Wall clock time and date at job start Mon Mar 30 2020 01:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.90314 * 2 1 4 4 N 1.47897 * 109.91884 * 121.10857 * 2 1 3 5 5 C 1.48535 * 105.81951 * 144.88402 * 4 2 1 6 6 C 1.54937 * 103.22492 * 320.78895 * 5 4 2 7 7 C 1.53996 * 109.91627 * 238.90267 * 2 1 3 8 8 H 1.09004 * 110.30606 * 120.30651 * 7 2 1 9 9 C 1.50702 * 110.30916 * 358.13889 * 7 2 1 10 10 O 1.21272 * 120.00055 * 274.29109 * 9 7 2 11 11 N 1.34778 * 120.00025 * 94.29316 * 9 7 2 12 12 C 1.39264 * 119.99836 * 185.24479 * 11 9 7 13 13 C 1.39674 * 119.57485 * 174.32061 * 12 11 9 14 14 C 1.38652 * 119.49743 * 180.02562 * 13 12 11 15 15 C 1.38343 * 118.67042 * 359.97438 * 14 13 12 16 16 C 1.40576 * 119.12772 * 0.02562 * 15 14 13 17 17 C 1.41338 * 119.78674 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00035 * 0.02562 * 17 16 15 19 19 C 1.40034 * 120.00203 * 179.97438 * 17 16 15 20 20 N 1.30743 * 119.99657 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46939 * 90.00597 * 21 19 17 23 23 H 1.48507 * 109.46693 * 210.00489 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00163 * 21 19 17 25 25 N 1.31904 * 119.57500 * 354.04630 * 12 11 9 26 26 H 1.09000 * 109.47149 * 296.52152 * 1 2 3 27 27 H 1.08996 * 109.47023 * 56.52668 * 1 2 3 28 28 H 1.09006 * 109.46714 * 176.52163 * 1 2 3 29 29 H 1.00899 * 110.99708 * 265.39491 * 4 2 1 30 30 H 1.08994 * 110.66786 * 79.22587 * 5 4 2 31 31 H 1.09005 * 110.66070 * 202.18912 * 5 4 2 32 32 H 1.09000 * 110.72242 * 155.77643 * 6 5 4 33 33 H 1.09002 * 110.72527 * 278.87718 * 6 5 4 34 34 H 0.97002 * 120.00177 * 5.25001 * 11 9 7 35 35 H 1.08000 * 120.24970 * 359.97438 * 13 12 11 36 36 H 1.07999 * 120.66594 * 180.02562 * 14 13 12 37 37 H 1.08000 * 120.43756 * 179.97438 * 15 14 13 38 38 H 0.96999 * 119.99747 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 7 2.0339 -0.7184 1.1905 5 6 3.2709 -1.4132 0.7508 6 6 2.9124 -1.9082 -0.6730 7 6 2.0546 -0.7478 -1.2398 8 1 2.6685 -0.0850 -1.8497 9 6 0.9047 -1.2896 -2.0492 10 8 0.4233 -2.3678 -1.7725 11 7 0.4114 -0.5761 -3.0807 12 6 -0.7191 -1.0239 -3.7596 13 6 -1.2931 -0.2207 -4.7477 14 6 -2.4189 -0.6679 -5.4222 15 6 -2.9420 -1.9056 -5.0930 16 6 -2.3185 -2.6669 -4.0891 17 6 -2.8414 -3.9330 -3.7413 18 1 -3.7171 -4.3129 -4.2465 19 6 -2.2236 -4.6954 -2.7423 20 7 -1.1632 -4.2357 -2.1310 21 14 -2.9144 -6.3691 -2.2831 22 1 -2.2804 -7.4145 -3.1260 23 1 -2.6294 -6.6466 -0.8523 24 1 -4.3826 -6.3767 -2.5059 25 7 -1.2308 -2.2034 -3.4650 26 1 -0.3633 0.4589 0.9195 27 1 -0.3633 0.5668 -0.8572 28 1 -0.3633 -1.0259 -0.0624 29 1 2.2282 -0.0768 1.9446 30 1 4.1106 -0.7191 0.7167 31 1 3.4945 -2.2535 1.4081 32 1 3.8131 -2.0500 -1.2702 33 1 2.3331 -2.8303 -0.6263 34 1 0.8438 0.2493 -3.3502 35 1 -0.8638 0.7417 -4.9839 36 1 -2.8779 -0.0625 -6.1898 37 1 -3.8183 -2.2816 -5.6000 38 1 -0.7355 -4.7637 -1.4388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330991856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:38 Heat of formation + Delta-G solvation = 4.293553 kcal Electronic energy + Delta-G solvation = -21886.068600 eV Core-core repulsion = 18728.240671 eV Total energy + Delta-G solvation = -3157.827930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39201 -39.87540 -38.21163 -35.86231 -34.80295 -32.38954 -32.19129 -31.72755 -30.54042 -27.52323 -26.73595 -24.28731 -23.21152 -22.16252 -21.98662 -20.24609 -19.32655 -18.21278 -17.78841 -17.36751 -16.45137 -16.25238 -16.06068 -15.66807 -15.39933 -15.04141 -14.69334 -14.29165 -14.03686 -13.79149 -13.41032 -13.18846 -13.01214 -12.84347 -12.75609 -12.69332 -12.55577 -12.31423 -12.22834 -11.82383 -11.76556 -11.67685 -11.41145 -10.81860 -10.49918 -9.87428 -9.41486 -9.03631 -8.77617 -8.03381 -6.40612 0.94705 1.27324 1.38595 1.50695 1.52832 2.19390 2.26193 2.38418 3.00792 3.24379 3.63854 3.69804 3.96567 4.09438 4.22545 4.32842 4.37854 4.45202 4.53691 4.68234 4.72384 4.77405 4.88868 4.90652 4.97141 5.02058 5.08163 5.09720 5.28622 5.31923 5.38875 5.70329 5.87741 5.90526 5.94403 6.17270 6.40504 6.54890 6.78262 6.89361 7.10643 7.80552 8.37995 8.57745 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.007223 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.024008 B = 3875.451757 C = 5170.108433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.095 3.905 3 H 0.089 0.911 4 N -0.686 5.686 5 C 0.051 3.949 6 C -0.114 4.114 7 C -0.110 4.110 8 H 0.123 0.877 9 C 0.477 3.523 10 O -0.453 6.453 11 N -0.657 5.657 12 C 0.352 3.648 13 C -0.349 4.349 14 C -0.035 4.035 15 C -0.333 4.333 16 C 0.237 3.763 17 C -0.467 4.467 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.686 5.686 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.256 1.256 25 N -0.506 5.506 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.027 0.973 29 H 0.351 0.649 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.418 0.582 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.342 9.429 4.651 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 H 0.107 0.893 4 N -0.318 5.318 5 C -0.078 4.078 6 C -0.152 4.152 7 C -0.132 4.132 8 H 0.141 0.859 9 C 0.261 3.739 10 O -0.319 6.319 11 N -0.306 5.306 12 C 0.113 3.887 13 C -0.374 4.374 14 C -0.059 4.059 15 C -0.356 4.356 16 C 0.111 3.889 17 C -0.498 4.498 18 H 0.102 0.898 19 C -0.214 4.214 20 N -0.305 5.305 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.180 1.180 25 N -0.225 5.225 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.168 0.832 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.255 0.745 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.128 7.483 5.721 13.831 hybrid contribution -0.232 0.763 -0.862 1.174 sum 9.896 8.245 4.859 13.767 Atomic orbital electron populations 1.21836 0.95988 1.00867 1.01209 1.21939 0.94606 0.96429 0.88559 0.89290 1.62852 1.29170 1.31685 1.08048 1.22973 0.91229 0.98812 0.94772 1.22551 0.98922 0.97185 0.96571 1.22395 0.94933 0.99310 0.96603 0.85939 1.21227 0.85730 0.85968 0.80931 1.91134 1.56523 1.19454 1.64767 1.43533 1.27501 1.26965 1.32640 1.19163 0.88090 0.91294 0.90171 1.20992 1.05124 1.03648 1.07617 1.21019 0.94002 0.94248 0.96632 1.21787 1.06457 0.99592 1.07722 1.18877 0.88080 0.93458 0.88471 1.19875 1.11632 1.00554 1.17692 0.89825 1.27006 0.95382 1.03076 0.95957 1.70519 1.12289 1.34375 1.13295 0.85372 0.79763 0.77736 0.77837 1.18998 1.19995 1.17983 1.68688 1.13316 1.11423 1.29086 0.91790 0.93045 0.95357 0.83209 0.91022 0.89930 0.89108 0.92993 0.74490 0.85116 0.84705 0.88000 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.38 71.98 0.60 -4.03 16 2 C 0.09 2.36 3.89 45.06 0.18 2.54 16 3 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 4 N -0.69 -16.48 7.14 -480.19 -3.43 -19.91 16 5 C 0.05 1.06 7.55 86.65 0.65 1.71 16 6 C -0.11 -3.09 6.57 31.95 0.21 -2.88 16 7 C -0.11 -3.01 3.40 -10.51 -0.04 -3.05 16 8 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 9 C 0.48 19.10 4.73 87.66 0.41 19.51 16 10 O -0.45 -23.55 10.60 -3.00 -0.03 -23.59 16 11 N -0.66 -25.27 5.09 -308.37 -1.57 -26.84 16 12 C 0.35 17.20 7.43 133.25 0.99 18.19 16 13 C -0.35 -15.09 9.96 22.72 0.23 -14.86 16 14 C -0.03 -1.55 10.15 22.39 0.23 -1.32 16 15 C -0.33 -17.24 9.83 22.87 0.22 -17.01 16 16 C 0.24 13.99 6.55 40.19 0.26 14.25 16 17 C -0.47 -27.27 9.14 23.47 0.21 -27.05 16 18 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 19 C 0.01 0.64 5.50 85.29 0.47 1.11 16 20 N -0.69 -40.48 9.00 21.84 0.20 -40.29 16 21 Si 0.97 42.02 29.56 68.60 2.03 44.05 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 25 N -0.51 -29.49 5.74 -186.36 -1.07 -30.56 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.70 7.55 -2.39 -0.02 1.69 16 28 H 0.03 1.23 6.56 -2.38 -0.02 1.22 16 29 H 0.35 6.27 8.92 -89.69 -0.80 5.47 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.92 6.93 -2.39 -0.02 1.90 16 34 H 0.42 11.70 8.70 -92.71 -0.81 10.89 16 35 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.27 15.09 8.29 -92.71 -0.77 14.32 16 Total: -1.00 -76.69 309.34 0.25 -76.44 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.51 Total: 33.59 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.64 Total: -12.89 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -5.87 Total: -117.59 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.03 Total: -23.59 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -76.69 0.25 -76.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330991856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.734 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds