.0291 3.0769 3.1750 17 1 -0.3027 3.6551 4.0452 18 6 -0.3830 3.5258 1.8967 19 7 -0.0524 2.8258 0.8432 20 14 -1.3276 5.1250 1.6967 21 1 -0.3701 6.2513 1.5559 22 1 -2.1817 5.0470 0.4843 23 1 -2.1821 5.3479 2.8906 24 7 1.0219 1.1548 2.2458 25 1 -0.3634 0.5171 0.8881 26 1 -0.3633 0.5106 -0.8919 27 1 -0.3633 -1.0276 0.0037 28 1 2.8659 -1.7926 -3.2851 29 1 4.5269 -1.9095 -2.6565 30 1 3.3852 -3.2524 -2.4085 31 1 3.4066 -2.9134 0.3513 32 1 4.8218 -1.9748 -0.1750 33 1 3.9627 0.0392 0.8601 34 1 3.8474 -1.2678 2.0667 35 1 2.6131 -1.4045 3.6748 36 1 2.0210 -0.1318 5.7204 37 1 0.7631 1.9943 5.4844 38 1 -0.2972 3.1369 -0.0423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320455705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = 31.369150 kcal Electronic energy + Delta-G solvation = -22147.896079 eV Core-core repulsion = 18991.242236 eV Total energy + Delta-G solvation = -3156.653844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.40539 -38.56970 -36.42190 -35.14254 -33.60193 -31.08658 -30.29634 -29.99618 -27.84381 -26.55376 -25.43348 -23.33291 -22.54053 -21.26198 -20.41495 -18.19654 -17.70412 -16.73548 -16.27931 -15.57933 -15.30408 -14.79346 -14.61868 -14.35849 -14.12384 -13.53570 -13.15259 -13.01895 -12.66229 -12.44275 -12.15520 -11.98302 -11.89686 -11.49419 -11.22614 -11.09999 -10.90760 -10.77486 -10.73067 -10.56121 -10.48420 -10.06163 -9.53352 -9.32102 -8.75861 -8.51475 -8.12624 -7.61915 -7.07728 -6.49132 -4.58572 2.63848 2.91642 3.03656 3.08435 3.10425 3.16520 3.27603 3.91250 4.23233 4.68730 4.86361 4.97981 5.33521 5.34211 5.48318 5.57431 5.70788 5.82817 5.92102 5.94266 6.04405 6.18073 6.25707 6.34597 6.50970 6.58089 6.71612 6.82241 6.92349 6.98194 7.09446 7.26860 7.49926 7.64928 7.69505 7.70744 7.80016 8.08741 8.24964 8.53044 8.63989 8.89619 9.96203 10.22958 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.007192 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.698737 B = 3892.146262 C = 5155.813493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.095 3.905 3 H 0.102 0.898 4 C 0.521 3.479 5 O -0.552 6.552 6 N -0.616 5.616 7 C 0.074 3.926 8 C 0.123 3.877 9 C 0.043 3.957 10 N -0.473 5.473 11 C 0.319 3.681 12 C -0.319 4.319 13 C -0.044 4.044 14 C -0.291 4.291 15 C 0.273 3.727 16 C -0.427 4.427 17 H 0.084 0.916 18 C 0.071 3.929 19 N -0.713 5.713 20 Si 0.906 3.094 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.262 1.262 24 N -0.507 5.507 25 H 0.120 0.880 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -5.998 -1.928 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.015 4.015 3 H 0.119 0.881 4 C 0.311 3.689 5 O -0.429 6.429 6 N -0.350 5.350 7 C -0.069 4.069 8 C -0.001 4.001 9 C -0.085 4.085 10 N -0.194 5.194 11 C 0.081 3.919 12 C -0.344 4.344 13 C -0.068 4.068 14 C -0.314 4.314 15 C 0.147 3.853 16 C -0.459 4.459 17 H 0.102 0.898 18 C -0.154 4.154 19 N -0.334 5.334 20 Si 0.730 3.270 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.186 1.186 24 N -0.225 5.225 25 H 0.138 0.862 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.748 -6.026 -3.538 9.048 hybrid contribution 0.349 0.876 0.747 1.203 sum 6.097 -5.150 -2.792 8.455 Atomic orbital electron populations 1.21739 0.90361 0.99675 1.05661 1.21499 0.99352 0.96815 0.83823 0.88062 1.20846 0.78409 0.78090 0.91588 1.90624 1.56764 1.63881 1.31639 1.47438 1.34254 1.44902 1.08409 1.21661 0.99911 0.97702 0.87627 1.21493 0.96241 0.98805 0.83532 1.22517 0.88072 0.98294 0.99604 1.59785 1.11624 1.46136 1.01860 1.19710 0.94082 0.89917 0.88147 1.20626 1.17554 1.04181 0.92068 1.20701 0.95553 0.94256 0.96310 1.21654 1.11470 1.00336 0.97951 1.18322 0.89103 0.91741 0.86087 1.19600 1.29099 1.03839 0.93326 0.89822 1.26036 0.95288 0.98250 0.95845 1.70063 1.30769 1.33670 0.98900 0.86346 0.79930 0.81775 0.78906 1.19549 1.20057 1.18646 1.68628 1.17929 1.04384 1.31532 0.86217 0.92789 0.95527 0.89387 0.92714 0.92628 0.91094 0.90593 0.93478 0.88077 0.88573 0.88503 0.88410 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 7.89 37.16 0.29 -2.34 16 2 C 0.10 2.02 2.12 -69.08 -0.15 1.88 16 3 H 0.10 2.42 7.67 -51.93 -0.40 2.02 16 4 C 0.52 10.33 7.13 -11.67 -0.08 10.25 16 5 O -0.55 -12.24 15.30 5.56 0.09 -12.16 16 6 N -0.62 -9.70 3.23 -182.48 -0.59 -10.28 16 7 C 0.07 0.93 10.55 59.85 0.63 1.56 16 8 C 0.12 1.59 6.64 -4.33 -0.03 1.56 16 9 C 0.04 0.67 5.44 -3.69 -0.02 0.65 16 10 N -0.47 -9.47 4.51 -166.96 -0.75 -10.22 16 11 C 0.32 7.27 6.01 -155.32 -0.93 6.33 16 12 C -0.32 -6.80 9.13 -38.87 -0.35 -7.15 16 13 C -0.04 -0.93 10.15 -39.39 -0.40 -1.33 16 14 C -0.29 -6.83 9.83 -38.65 -0.38 -7.21 16 15 C 0.27 7.04 6.55 -85.00 -0.56 6.49 16 16 C -0.43 -10.80 9.14 -37.74 -0.34 -11.15 16 17 H 0.08 2.00 7.85 -52.48 -0.41 1.59 16 18 C 0.07 1.71 5.50 -17.35 -0.10 1.62 16 19 N -0.71 -17.54 9.41 55.55 0.52 -17.02 16 20 Si 0.91 18.06 29.56 -169.99 -5.02 13.03 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 N -0.51 -12.78 4.26 -10.33 -0.04 -12.83 16 25 H 0.12 3.01 4.62 -51.93 -0.24 2.77 16 26 H 0.05 1.22 7.81 -51.93 -0.41 0.81 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.26 6.67 -51.93 -0.35 0.92 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.10 1.44 6.57 -51.93 -0.34 1.10 16 35 H 0.10 1.81 7.24 -52.48 -0.38 1.43 16 36 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -28.62 305.27 -8.66 -37.27 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.04 Total: 6.45 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.42 Total: 1.15 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.86 Total: -50.35 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.62 -8.66 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320455705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.642 kcal (2) G-P(sol) polarization free energy of solvation -28.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds