Wall clock time and date at job start Mon Mar 30 2020 01:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.90314 * 2 1 4 4 N 1.47897 * 109.91884 * 121.10857 * 2 1 3 5 5 C 1.48535 * 105.81951 * 144.88402 * 4 2 1 6 6 C 1.54937 * 103.22492 * 320.78895 * 5 4 2 7 7 C 1.53996 * 109.91627 * 238.90267 * 2 1 3 8 8 H 1.09004 * 110.30606 * 120.30651 * 7 2 1 9 9 C 1.50702 * 110.30916 * 358.13889 * 7 2 1 10 10 O 1.21272 * 120.00055 * 274.29109 * 9 7 2 11 11 N 1.34778 * 120.00025 * 94.29316 * 9 7 2 12 12 C 1.39264 * 119.99836 * 185.24479 * 11 9 7 13 13 C 1.39674 * 119.57485 * 174.32061 * 12 11 9 14 14 C 1.38652 * 119.49743 * 180.02562 * 13 12 11 15 15 C 1.38343 * 118.67042 * 359.97438 * 14 13 12 16 16 C 1.40576 * 119.12772 * 0.02562 * 15 14 13 17 17 C 1.41338 * 119.78674 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00035 * 0.02562 * 17 16 15 19 19 C 1.40034 * 120.00203 * 179.97438 * 17 16 15 20 20 N 1.30743 * 119.99657 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46939 * 90.00597 * 21 19 17 23 23 H 1.48507 * 109.46693 * 210.00489 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00163 * 21 19 17 25 25 N 1.31904 * 119.57500 * 354.04630 * 12 11 9 26 26 H 1.09000 * 109.47149 * 296.52152 * 1 2 3 27 27 H 1.08996 * 109.47023 * 56.52668 * 1 2 3 28 28 H 1.09006 * 109.46714 * 176.52163 * 1 2 3 29 29 H 1.00899 * 110.99708 * 265.39491 * 4 2 1 30 30 H 1.08994 * 110.66786 * 79.22587 * 5 4 2 31 31 H 1.09005 * 110.66070 * 202.18912 * 5 4 2 32 32 H 1.09000 * 110.72242 * 155.77643 * 6 5 4 33 33 H 1.09002 * 110.72527 * 278.87718 * 6 5 4 34 34 H 0.97002 * 120.00177 * 5.25001 * 11 9 7 35 35 H 1.08000 * 120.24970 * 359.97438 * 13 12 11 36 36 H 1.07999 * 120.66594 * 180.02562 * 14 13 12 37 37 H 1.08000 * 120.43756 * 179.97438 * 15 14 13 38 38 H 0.96999 * 119.99747 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 7 2.0339 -0.7184 1.1905 5 6 3.2709 -1.4132 0.7508 6 6 2.9124 -1.9082 -0.6730 7 6 2.0546 -0.7478 -1.2398 8 1 2.6685 -0.0850 -1.8497 9 6 0.9047 -1.2896 -2.0492 10 8 0.4233 -2.3678 -1.7725 11 7 0.4114 -0.5761 -3.0807 12 6 -0.7191 -1.0239 -3.7596 13 6 -1.2931 -0.2207 -4.7477 14 6 -2.4189 -0.6679 -5.4222 15 6 -2.9420 -1.9056 -5.0930 16 6 -2.3185 -2.6669 -4.0891 17 6 -2.8414 -3.9330 -3.7413 18 1 -3.7171 -4.3129 -4.2465 19 6 -2.2236 -4.6954 -2.7423 20 7 -1.1632 -4.2357 -2.1310 21 14 -2.9144 -6.3691 -2.2831 22 1 -2.2804 -7.4145 -3.1260 23 1 -2.6294 -6.6466 -0.8523 24 1 -4.3826 -6.3767 -2.5059 25 7 -1.2308 -2.2034 -3.4650 26 1 -0.3633 0.4589 0.9195 27 1 -0.3633 0.5668 -0.8572 28 1 -0.3633 -1.0259 -0.0624 29 1 2.2282 -0.0768 1.9446 30 1 4.1106 -0.7191 0.7167 31 1 3.4945 -2.2535 1.4081 32 1 3.8131 -2.0500 -1.2702 33 1 2.3331 -2.8303 -0.6263 34 1 0.8438 0.2493 -3.3502 35 1 -0.8638 0.7417 -4.9839 36 1 -2.8779 -0.0625 -6.1898 37 1 -3.8183 -2.2816 -5.6000 38 1 -0.7355 -4.7637 -1.4388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330991856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:38 Heat of formation + Delta-G solvation = 27.027156 kcal Electronic energy + Delta-G solvation = -21885.082797 eV Core-core repulsion = 18728.240671 eV Total energy + Delta-G solvation = -3156.842127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93816 -38.22489 -36.72889 -34.03906 -32.95494 -31.15768 -30.55682 -30.19502 -28.79314 -25.77230 -25.32128 -22.67275 -21.35590 -21.09092 -20.39640 -18.69768 -17.53302 -17.03063 -16.05834 -15.95976 -14.73342 -14.64399 -14.41628 -14.24320 -13.82464 -13.56379 -12.91817 -12.74222 -12.66186 -12.19552 -12.00174 -11.82999 -11.58953 -11.46906 -11.16863 -11.03063 -10.91081 -10.64877 -10.61003 -10.54319 -10.43486 -9.89880 -9.58150 -8.96432 -8.85259 -8.46871 -7.92589 -7.15901 -6.91658 -6.09745 -4.36103 2.81833 3.10824 3.20630 3.22799 3.29953 3.75723 3.88327 4.09984 4.23089 4.78679 4.82492 4.97197 5.14177 5.24270 5.43982 5.53121 5.58270 5.79715 5.89159 5.94590 6.07675 6.15160 6.18526 6.23729 6.46618 6.52344 6.72495 6.74526 6.87703 6.88917 6.92946 7.28136 7.37655 7.59545 7.67290 7.84766 8.11640 8.24684 8.51749 8.78881 9.09103 9.35330 10.28884 10.52188 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.007223 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.024008 B = 3875.451757 C = 5170.108433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.088 3.912 3 H 0.048 0.952 4 N -0.663 5.663 5 C 0.041 3.959 6 C -0.110 4.110 7 C -0.119 4.119 8 H 0.081 0.919 9 C 0.486 3.514 10 O -0.400 6.400 11 N -0.668 5.668 12 C 0.373 3.627 13 C -0.359 4.359 14 C -0.036 4.036 15 C -0.307 4.307 16 C 0.271 3.729 17 C -0.425 4.425 18 H 0.081 0.919 19 C 0.058 3.942 20 N -0.653 5.653 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.264 1.264 25 N -0.472 5.472 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.333 0.667 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.651 7.225 4.551 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 H 0.066 0.934 4 N -0.293 5.293 5 C -0.088 4.088 6 C -0.149 4.149 7 C -0.141 4.141 8 H 0.100 0.900 9 C 0.267 3.733 10 O -0.263 6.263 11 N -0.315 5.315 12 C 0.134 3.866 13 C -0.385 4.385 14 C -0.061 4.061 15 C -0.330 4.330 16 C 0.146 3.854 17 C -0.456 4.456 18 H 0.099 0.901 19 C -0.172 4.172 20 N -0.271 5.271 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.191 5.191 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.404 5.217 5.629 11.381 hybrid contribution 0.267 1.274 -0.771 1.513 sum 8.671 6.491 4.858 11.871 Atomic orbital electron populations 1.21950 0.93264 1.04563 1.00863 1.21979 0.96933 0.94497 0.88834 0.93401 1.62981 1.27899 1.30776 1.07605 1.22996 0.90859 0.98183 0.96763 1.22560 0.98887 0.99227 0.94186 1.22352 0.96756 0.98516 0.96506 0.90041 1.20256 0.85153 0.86620 0.81272 1.91133 1.54657 1.16926 1.63613 1.43523 1.28736 1.26234 1.33038 1.18628 0.86821 0.91717 0.89399 1.20497 1.05961 1.02658 1.09412 1.20547 0.94222 0.94989 0.96305 1.21612 1.05660 0.98243 1.07470 1.18389 0.87232 0.92486 0.87334 1.19572 1.10565 0.99433 1.15981 0.90053 1.26166 0.95227 0.99286 0.96473 1.70308 1.10928 1.33057 1.12816 0.86539 0.80338 0.82931 0.78285 1.19731 1.20282 1.18815 1.68717 1.12831 1.09410 1.28129 0.93099 0.92361 0.89867 0.85135 0.94570 0.90034 0.91283 0.88350 0.77071 0.89244 0.88761 0.88673 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.38 37.16 0.31 -2.15 16 2 C 0.09 1.21 3.89 -66.64 -0.26 0.95 16 3 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 4 N -0.66 -8.72 7.14 -103.13 -0.74 -9.46 16 5 C 0.04 0.49 7.55 -1.90 -0.01 0.47 16 6 C -0.11 -1.57 6.57 -24.64 -0.16 -1.73 16 7 C -0.12 -1.75 3.40 -90.18 -0.31 -2.05 16 8 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 9 C 0.49 9.64 4.73 -10.98 -0.05 9.59 16 10 O -0.40 -9.86 10.60 5.56 0.06 -9.80 16 11 N -0.67 -13.11 5.09 -11.40 -0.06 -13.16 16 12 C 0.37 9.10 7.43 -154.98 -1.15 7.94 16 13 C -0.36 -8.14 9.96 -38.89 -0.39 -8.52 16 14 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 15 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 16 C 0.27 7.66 6.55 -85.00 -0.56 7.10 16 17 C -0.42 -11.79 9.14 -37.73 -0.34 -12.14 16 18 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 19 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 20 N -0.65 -18.12 9.00 55.55 0.50 -17.62 16 21 Si 0.89 19.51 29.56 -169.99 -5.02 14.48 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 25 N -0.47 -13.23 5.74 -10.25 -0.06 -13.29 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.98 7.55 -51.93 -0.39 0.59 16 28 H 0.08 1.76 6.56 -51.93 -0.34 1.41 16 29 H 0.33 3.52 8.92 -39.29 -0.35 3.17 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.74 6.93 -51.93 -0.36 1.38 16 34 H 0.40 6.07 8.70 -40.82 -0.36 5.72 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 38 H 0.27 7.14 8.29 -40.82 -0.34 6.81 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -32.20 309.34 -9.60 -41.81 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.15 Total: 10.92 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -3.80 Total: -8.53 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.35 Total: -53.53 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.20 -9.60 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330991856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.835 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds